Ss1.1-Pig4-TMW8028D04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCGGGACAGGAGCCCCGGAGCCCGCCGCCGCAGGGAGGAACTGGGGTCTCCAGTCACG GGAGCCAGCTGGGGCCGCCGGCGGGAAGGGATCGCGGCTGCTGTCTCCCGCTCAGGATGC GGGTCCCCCGGCCTCAGCCCTGGTGGCTCGCTCTGCTGCTCCTCCTGCTGCCCGGAACGC CGCGCGCAGACAACCACCGCTCCCTCCTGTACCACCTCACGGCCGTGTCCGCCCCCACCC CGGGCGCTCCCGCCTTCTGGGTGTCGGGCTGGCTGGGGCCCCAGCAGTACCTGAGCTACA ATAACCTGCGCGCCCAGGCGGAGCCCTACGGCGCCTGGGTCTGGGAAAGCCAGGTGTCCT GGTACTGGGAGAAGGAGACCGCAGACCTGAGGAACAAGCAGAAGCTCTTTCTCGAGGCTC TCAAAACCTTGGAGGAAGGAGGGCCCTTCACCCTGCAGGGCCTTCTGGGCTGCGAATTGG GCCCCGACAATGTCTCGGTGCCTGTGGCCACGTTCGCCCTGAATGGCGAGGAGTTTATGA AGTTCGACACCAAGCTGGGCACCTGGGATGGGGAGTGGCCCGAGGCCCGGACCATTGGCT CCAAGTGGATGCAGGAGCCGGACGCGGTCAACAAGGAGAAGACCTTCCTGCTCTACTCCT GTCCCCACCGGCTGCTGGGGCATCTGGAGAGGGGCCGGGGCAACCTGGAGTGGAAGGAGC CGCCCTCCATGCGCATGAAGGCCCGACCCGGCACCGCGCCGGGCTTTTCCGTGCTCACCT GCATCGCCTTCTCCTTCTACCCACCGGAGCTGCAGCTGCGATTCCTCCGGAACGGGCTGG CGGCTGGCTCCGGGGAGAGTGACATCGGCCCCAACGGCGACGGCTCCTTCCATGCCTGGT CGTCGCTAACAGTCAAGAGCGGCGACGAGCACCACTACTGCTGTGTGGTGCAGCACGCGG GGCTGGCTCAGCCCCTCACCGTCGAGCTGGAATCCCCAGCGAAGTCCTCCATGCCAGTGG TTGGAATCATGGTCGGCTTCCTACTGCTCTTGATCGTGGCTGGAGGAGGAGCTCTGCTGT GGAGGAGGATGAGGAAGGGGCTGCCAGCCCCTTGGATCTCTTTTCATGGGGACGACGTAG GGGCCCTCCTGCCCACCCCCGACCTGGCCAAGGATGCTGAATCTTAGGATATGAATGCAT TCCCAGCAACTGCCTGCTGGTCCCCCATCCTGGCTGCCACCAGCTACTGTAGTCAGGTCC TCTTCATGCTGTGAGACCTCCTGGAATCCTGGTATTTCTGAGCCTCTGGAAGGAGCCGGA TGTCCTCCCTCTGGATTTCTCCTCCTGTGGTCTGCCTCAGTTCCCCCTCCTGATATACAT GGCTGTATTCCACCTCCACATATATAACACGGGTTTGGGCCTGACTCTTTGTGTTCTCAT TGTTTCACCTTTTAAGGCAATCGTGGGGGGAATTAAATGGTATAAGCCTTGGGCTTCAAA TCTCTCCAGAGGCCAACTTGCTGGCATGGTGGAATCTGCCAATTTTATATACCAAGTCAT GTGTTTTTAATTAATAAATTTCACAAATATTTACCGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCGGGACAGGAGCCCCGGAGCCCGCCGCCGCAGGGAGGAACTGGGGTCTCCAGTCACG GGAGCCAGCTGGGGCCGCCGGCGGGAAGGGATCGCGGCTGCTGTCTCCCGCTCAGGATGC GGGTCCCCCGGCCTCAGCCCTGGTGGCTCGCTCTGCTGCTCCTCCTGCTGCCCGGAACGC CGCGCGCAGACAACCACCGCTCCCTCCTGTACCACCTCACGGCCGTGTCCGCCCCCACCC CGGGCGCTCCCGCCTTCTGGGTGTCGGGCTGGCTGGGGCCCCAGCAGTACCTGAGCTACA ATAACCTGCGCGCCCAGGCGGAGCCCTACGGCGCCTGGGTCTGGGAAAGCCAGGTGTCCT GGTACTGGGAGAAGGAGACCGCAGACCTGAGGAACAAGCAGAAGCTCTTTCTCGAGGCTC TCAAAACCTTGGAGGAAGGAGGGCCCTTCACCCTGCAGGGCCTTCTGGGCTGCGAATTGG GCCCCGACAATGTCTCGGTGCCTGTGGCCACGTTCGCCCTGAATGGCGAGGAGTTTATGA AGTTCGACACCAAGCTGGGCACCTGGGATGGGGAGTGGCCCGAGGCCCGGACCATTGGCT CCAAGTGGATGCAGGAGCCGGACGCGGTCAACAAGGAGAAGACCTTCCTGCTCTACTCCT GTCCCCACCGGCTGCTGGGGCATCTGGAGAGGGGCCGGGGCAACCTGGAGTGGAAGGAGC CGCCCTCCATGCGCATGAAGGCCCGACCCGGCACCGCGCCGGGCTTTTCCGTGCTCACCT GCATCGCCTTCTCCTTCTACCCACCGGAGCTGCAGCTGCGATTCCTCCGGAACGGGCTGG CGGCTGGCTCCGGGGAGAGTGACATCGGCCCCAACGGCGACGGCTCCTTCCATGCCTGGT CGTCGCTAACAGTCAAGAGCGGCGACGAGCACCACTACTGCTGTGTGGTGCAGCACGCGG GGCTGGCTCAGCCCCTCACCGTCGAGCTGGAATCCCCAGCGAAGTCCTCCATGCCAGTGG TTGGAATCATGGTCGGCTTCCTACTGCTCTTGATCGTGGCTGGAGGAGGAGCTCTGCTGT GGAGGAGGATGAGGAAGGGGCTGCCAGCCCCTTGGATCTCTTTTCATGGGGACGACGTAG GGGCCCTCCTGCCCACCCCCGACCTGGCCAAGGATGCTGAATCTTAGGATATGAATGCAT TCCCAGCAACTGCCTGCTGGTCCCCCATCCTGGCTGCCACCAGCTACTGTAGTCAGGTCC TCTTCATGCTGTGAGACCTCCTGGAATCCTGGTATTTCTGAGCCTCTGGAAGGAGCCGGA TGTCCTCCCTCTGGATTTCTCCTCCTGTGGTCTGCCTCAGTTCCCCCTCCTGATATACAT GGCTGTATTCCACCTCCACATATATAACACGGGTTTGGGCCTGACTCTTTGTGTTCTCAT TGTTTCACCTTTTAAGGCAATCGTGGGGGGAATTAAATGGTATAAGCCTTGGGCTTCAAA TCTCTCCAGAGGCCAACTTGCTGGCATGGTGGAATCTGCCAATTTTATATACCAAGTCAT GTGTTTTTAATTAATAAATTTCACAAATATTTACCGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 320-1579, - strand, RNAz p=0.980797 | |
| 1292-1398, - strand, RNAz p=0.976757 | |
| 1304-1415, - strand, RNAz p=0.938633 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 320-1579, - strand, RNAz p=0.980797 | |
| 1292-1398, - strand, RNAz p=0.976757 | |
| 1304-1415, - strand, RNAz p=0.938633 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 181-439, gnl|bosTau2|chr18 (48648784-48649042) | |
| 181-439, gnl|canFam2|chr1 (109877315-109877031) | |
| 181-439, gnl|hg17|chr19 (54708901-54709194) | |
| 181-439, gnl|Hg17|chr19 (54708930-54709203) | |
| 181-439, gnl|mm7|chr7 (41278442-41278158) | |
| 181-439, gnl|Mm7|chr7 (41278405-41278151) | |
| 181-439, gnl|monDom2|scaffold_105 (4107146-4106865) | |
| 181-439, gnl|panTro1|chr20 (52070361-52070654) | |
| 181-439, gnl|rheMac2|chr19 (55778067-55778360) | |
| 181-439, gnl|rn3|chr1 (95653183-95652899) | |
| 440-744, gnl|bosTau2|chr18 (48649146-48649451) | |
| 440-744, gnl|canFam2|chr1 (109877030-109876735) | |
| 440-744, gnl|hg17|chr19 (54709195-54709480) | |
| 440-744, gnl|Hg17|chr19 (54709278-54709596) | |
| 440-744, gnl|mm7|chr7 (41278013-41277715) | |
| 440-744, gnl|Mm7|chr7 (41277915-41277629) | |
| 440-744, gnl|monDom2|scaffold_105 (4106864-4106574) | |
| 440-744, gnl|panTro1|chr20 (52070655-52070940) | |
| 440-744, gnl|rheMac2|chr19 (55778361-55778646) | |
| 440-744, gnl|rn3|chr1 (95652770-95652473) | |
| 1105-1594, gnl|bosTau2|chr18 (48653571-48654058) | |
| 1105-1594, gnl|canFam2|chr1 (109870869-109870324) | |
| 1105-1594, gnl|dasNov1|scaffold_94639 (2076-1544) | |
| 1105-1594, gnl|echTel1|scaffold_292803 (2723-3292) | |
| 1105-1594, gnl|hg17|chr19 (54720971-54721548) | |
| 1105-1594, gnl|Hg17|chr19 (54721076-54721547) | |
| 1105-1594, gnl|loxAfr1|scaffold_47795 (5996-5403) | |
| 1105-1594, gnl|mm7|chr7 (41269175-41268659) | |
| 1105-1594, gnl|Mm7|chr7 (41269086-41268660) | |
| 1105-1594, gnl|panTro1|chr20 (52082565-52083142) | |
| 1105-1594, gnl|rheMac2|chr19 (55792508-55793081) | |
| 1105-1594, gnl|rn3|chr1 (95645278-95644759) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 181-439, gnl|bosTau2|chr18 (48648784-48649042) | |
| 181-439, gnl|canFam2|chr1 (109877315-109877031) | |
| 181-439, gnl|hg17|chr19 (54708901-54709194) | |
| 181-439, gnl|Hg17|chr19 (54708930-54709203) | |
| 181-439, gnl|mm7|chr7 (41278442-41278158) | |
| 181-439, gnl|Mm7|chr7 (41278405-41278151) | |
| 181-439, gnl|monDom2|scaffold_105 (4107146-4106865) | |
| 181-439, gnl|panTro1|chr20 (52070361-52070654) | |
| 181-439, gnl|rheMac2|chr19 (55778067-55778360) | |
| 181-439, gnl|rn3|chr1 (95653183-95652899) | |
| 440-744, gnl|bosTau2|chr18 (48649146-48649451) | |
| 440-744, gnl|canFam2|chr1 (109877030-109876735) | |
| 440-744, gnl|hg17|chr19 (54709195-54709480) | |
| 440-744, gnl|Hg17|chr19 (54709278-54709596) | |
| 440-744, gnl|mm7|chr7 (41278013-41277715) | |
| 440-744, gnl|Mm7|chr7 (41277915-41277629) | |
| 440-744, gnl|monDom2|scaffold_105 (4106864-4106574) | |
| 440-744, gnl|panTro1|chr20 (52070655-52070940) | |
| 440-744, gnl|rheMac2|chr19 (55778361-55778646) | |
| 440-744, gnl|rn3|chr1 (95652770-95652473) | |
| 1105-1594, gnl|bosTau2|chr18 (48653571-48654058) | |
| 1105-1594, gnl|canFam2|chr1 (109870869-109870324) | |
| 1105-1594, gnl|dasNov1|scaffold_94639 (2076-1544) | |
| 1105-1594, gnl|echTel1|scaffold_292803 (2723-3292) | |
| 1105-1594, gnl|hg17|chr19 (54720971-54721548) | |
| 1105-1594, gnl|Hg17|chr19 (54721076-54721547) | |
| 1105-1594, gnl|loxAfr1|scaffold_47795 (5996-5403) | |
| 1105-1594, gnl|mm7|chr7 (41269175-41268659) | |
| 1105-1594, gnl|Mm7|chr7 (41269086-41268660) | |
| 1105-1594, gnl|panTro1|chr20 (52082565-52083142) | |
| 1105-1594, gnl|rheMac2|chr19 (55792508-55793081) | |
| 1105-1594, gnl|rn3|chr1 (95645278-95644759) |
| Expressed library(ies): 47 entry(ies) | More info |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
| cov (1.18937) | |
| cje (1.15664) | |
| cly (1.08578) | |
| nje (0.99552) | |
| csp (0.967118) | |
| nco (0.808669) | |
| jej (0.791374) | |
| eep (0.735384) | |
| eje (0.691836) | |
| cli (0.611247) | |
| cag (0.604778) | |
| col (0.585023) | |
| duo (0.518403) | |
| eru (0.480192) | |
| amn (0.417711) | |
| elu (0.385356) | |
| nep (0.36785) | |
| ill (0.351185) | |
| mcp (0.341297) | |
| nca (0.273748) | |
| fce (0.271592) | |
| clu (0.239292) | |
| jca (0.22792) | |
| mas (0.210305) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| eye (0.170503) | |
| eli (0.151814) | |
| lun (0.150489) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| thg (0.126791) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (1.18937) | |
| cje (1.15664) | |
| cly (1.08578) | |
| nje (0.99552) | |
| csp (0.967118) | |
| nco (0.808669) | |
| jej (0.791374) | |
| eep (0.735384) | |
| eje (0.691836) | |
| cli (0.611247) | |
| cag (0.604778) | |
| col (0.585023) | |
| duo (0.518403) | |
| eru (0.480192) | |
| amn (0.417711) | |
| elu (0.385356) | |
| nep (0.36785) | |
| ill (0.351185) | |
| mcp (0.341297) | |
| nca (0.273748) | |
| fce (0.271592) | |
| clu (0.239292) | |
| jca (0.22792) | |
| mas (0.210305) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| eye (0.170503) | |
| eli (0.151814) | |
| lun (0.150489) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| thg (0.126791) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |