Ss1.1-Pig4-TMW8028C03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCCTTCGGGGATCCACCTAAACACCGGCTCCAGACGCTCTGCGGCGCAGTCCCAACCA CCTGCTTTAGGTAGTGGAGCCTGCAGACTCCTGAGCTTCAGGATGGTTCGTGCTAAGAGC TGGACCCTGAAGAAGCATTTTGTAGGCTACCCTACTCCTAGCAACTTTGAACTGAAGACA GTTGAACTCCCGCCCTTAAAAAATGGAGAGGTCCTCTTGGAAGCTTTGTTCCTCACCGTG GATCCTTACATGAGGATAGCAGCAAGAAAATTGAAGGAGGGCGATATGATGATGGGAGAG CAAGTGGCCAGAGTTATAGAAAGTAAAAACGCAGCCTTCCCCACGGGAACTATTGTAGTG GCTCTTTTGGGCTGGACCACGCACTCCATTTCTGATGGGAAAAACTTGGAAAGGCTGCTG GCAGAGTGGCCGGACACACTACCGCTGTCTTTGGCCCTGGGAACGGTGGGCATGCCCGGC CTAACAGCCTACTTTGGCCTGTTGGACATCTGTGGTCTGAAGGGTGGAGAAACAGTGATG GTTAATGCGGCAGCAGGGGCCGTGGGCTCTGTCGTGGGGCAGATCGCGAAGCTCAAGGGC TGCAAAGTTGTTGGAGCAGCAGGGTCTGACGAAAAGGTTGCCTGCCTTAAAAAGTATGGA TTTGATGTTGCCTTTAACTATAAAACAATCGAGTCTTTGGAAGAAACTTTGAAAAAAGCC TCTCCTGAGGGCTATGATTGTTATTTTGATAACGTGGGTGGAGAGTTTTCCAACGCTGTT ACCTCCCAGATGAAGAAATTTGGAAGAATTGCCATATGTGGGGCTATCTCTACCTATAAC AGAACGGGCCCACCTCCCCCAGGGCCGCCCCCGGAGGTCGTCATCTATAACGAACTCTGC TTCCAAGGCTTCATCGTCACCCGCTGGCAAGGAGAAGTGCGCCAGAAGGCTCTGAGGGAC TTGCTGAAGTGGGTCTCAGAGGGTAAAATCCAGTACCATGAACACATCACGGAAGGATTT GAAAACATGCCCGCTGCATTTATGGGAATGCTGAAAGGCGAGAACCTGGGGAAAGCAATC GTGAAAGCATGAACCAAGACGACACGAGAGTCCAGAGATCACTTCATTCCTTGGAGAAAT TTTTTAATCCTTTAATAGAACGTGTACTGTCTTCATGATCTAAAACCCAGTGCTTGCAAT GAGTTTGAACTACCTAATAAAATGCATTTAAGGAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCCTTCGGGGATCCACCTAAACACCGGCTCCAGACGCTCTGCGGCGCAGTCCCAACCA CCTGCTTTAGGTAGTGGAGCCTGCAGACTCCTGAGCTTCAGGATGGTTCGTGCTAAGAGC TGGACCCTGAAGAAGCATTTTGTAGGCTACCCTACTCCTAGCAACTTTGAACTGAAGACA GTTGAACTCCCGCCCTTAAAAAATGGAGAGGTCCTCTTGGAAGCTTTGTTCCTCACCGTG GATCCTTACATGAGGATAGCAGCAAGAAAATTGAAGGAGGGCGATATGATGATGGGAGAG CAAGTGGCCAGAGTTATAGAAAGTAAAAACGCAGCCTTCCCCACGGGAACTATTGTAGTG GCTCTTTTGGGCTGGACCACGCACTCCATTTCTGATGGGAAAAACTTGGAAAGGCTGCTG GCAGAGTGGCCGGACACACTACCGCTGTCTTTGGCCCTGGGAACGGTGGGCATGCCCGGC CTAACAGCCTACTTTGGCCTGTTGGACATCTGTGGTCTGAAGGGTGGAGAAACAGTGATG GTTAATGCGGCAGCAGGGGCCGTGGGCTCTGTCGTGGGGCAGATCGCGAAGCTCAAGGGC TGCAAAGTTGTTGGAGCAGCAGGGTCTGACGAAAAGGTTGCCTGCCTTAAAAAGTATGGA TTTGATGTTGCCTTTAACTATAAAACAATCGAGTCTTTGGAAGAAACTTTGAAAAAAGCC TCTCCTGAGGGCTATGATTGTTATTTTGATAACGTGGGTGGAGAGTTTTCCAACGCTGTT ACCTCCCAGATGAAGAAATTTGGAAGAATTGCCATATGTGGGGCTATCTCTACCTATAAC AGAACGGGCCCACCTCCCCCAGGGCCGCCCCCGGAGGTCGTCATCTATAACGAACTCTGC TTCCAAGGCTTCATCGTCACCCGCTGGCAAGGAGAAGTGCGCCAGAAGGCTCTGAGGGAC TTGCTGAAGTGGGTCTCAGAGGGTAAAATCCAGTACCATGAACACATCACGGAAGGATTT GAAAACATGCCCGCTGCATTTATGGGAATGCTGAAAGGCGAGAACCTGGGGAAAGCAATC GTGAAAGCATGAACCAAGACGACACGAGAGTCCAGAGATCACTTCATTCCTTGGAGAAAT TTTTTAATCCTTTAATAGAACGTGTACTGTCTTCATGATCTAAAACCCAGTGCTTGCAAT GAGTTTGAACTACCTAATAAAATGCATTTAAGGAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 980-1099, + strand, RNAz p=0.55903 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 980-1099, + strand, RNAz p=0.55903 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK091948, + |
