Ss1.1-Pig4-TMW8028C21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTACACGTGCATTCATCTGTTTCTTGTTGCGGTAGCGATGGACGCTTTGGATCGAGTTG TAAAGCCCAAAACAAAAAGAGCCAAGAGATTCCTGGAGAAGAGAGAACCAAAACTCAGTG AAAATATTAAAAATGCTATGCTGATAAAAGGAGGAAATGCAAATTCAACAGTGACACAAG TTCTTAGAGATGTGTATGCACTGAAGAAACCATACGGCGTCCTCTATAAAAAGAAAAATA TTACAAGACCGTTTGAGGACCAGACATCATTGGAATTTTTTTCAAAGAAGTCAGATTGTT CTTTATTCATGTTTGGATCCCATAATAAGAAGCGGCCAAATAACCTAGTAATAGGTCGTA TGTATGACTACCATGTGCTGGATATGATTGAATTAGGTGTTGAGAAGTTTGTCTCTCTAA AAGATATTAAGAATAGTAAATGTCCCGAGGGAACAAAGCCCATGTTAATATTCGCAGGTG ATGATTTTGATGTAACAGAAGACTACAGAAGGCTGAAAAGTCTTCTTATTGATTTCTTCA GAGGCCCCACAGTACCAAATATCCGCCTGGCTGGTTTAGACTATGTTCTGCACTTCACTG CACTGAATGGGAAGATTTACTTTCGAAGCTATAAGTTACTGCTGAAGAAATCTGGCTGCA GAACACCACGGATTGAATTGGAAGAGATGGGACCCTCATTGGATCTGGTTCTGAGGAGGA CACACCTTGCGTCAGATGATCTGTATAAGTTATCTATGAAAATGCCTAAAGCCCTCAAGC CAAAGAAAAAGAAAAATATCTCTCATGATACTTTTGGTACAACTTATGGAAGGATTCATA TGCAGAAGCAAGACCTAAGCAAACTACAAACCAGGAAAATGAAGGGGCTGAAGAAGCGAC CTGCAGAAAGGATAACAGAGGACCAGGAGAAAAAAGCAAAGAGAATTAAAAAGAATTGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTACACGTGCATTCATCTGTTTCTTGTTGCGGTAGCGATGGACGCTTTGGATCGAGTTG TAAAGCCCAAAACAAAAAGAGCCAAGAGATTCCTGGAGAAGAGAGAACCAAAACTCAGTG AAAATATTAAAAATGCTATGCTGATAAAAGGAGGAAATGCAAATTCAACAGTGACACAAG TTCTTAGAGATGTGTATGCACTGAAGAAACCATACGGCGTCCTCTATAAAAAGAAAAATA TTACAAGACCGTTTGAGGACCAGACATCATTGGAATTTTTTTCAAAGAAGTCAGATTGTT CTTTATTCATGTTTGGATCCCATAATAAGAAGCGGCCAAATAACCTAGTAATAGGTCGTA TGTATGACTACCATGTGCTGGATATGATTGAATTAGGTGTTGAGAAGTTTGTCTCTCTAA AAGATATTAAGAATAGTAAATGTCCCGAGGGAACAAAGCCCATGTTAATATTCGCAGGTG ATGATTTTGATGTAACAGAAGACTACAGAAGGCTGAAAAGTCTTCTTATTGATTTCTTCA GAGGCCCCACAGTACCAAATATCCGCCTGGCTGGTTTAGACTATGTTCTGCACTTCACTG CACTGAATGGGAAGATTTACTTTCGAAGCTATAAGTTACTGCTGAAGAAATCTGGCTGCA GAACACCACGGATTGAATTGGAAGAGATGGGACCCTCATTGGATCTGGTTCTGAGGAGGA CACACCTTGCGTCAGATGATCTGTATAAGTTATCTATGAAAATGCCTAAAGCCCTCAAGC CAAAGAAAAAGAAAAATATCTCTCATGATACTTTTGGTACAACTTATGGAAGGATTCATA TGCAGAAGCAAGACCTAAGCAAACTACAAACCAGGAAAATGAAGGGGCTGAAGAAGCGAC CTGCAGAAAGGATAACAGAGGACCAGGAGAAAAAAGCAAAGAGAATTAAAAAGAATTGAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 84 entry(ies) | More info |
| Aligned organism(s): 84 entry(ies) | Help | Less info |
| 62-194, gnl|bosTau2|chr9 (20587793-20587661) | |
| 62-194, gnl|canFam2|chr2 (52763472-52763604) | |
| 62-194, gnl|canFam2|chr2 (52763472-52763604) | |
| 62-194, gnl|dasNov1|scaffold_4088 (103330-103462) | |
| 62-194, gnl|dasNov1|scaffold_4088 (103330-103462) | |
| 62-194, gnl|echTel1|scaffold_215153 (1479-1611) | |
| 62-194, gnl|echTel1|scaffold_215153 (1479-1611) | |
| 62-194, gnl|hg17|chr20 (33804174-33804306) | |
| 62-194, gnl|hg17|chr4 (116907584-116907716) | |
| 62-194, gnl|Hg17|chr6 (111412902-111413034) | |
| 62-194, gnl|loxAfr1|scaffold_130954 (4306-4171) | |
| 62-194, gnl|loxAfr1|scaffold_130954 (4306-4171) | |
| 62-194, gnl|Mm7|chr10 (40031893-40031761) | |
| 62-194, gnl|mm7|chr3 (35344989-35344857) | |
