Ss1.1-Pig4-TMW8028D21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGGCCTGGGACCGGAGCCGCACGGTCGCCGTCAGAATGTCGGGCAAAGACCGAATTGA AATCTTTCCCTCGCGAATGGCACAGACCATCATGAAGGCTCGGTTAAAAGGAGCACAAAC AGGTCGAAACCTCCTGAAGAAAAAATCTGATGCCTTAACTCTTCGATTTCGACAGATCCT TAAGAAGATAATAGAGACTAAAATGTTGATGGGTGAAGTGATGAGAGAAGCTGCTTTTTC ACTTGCCGAGGCCAAGTTCACAGCAGGGGACTTCAGCACCACAGTTATCCAAAACGTAAA TAAAGCCCAAGTGAAGATTAGAGCAAAGAAAGATAATGTAGCAGGTGTTACTTTGCCAGT ATTTGAACATTATCATGAAGGAACCGACAGTTATGAGCTGACTGGTTTAGCCAGAGGTGG GGAACAGTTGGCTAAACTGAAGAGGAATTATGCCAAAGCAGTGGAACTGCTGGTGGAACT AGCTTCGCTGCAGACTTCCTTTGTTACTTTGGATGAAGCTATTAAGATAACCAACAGGCG TGTAAATGCCATTGAACACGTCATCATTCCTCGGATTGAACGCACCCTTGCTTATATCAT CACAGAGCTGGATGAGAGAGAGCGAGAAGAGTTCTATAGGTTAAAGAAAATACAAGAGAA GAAAAAGATTCTCAAGGAAAAGTCTGAGAAAGACTTGGAACAACGAAGGGCAGCTGGAGA GGCGATGGAGCCTGCTAATCTTCTGGCTGAGGAGAAGGATGAGGATCTTCTGTTTGAATA ATCTTTCCTTCTCTGATTCTTTCAGAAGGCCTAACATGGCACCATTATAATTCACGGTGT GTAGATTTGGAACGTGTGGCCATTTATTATTTGGCCTCAGAATTTCACTGGTTGTAAAAT TTCCCTGGACATTGCTTATGGTATTACCTTTGCAGAATCATAATTCTTCCAACTGTTTAC CATCAATGACATTTGTAGAATCTGCCCAGAAACTTGTAGATTTTGCAGAAGTGTCACTGT ACTCCATGTATATGTATGTTACAAGTGATTTGCTTACCAAGCGTATTCTGAAATTCCCTC TAGGAAACGGCAGTGGTCTCAGCCAGCTCCTGCTGGAGCACCCTTTGTTCCTGCCTACTC GCATGCTTTGGCACCTTTGTCTGAGACTGCAGCCATCCTTGTGTTAGATACTGTAGTACT TCTCTCCTCAAGCTTTATGAAAATCTTCAGATTTTTTTTTTCCTTGAATGGCAGGTCTCT GTCCTCTATCATGGGAACAGTTCTGCCATTCAGATGTGACTGGTATCAACAGTAAAATGA TGATTTAAAAATGAGTCGTTGCTTTTTTAAAAAATTTACTGCTAAGAATAAGTTGGGTTC TTATGCTCAGATCAGCACATGGGGTTGGTGTCCAAAAAGAGCTTTCTCTGCAGGTGTGTA TGACGTGGGTAGCCTCCTTTTTTCCCCTCTTCATGTTTCAGTGTTTTACTAATAAGCTTA CTGAGATGATTGTTGAATTTTGGGGGTAATAATAAATATATAATTGCCAGTGAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGGCCTGGGACCGGAGCCGCACGGTCGCCGTCAGAATGTCGGGCAAAGACCGAATTGA AATCTTTCCCTCGCGAATGGCACAGACCATCATGAAGGCTCGGTTAAAAGGAGCACAAAC AGGTCGAAACCTCCTGAAGAAAAAATCTGATGCCTTAACTCTTCGATTTCGACAGATCCT TAAGAAGATAATAGAGACTAAAATGTTGATGGGTGAAGTGATGAGAGAAGCTGCTTTTTC ACTTGCCGAGGCCAAGTTCACAGCAGGGGACTTCAGCACCACAGTTATCCAAAACGTAAA TAAAGCCCAAGTGAAGATTAGAGCAAAGAAAGATAATGTAGCAGGTGTTACTTTGCCAGT ATTTGAACATTATCATGAAGGAACCGACAGTTATGAGCTGACTGGTTTAGCCAGAGGTGG GGAACAGTTGGCTAAACTGAAGAGGAATTATGCCAAAGCAGTGGAACTGCTGGTGGAACT AGCTTCGCTGCAGACTTCCTTTGTTACTTTGGATGAAGCTATTAAGATAACCAACAGGCG TGTAAATGCCATTGAACACGTCATCATTCCTCGGATTGAACGCACCCTTGCTTATATCAT CACAGAGCTGGATGAGAGAGAGCGAGAAGAGTTCTATAGGTTAAAGAAAATACAAGAGAA GAAAAAGATTCTCAAGGAAAAGTCTGAGAAAGACTTGGAACAACGAAGGGCAGCTGGAGA GGCGATGGAGCCTGCTAATCTTCTGGCTGAGGAGAAGGATGAGGATCTTCTGTTTGAATA ATCTTTCCTTCTCTGATTCTTTCAGAAGGCCTAACATGGCACCATTATAATTCACGGTGT GTAGATTTGGAACGTGTGGCCATTTATTATTTGGCCTCAGAATTTCACTGGTTGTAAAAT TTCCCTGGACATTGCTTATGGTATTACCTTTGCAGAATCATAATTCTTCCAACTGTTTAC CATCAATGACATTTGTAGAATCTGCCCAGAAACTTGTAGATTTTGCAGAAGTGTCACTGT ACTCCATGTATATGTATGTTACAAGTGATTTGCTTACCAAGCGTATTCTGAAATTCCCTC TAGGAAACGGCAGTGGTCTCAGCCAGCTCCTGCTGGAGCACCCTTTGTTCCTGCCTACTC GCATGCTTTGGCACCTTTGTCTGAGACTGCAGCCATCCTTGTGTTAGATACTGTAGTACT