| Aligned organism(s): 77 entry(ies) | More info |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
| 93-208, gnl|bosTau2|chr8 (55626705-55626590) | |
| 93-208, gnl|canFam2|chr11 (69239523-69239410) | |
| 93-208, gnl|canFam2|chr11 (69239403-69239523) | |
| 93-208, gnl|danRer3|chrNA (141411832-141411935) | |
| 93-208, gnl|dasNov1|scaffold_13386 (6594-6706) | |
| 93-208, gnl|dasNov1|scaffold_13386 (6713-6593) | |
| 93-208, gnl|echTel1|scaffold_282159 (35211-35331) | |
| 93-208, gnl|echTel1|scaffold_307252 (2628-2512) | |
| 93-208, gnl|fr1|chrUn (165961312-165961415) | |
| 93-208, gnl|fr1|chrUn (165961422-165961312) | |
| 93-208, gnl|hg17|chr1 (144015620-144015731) | |
| 93-208, gnl|hg17|chr9 (111439148-111439268) | |
| 93-208, gnl|Hg17|chr9 (111439267-111439152) | |
| 93-208, gnl|loxAfr1|scaffold_3077 (866-979) | |
| 93-208, gnl|loxAfr1|scaffold_3077 (986-866) | |
| 93-208, gnl|mm7|chr4 (59026243-59026136) | |
| 93-208, gnl|mm7|chr4 (59026129-59026249) | |
| 93-208, gnl|Mm7|chr4 (59026248-59026133) | |
| 93-208, gnl|oryCun1|scaffold_202252 (91676-91556) | |
| 93-208, gnl|oryCun1|scaffold_214108 (8140-8256) | |
| 93-208, gnl|panTro1|chr14_random (19979935-19980048) | |
| 93-208, gnl|panTro1|chr14_random (19980045-19979935) | |
| 93-208, gnl|rheMac2|chr1 (126718759-126718871) | |
| 93-208, gnl|rheMac2|chr15 (24532398-24532278) | |
| 93-208, gnl|rn3|chr5 (77032812-77032704) | |
| 93-208, gnl|rn3|chr5 (77032697-77032817) | |
| 93-208, gnl|tetNig1|chrUn_random (21498590-21498703) | |
| 309-479, gnl|bosTau2|chr8 (55615266-55615096) | |
| 309-479, gnl|canFam2|chr11 (69236104-69235935) | |
| 309-479, gnl|canFam2|chr11 (69235929-69236124) | |
| 309-479, gnl|danRer3|chrNA (141413376-141413182) | |
| 309-479, gnl|dasNov1|scaffold_13386 (15318-15482) | |
| 309-479, gnl|dasNov1|scaffold_13386 (15488-15293) | |
| 309-479, gnl|echTel1|scaffold_26544 (5793-5988) | |
| 309-479, gnl|echTel1|scaffold_307252 (2409-2239) | |
| 309-479, gnl|fr1|chrUn (165962017-165962186) | |
| 309-479, gnl|fr1|chrUn (165962192-165961987) | |
| 309-479, gnl|hg17|chr1 (144015834-144016003) | |
| 309-479, gnl|hg17|chr9 (111427829-111428032) | |
| 309-479, gnl|Hg17|chr9 (111428003-111427833) | |
| 309-479, gnl|loxAfr1|scaffold_3077 (8962-9126) | |
| 309-479, gnl|loxAfr1|scaffold_3077 (9132-8937) | |
| 309-479, gnl|mm7|chr4 (59019571-59019405) | |
| 309-479, gnl|mm7|chr4 (59019399-59019595) | |
| 309-479, gnl|Mm7|chr4 (59019573-59019403) | |
| 309-479, gnl|monDom2|scaffold_19 (32623755-32623551) | |
| 309-479, gnl|oryCun1|scaffold_167741 (5210-5044) | |
| 309-479, gnl|oryCun1|scaffold_167741 (5038-5239) | |
| 309-479, gnl|panTro1|chr11 (95952124-95952327) | |
| 309-479, gnl|panTro1|chr14_random (19980151-19980321) | |
| 309-479, gnl|rheMac2|chr1 (126718970-126719139) | |
| 309-479, gnl|rheMac2|chr15 (24588781-24588578) | |
| 309-479, gnl|rn3|chr5 (77028450-77028284) | |
| 309-479, gnl|rn3|chr5 (77028278-77028474) | |