| 62-194, gnl|mm7|chr3 (35344989-35344857) | |
| 62-194, gnl|monDom2|scaffold_2 (110071310-110071442) | |
| 62-194, gnl|monDom2|scaffold_2 (110071310-110071442) | |
| 62-194, gnl|oryCun1|scaffold_179370 (6108-5985) | |
| 62-194, gnl|oryCun1|scaffold_179370 (6108-5985) | |
| 62-194, gnl|panTro1|chr21_random (10285927-10286059) | |
| 62-194, gnl|panTro1|chr3 (133566934-133567066) | |
| 62-194, gnl|rheMac2|chr10 (28789111-28788979) | |
| 62-194, gnl|rheMac2|chr5 (108536491-108536622) | |
| 62-194, gnl|rn3|chr6 (140580472-140580604) | |
| 62-194, gnl|rn3|chr6 (140580472-140580604) | |
| 517-642, gnl|bosTau2|chr9 (20526685-20526560) | |
| 517-642, gnl|canFam2|chr2 (52763935-52764039) | |
| 517-642, gnl|danRer3|chr20 (665382-665486) | |
| 517-642, gnl|dasNov1|scaffold_4088 (103800-103904) | |
| 517-642, gnl|fr1|chrUn (317329373-317329269) | |
| 517-642, gnl|hg17|chr20 (33804644-33804748) | |
| 517-642, gnl|Hg17|chr6 (111443635-111443760) | |
| 517-642, gnl|Mm7|chr10 (40014852-40014727) | |
| 517-642, gnl|mm7|chr3 (35344518-35344414) | |
| 517-642, gnl|monDom2|scaffold_2 (110072118-110072134) | |
| 517-642, gnl|oryCun1|scaffold_179370 (5653-5555) | |
| 517-642, gnl|panTro1|chr21_random (10286397-10286505) | |
| 517-642, gnl|rheMac2|chr10 (28788055-28787957) | |
| 517-642, gnl|rn3|chr6 (140580939-140581043) | |
| 517-642, gnl|tetNig1|chrUn_random (84259418-84259314) | |
| 778-960, gnl|bosTau2|chr9 (20519682-20519500) | |
| 778-960, gnl|canFam2|chr12 (70593561-70593745) | |
| 778-960, gnl|canFam2|chr2 (52764198-52764340) | |
| 778-960, gnl|canFam2|chr2 (52764198-52764337) | |
| 778-960, gnl|danRer3|chr20 (666061-666194) | |
| 778-960, gnl|danRer3|chr20 (666029-666202) | |
| 778-960, gnl|danRer3|chr20 (666061-666185) | |
| 778-960, gnl|dasNov1|scaffold_197356 (653-450) | |
| 778-960, gnl|dasNov1|scaffold_4088 (104054-104196) | |
| 778-960, gnl|dasNov1|scaffold_4088 (104054-104193) | |
| 778-960, gnl|fr1|chrUn (317328123-317328004) | |
| 778-960, gnl|fr1|chrUn (317328151-317328004) | |
| 778-960, gnl|fr1|chrUn (317328123-317328003) | |
| 778-960, gnl|galGal2|chr3 (64699476-64699301) | |
| 778-960, gnl|hg17|chr20 (33804898-33805038) | |
| 778-960, gnl|hg17|chr4 (116908302-116908433) | |
| 778-960, gnl|hg17|chr6 (111453275-111453447) | |
| 778-960, gnl|Hg17|chr6 (111453297-111453479) | |
| 778-960, gnl|loxAfr1|scaffold_19071 (14012-14157) | |
| 778-960, gnl|loxAfr1|scaffold_19071 (13956-14156) | |
| 778-960, gnl|loxAfr1|scaffold_19071 (14012-14154) | |
| 778-960, gnl|mm7|chr10 (40011175-40010950) | |
| 778-960, gnl|Mm7|chr10 (40011098-40010916) | |
| 778-960, gnl|mm7|chr3 (35344264-35344122) | |
| 778-960, gnl|mm7|chr3 (35344264-35344125) | |
| 778-960, gnl|monDom2|scaffold_0 (108817657-108817480) | |
| 778-960, gnl|monDom2|scaffold_2 (110072284-110072426) | |
| 778-960, gnl|monDom2|scaffold_2 (110072284-110072423) | |
| 778-960, gnl|oryCun1|scaffold_150510 (9880-9683) | |
| 778-960, gnl|oryCun1|scaffold_179370 (5405-5261) | |
| 778-960, gnl|oryCun1|scaffold_179370 (5405-5264) | |
| 778-960, gnl|panTro1|chr21_random (10286657-10286797) | |
| 778-960, gnl|panTro1|chr3 (133567652-133567783) | |
| 778-960, gnl|panTro1|chr5 (113792538-113792710) | |
| 778-960, gnl|rheMac2|chr10 (28787807-28787665) | |
| 778-960, gnl|rheMac2|chr4 (152902560-152902388) | |
| 778-960, gnl|rheMac2|chr5 (108537211-108537342) | |
| 778-960, gnl|rn3|chr20 (44412136-44411931) | |
| 778-960, gnl|rn3|chr6 (140581193-140581335) | |
| 778-960, gnl|rn3|chr6 (140581193-140581332) | |
| 778-960, gnl|tetNig1|chrUn_random (84258015-84257873) | |
| 778-960, gnl|tetNig1|chrUn_random (84258043-84257894) | |
| 778-960, gnl|tetNig1|chrUn_random (84258015-84257894) | |
| 778-960, gnl|xenTro1|scaffold_174 (636111-636286) |
| Aligned organism(s): 84 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-194, gnl|bosTau2|chr9 (20587793-20587661) | |
| 62-194, gnl|canFam2|chr2 (52763472-52763604) | |
| 62-194, gnl|canFam2|chr2 (52763472-52763604) | |
| 62-194, gnl|dasNov1|scaffold_4088 (103330-103462) | |
| 62-194, gnl|dasNov1|scaffold_4088 (103330-103462) | |
| 62-194, gnl|echTel1|scaffold_215153 (1479-1611) | |
| 62-194, gnl|echTel1|scaffold_215153 (1479-1611) | |
| 62-194, gnl|hg17|chr20 (33804174-33804306) | |
| 62-194, gnl|hg17|chr4 (116907584-116907716) | |
| 62-194, gnl|Hg17|chr6 (111412902-111413034) | |
| 62-194, gnl|loxAfr1|scaffold_130954 (4306-4171) | |
| 62-194, gnl|loxAfr1|scaffold_130954 (4306-4171) | |
| 62-194, gnl|Mm7|chr10 (40031893-40031761) | |
| 62-194, gnl|mm7|chr3 (35344989-35344857) | |
| 62-194, gnl|mm7|chr3 (35344989-35344857) | |
| 62-194, gnl|monDom2|scaffold_2 (110071310-110071442) | |
| 62-194, gnl|monDom2|scaffold_2 (110071310-110071442) | |
| 62-194, gnl|oryCun1|scaffold_179370 (6108-5985) | |
| 62-194, gnl|oryCun1|scaffold_179370 (6108-5985) | |
| 62-194, gnl|panTro1|chr21_random (10285927-10286059) | |
| 62-194, gnl|panTro1|chr3 (133566934-133567066) | |
| 62-194, gnl|rheMac2|chr10 (28789111-28788979) | |
| 62-194, gnl|rheMac2|chr5 (108536491-108536622) | |
| 62-194, gnl|rn3|chr6 (140580472-140580604) | |
| 62-194, gnl|rn3|chr6 (140580472-140580604) | |
| 517-642, gnl|bosTau2|chr9 (20526685-20526560) | |
| 517-642, gnl|canFam2|chr2 (52763935-52764039) | |
| 517-642, gnl|danRer3|chr20 (665382-665486) | |
| 517-642, gnl|dasNov1|scaffold_4088 (103800-103904) | |
| 517-642, gnl|fr1|chrUn (317329373-317329269) | |
| 517-642, gnl|hg17|chr20 (33804644-33804748) | |
| 517-642, gnl|Hg17|chr6 (111443635-111443760) | |
| 517-642, gnl|Mm7|chr10 (40014852-40014727) | |
| 517-642, gnl|mm7|chr3 (35344518-35344414) | |
| 517-642, gnl|monDom2|scaffold_2 (110072118-110072134) | |
| 517-642, gnl|oryCun1|scaffold_179370 (5653-5555) | |
| 517-642, gnl|panTro1|chr21_random (10286397-10286505) | |
| 517-642, gnl|rheMac2|chr10 (28788055-28787957) | |
| 517-642, gnl|rn3|chr6 (140580939-140581043) | |
| 517-642, gnl|tetNig1|chrUn_random (84259418-84259314) | |
| 778-960, gnl|bosTau2|chr9 (20519682-20519500) | |
| 778-960, gnl|canFam2|chr12 (70593561-70593745) | |
| 778-960, gnl|canFam2|chr2 (52764198-52764340) | |
| 778-960, gnl|canFam2|chr2 (52764198-52764337) | |
| 778-960, gnl|danRer3|chr20 (666061-666194) | |
| 778-960, gnl|danRer3|chr20 (666029-666202) | |
| 778-960, gnl|danRer3|chr20 (666061-666185) | |
| 778-960, gnl|dasNov1|scaffold_197356 (653-450) | |
| 778-960, gnl|dasNov1|scaffold_4088 (104054-104196) | |
| 778-960, gnl|dasNov1|scaffold_4088 (104054-104193) | |
| 778-960, gnl|fr1|chrUn (317328123-317328004) | |
| 778-960, gnl|fr1|chrUn (317328151-317328004) | |
| 778-960, gnl|fr1|chrUn (317328123-317328003) | |
| 778-960, gnl|galGal2|chr3 (64699476-64699301) | |
| 778-960, gnl|hg17|chr20 (33804898-33805038) | |
| 778-960, gnl|hg17|chr4 (116908302-116908433) | |
| 778-960, gnl|hg17|chr6 (111453275-111453447) | |
| 778-960, gnl|Hg17|chr6 (111453297-111453479) | |
| 778-960, gnl|loxAfr1|scaffold_19071 (14012-14157) | |
| 778-960, gnl|loxAfr1|scaffold_19071 (13956-14156) | |
| 778-960, gnl|loxAfr1|scaffold_19071 (14012-14154) | |
| 778-960, gnl|mm7|chr10 (40011175-40010950) | |
| 778-960, gnl|Mm7|chr10 (40011098-40010916) | |
| 778-960, gnl|mm7|chr3 (35344264-35344122) | |
| 778-960, gnl|mm7|chr3 (35344264-35344125) | |
| 778-960, gnl|monDom2|scaffold_0 (108817657-108817480) | |
| 778-960, gnl|monDom2|scaffold_2 (110072284-110072426) | |
| 778-960, gnl|monDom2|scaffold_2 (110072284-110072423) | |
| 778-960, gnl|oryCun1|scaffold_150510 (9880-9683) | |
| 778-960, gnl|oryCun1|scaffold_179370 (5405-5261) | |
| 778-960, gnl|oryCun1|scaffold_179370 (5405-5264) | |
| 778-960, gnl|panTro1|chr21_random (10286657-10286797) | |
| 778-960, gnl|panTro1|chr3 (133567652-133567783) | |
| 778-960, gnl|panTro1|chr5 (113792538-113792710) | |
| 778-960, gnl|rheMac2|chr10 (28787807-28787665) | |
| 778-960, gnl|rheMac2|chr4 (152902560-152902388) | |
| 778-960, gnl|rheMac2|chr5 (108537211-108537342) | |
| 778-960, gnl|rn3|chr20 (44412136-44411931) | |
| 778-960, gnl|rn3|chr6 (140581193-140581335) | |
| 778-960, gnl|rn3|chr6 (140581193-140581332) | |
| 778-960, gnl|tetNig1|chrUn_random (84258015-84257873) | |
| 778-960, gnl|tetNig1|chrUn_random (84258043-84257894) | |
| 778-960, gnl|tetNig1|chrUn_random (84258015-84257894) | |
| 778-960, gnl|xenTro1|scaffold_174 (636111-636286) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| sin (0.349895) | |
| vin (0.332557) | |
| cte (0.29274) | |
| cbe (0.239234) | |
| nep (0.183925) | |
| eye (0.170503) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| tra (0.123092) | |
| eje (0.0988338) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.349895) | |
| vin (0.332557) | |
| cte (0.29274) | |
| cbe (0.239234) | |
| nep (0.183925) | |
| eye (0.170503) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| tra (0.123092) | |
| eje (0.0988338) |