TCTCTCCTCAAGCTTTATGAAAATCTTCAGATTTTTTTTTTCCTTGAATGGCAGGTCTCT GTCCTCTATCATGGGAACAGTTCTGCCATTCAGATGTGACTGGTATCAACAGTAAAATGA TGATTTAAAAATGAGTCGTTGCTTTTTTAAAAAATTTACTGCTAAGAATAAGTTGGGTTC TTATGCTCAGATCAGCACATGGGGTTGGTGTCCAAAAAGAGCTTTCTCTGCAGGTGTGTA TGACGTGGGTAGCCTCCTTTTTTCCCCTCTTCATGTTTCAGTGTTTTACTAATAAGCTTA CTGAGATGATTGTTGAATTTTGGGGGTAATAATAAATATATAATTGCCAGTGAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 390-493, + strand, RNAz p=0.967096 | |
| 635-832, + strand, RNAz p=0.83857 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 390-493, + strand, RNAz p=0.967096 | |
| 635-832, + strand, RNAz p=0.83857 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_015994, + |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 79-205, gnl|bosTau2|chr10 (54276915-54277040) | |
| 79-205, gnl|canFam2|chr8 (44385284-44385410) | |
| 79-205, gnl|danRer3|chr2 (21010920-21010785) | |
| 79-205, gnl|dasNov1|scaffold_42247 (81-207) | |
| 79-205, gnl|echTel1|scaffold_320162 (44238-44112) | |
| 79-205, gnl|fr1|chrUn (228417179-228417060) | |
| 79-205, gnl|galGal2|chr5 (25877278-25877149) | |
| 79-205, gnl|hg17|chr14 (66889385-66889511) | |
| 79-205, gnl|Hg17|chr14 (66889510-66889385) | |
| 79-205, gnl|mm7|chr12 (76815894-76816017) | |
| 79-205, gnl|Mm7|chr12 (76816016-76815892) | |
| 79-205, gnl|monDom2|scaffold_8 (82594453-82594579) | |
| 79-205, gnl|oryCun1|scaffold_104858 (8704-8586) | |
| 79-205, gnl|panTro1|chr15 (66504607-66504733) | |
| 79-205, gnl|rheMac2|chr7 (130456916-130457042) | |
| 79-205, gnl|rn3|chr6 (101494295-101494421) | |
| 79-205, gnl|tetNig1|chr14 (2300318-2300199) | |
| 79-205, gnl|xenTro1|scaffold_7 (732013-731887) | |
| 390-493, gnl|bosTau2|chr10 (54281736-54281839) | |
| 390-493, gnl|canFam2|chr8 (44371693-44371874) | |
| 390-493, gnl|danRer3|chr2 (21013838-21013715) | |
| 390-493, gnl|dasNov1|scaffold_10072 (9858-10024) | |
| 390-493, gnl|echTel1|scaffold_232347 (10213-10391) | |
| 390-493, gnl|fr1|chrUn (228417808-228417675) | |
| 390-493, gnl|galGal2|chr5 (25880623-25880480) | |
| 390-493, gnl|hg17|chr14 (66882203-66882379) | |
| 390-493, gnl|Hg17|chr14 (66882341-66882238) | |
| 390-493, gnl|loxAfr1|scaffold_2993 (65971-65790) | |
| 390-493, gnl|mm7|chr12 (76807041-76807211) | |
| 390-493, gnl|Mm7|chr12 (76807171-76807068) | |
| 390-493, gnl|monDom2|scaffold_8 (82591190-82591368) | |
| 390-493, gnl|oryCun1|scaffold_133776 (159-4) | |
| 390-493, gnl|panTro1|chr15 (66497414-66497590) | |
| 390-493, gnl|rheMac2|chr7 (130449656-130449834) | |
| 390-493, gnl|rn3|chr6 (101486582-101486752) | |
| 390-493, gnl|tetNig1|chr14 (2300950-2300826) | |
| 390-493, gnl|xenTro1|scaffold_7 (735307-735165) | |
| 635-1553, gnl|bosTau2|chr10 (54287879-54288791) | |
| 635-1553, gnl|Hg17|chr14 (66875237-66874346) | |
| 635-1553, gnl|Mm7|chr12 (76802287-76801509) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 79-205, gnl|bosTau2|chr10 (54276915-54277040) | |
| 79-205, gnl|canFam2|chr8 (44385284-44385410) | |
| 79-205, gnl|danRer3|chr2 (21010920-21010785) | |
| 79-205, gnl|dasNov1|scaffold_42247 (81-207) | |
| 79-205, gnl|echTel1|scaffold_320162 (44238-44112) | |
| 79-205, gnl|fr1|chrUn (228417179-228417060) | |
| 79-205, gnl|galGal2|chr5 (25877278-25877149) | |
| 79-205, gnl|hg17|chr14 (66889385-66889511) | |
| 79-205, gnl|Hg17|chr14 (66889510-66889385) | |
| 79-205, gnl|mm7|chr12 (76815894-76816017) | |
| 79-205, gnl|Mm7|chr12 (76816016-76815892) | |
| 79-205, gnl|monDom2|scaffold_8 (82594453-82594579) | |
| 79-205, gnl|oryCun1|scaffold_104858 (8704-8586) | |
| 79-205, gnl|panTro1|chr15 (66504607-66504733) | |
| 79-205, gnl|rheMac2|chr7 (130456916-130457042) | |
| 79-205, gnl|rn3|chr6 (101494295-101494421) | |
| 79-205, gnl|tetNig1|chr14 (2300318-2300199) | |
| 79-205, gnl|xenTro1|scaffold_7 (732013-731887) | |
| 390-493, gnl|bosTau2|chr10 (54281736-54281839) | |
| 390-493, gnl|canFam2|chr8 (44371693-44371874) | |
| 390-493, gnl|danRer3|chr2 (21013838-21013715) | |
| 390-493, gnl|dasNov1|scaffold_10072 (9858-10024) | |
| 390-493, gnl|echTel1|scaffold_232347 (10213-10391) | |
| 390-493, gnl|fr1|chrUn (228417808-228417675) | |
| 390-493, gnl|galGal2|chr5 (25880623-25880480) | |
| 390-493, gnl|hg17|chr14 (66882203-66882379) | |
| 390-493, gnl|Hg17|chr14 (66882341-66882238) | |
| 390-493, gnl|loxAfr1|scaffold_2993 (65971-65790) | |
| 390-493, gnl|mm7|chr12 (76807041-76807211) | |
| 390-493, gnl|Mm7|chr12 (76807171-76807068) | |
| 390-493, gnl|monDom2|scaffold_8 (82591190-82591368) | |
| 390-493, gnl|oryCun1|scaffold_133776 (159-4) | |
| 390-493, gnl|panTro1|chr15 (66497414-66497590) | |
| 390-493, gnl|rheMac2|chr7 (130449656-130449834) | |
| 390-493, gnl|rn3|chr6 (101486582-101486752) | |
| 390-493, gnl|tetNig1|chr14 (2300950-2300826) | |
| 390-493, gnl|xenTro1|scaffold_7 (735307-735165) | |
| 635-1553, gnl|bosTau2|chr10 (54287879-54288791) | |
| 635-1553, gnl|Hg17|chr14 (66875237-66874346) | |
| 635-1553, gnl|Mm7|chr12 (76802287-76801509) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| cty (0.832639) | |
| clu (0.717875) | |
| pla (0.401016) | |
| kid (0.389206) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| med (0.348756) | |
| nca (0.273748) | |
| bla (0.248694) | |
| sag (0.182715) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| nje (0.16592) | |
| csp (0.161186) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| sug (0.127291) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.832639) | |
| clu (0.717875) | |
| pla (0.401016) | |
| kid (0.389206) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| med (0.348756) | |
| nca (0.273748) | |
| bla (0.248694) | |
| sag (0.182715) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| nje (0.16592) | |
| csp (0.161186) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| sug (0.127291) | |
| jca (0.11396) | |
| eje (0.0988338) |