| 309-479, gnl|tetNig1|chrUn_random (21497986-21497816) | |
| 309-479, gnl|tetNig1|chrUn_random (21497811-21498006) | |
| 309-479, gnl|xenTro1|scaffold_153 (1367710-1367510) | |
| 596-755, gnl|bosTau2|chr8 (55608139-55607980) | |
| 596-755, gnl|canFam2|chr11 (69232018-69232182) | |
| 596-755, gnl|danRer3|chrNA (141415736-141415574) | |
| 596-755, gnl|dasNov1|scaffold_13386 (23074-22910) | |
| 596-755, gnl|echTel1|scaffold_26544 (1173-1337) | |
| 596-755, gnl|fr1|chrUn (165962720-165962556) | |
| 596-755, gnl|hg17|chr9 (111420625-111420789) | |
| 596-755, gnl|Hg17|chr9 (111420788-111420629) | |
| 596-755, gnl|mm7|chr4 (59014918-59015082) | |
| 596-755, gnl|Mm7|chr4 (59015081-59014922) | |
| 596-755, gnl|monDom2|scaffold_19 (32629796-32629632) | |
| 596-755, gnl|oryCun1|scaffold_167741 (1915-2079) | |
| 596-755, gnl|panTro1|chr11 (95944802-95944966) | |
| 596-755, gnl|rheMac2|chr15 (24550878-24550714) | |
| 596-755, gnl|rn3|chr5 (77023440-77023604) | |
| 596-755, gnl|tetNig1|chrUn_random (21497283-21497444) | |
| 596-755, gnl|xenTro1|scaffold_153 (1370214-1370050) | |
| 980-1179, gnl|bosTau2|chr8 (55598009-55597812) | |
| 980-1179, gnl|Hg17|chr9 (111405068-111404872) | |
| 980-1179, gnl|Mm7|chr4 (59008154-59007970) |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 93-208, gnl|bosTau2|chr8 (55626705-55626590) | |
| 93-208, gnl|canFam2|chr11 (69239523-69239410) | |
| 93-208, gnl|canFam2|chr11 (69239403-69239523) | |
| 93-208, gnl|danRer3|chrNA (141411832-141411935) | |
| 93-208, gnl|dasNov1|scaffold_13386 (6594-6706) | |
| 93-208, gnl|dasNov1|scaffold_13386 (6713-6593) | |
| 93-208, gnl|echTel1|scaffold_282159 (35211-35331) | |
| 93-208, gnl|echTel1|scaffold_307252 (2628-2512) | |
| 93-208, gnl|fr1|chrUn (165961312-165961415) | |
| 93-208, gnl|fr1|chrUn (165961422-165961312) | |
| 93-208, gnl|hg17|chr1 (144015620-144015731) | |
| 93-208, gnl|hg17|chr9 (111439148-111439268) | |
| 93-208, gnl|Hg17|chr9 (111439267-111439152) | |
| 93-208, gnl|loxAfr1|scaffold_3077 (866-979) | |
| 93-208, gnl|loxAfr1|scaffold_3077 (986-866) | |
| 93-208, gnl|mm7|chr4 (59026243-59026136) | |
| 93-208, gnl|mm7|chr4 (59026129-59026249) | |
| 93-208, gnl|Mm7|chr4 (59026248-59026133) | |
| 93-208, gnl|oryCun1|scaffold_202252 (91676-91556) | |
| 93-208, gnl|oryCun1|scaffold_214108 (8140-8256) | |
| 93-208, gnl|panTro1|chr14_random (19979935-19980048) | |
| 93-208, gnl|panTro1|chr14_random (19980045-19979935) | |
| 93-208, gnl|rheMac2|chr1 (126718759-126718871) | |
| 93-208, gnl|rheMac2|chr15 (24532398-24532278) | |
| 93-208, gnl|rn3|chr5 (77032812-77032704) | |
| 93-208, gnl|rn3|chr5 (77032697-77032817) | |
| 93-208, gnl|tetNig1|chrUn_random (21498590-21498703) | |
| 309-479, gnl|bosTau2|chr8 (55615266-55615096) | |
| 309-479, gnl|canFam2|chr11 (69236104-69235935) | |
| 309-479, gnl|canFam2|chr11 (69235929-69236124) | |
| 309-479, gnl|danRer3|chrNA (141413376-141413182) | |
| 309-479, gnl|dasNov1|scaffold_13386 (15318-15482) | |
| 309-479, gnl|dasNov1|scaffold_13386 (15488-15293) | |
| 309-479, gnl|echTel1|scaffold_26544 (5793-5988) | |
| 309-479, gnl|echTel1|scaffold_307252 (2409-2239) | |
| 309-479, gnl|fr1|chrUn (165962017-165962186) | |
| 309-479, gnl|fr1|chrUn (165962192-165961987) | |
| 309-479, gnl|hg17|chr1 (144015834-144016003) | |
| 309-479, gnl|hg17|chr9 (111427829-111428032) | |
| 309-479, gnl|Hg17|chr9 (111428003-111427833) | |
| 309-479, gnl|loxAfr1|scaffold_3077 (8962-9126) | |
| 309-479, gnl|loxAfr1|scaffold_3077 (9132-8937) | |
| 309-479, gnl|mm7|chr4 (59019571-59019405) | |
| 309-479, gnl|mm7|chr4 (59019399-59019595) | |
| 309-479, gnl|Mm7|chr4 (59019573-59019403) | |
| 309-479, gnl|monDom2|scaffold_19 (32623755-32623551) | |
| 309-479, gnl|oryCun1|scaffold_167741 (5210-5044) | |
| 309-479, gnl|oryCun1|scaffold_167741 (5038-5239) | |
| 309-479, gnl|panTro1|chr11 (95952124-95952327) | |
| 309-479, gnl|panTro1|chr14_random (19980151-19980321) | |
| 309-479, gnl|rheMac2|chr1 (126718970-126719139) | |
| 309-479, gnl|rheMac2|chr15 (24588781-24588578) | |
| 309-479, gnl|rn3|chr5 (77028450-77028284) | |
| 309-479, gnl|rn3|chr5 (77028278-77028474) | |
| 309-479, gnl|tetNig1|chrUn_random (21497986-21497816) | |
| 309-479, gnl|tetNig1|chrUn_random (21497811-21498006) | |
| 309-479, gnl|xenTro1|scaffold_153 (1367710-1367510) | |
| 596-755, gnl|bosTau2|chr8 (55608139-55607980) | |
| 596-755, gnl|canFam2|chr11 (69232018-69232182) | |
| 596-755, gnl|danRer3|chrNA (141415736-141415574) | |
| 596-755, gnl|dasNov1|scaffold_13386 (23074-22910) | |
| 596-755, gnl|echTel1|scaffold_26544 (1173-1337) | |
| 596-755, gnl|fr1|chrUn (165962720-165962556) | |
| 596-755, gnl|hg17|chr9 (111420625-111420789) | |
| 596-755, gnl|Hg17|chr9 (111420788-111420629) | |
| 596-755, gnl|mm7|chr4 (59014918-59015082) | |
| 596-755, gnl|Mm7|chr4 (59015081-59014922) | |
| 596-755, gnl|monDom2|scaffold_19 (32629796-32629632) | |
| 596-755, gnl|oryCun1|scaffold_167741 (1915-2079) | |
| 596-755, gnl|panTro1|chr11 (95944802-95944966) | |
| 596-755, gnl|rheMac2|chr15 (24550878-24550714) | |
| 596-755, gnl|rn3|chr5 (77023440-77023604) | |
| 596-755, gnl|tetNig1|chrUn_random (21497283-21497444) | |
| 596-755, gnl|xenTro1|scaffold_153 (1370214-1370050) | |
| 980-1179, gnl|bosTau2|chr8 (55598009-55597812) | |
| 980-1179, gnl|Hg17|chr9 (111405068-111404872) | |
| 980-1179, gnl|Mm7|chr4 (59008154-59007970) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cje (0.826173) | |
| clu (0.598229) | |
| fat (0.294855) | |
| sto (0.179824) | |
| ill (0.175593) | |
| csp (0.161186) | |
| cli (0.152812) | |
| che (0.136314) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.826173) | |
| clu (0.598229) | |
| fat (0.294855) | |
| sto (0.179824) | |
| ill (0.175593) | |
| csp (0.161186) | |
| cli (0.152812) | |
| che (0.136314) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |