Non-Coding RNA Search

Ss1.1-Pig4-TMW8028E10.3

Sequence:


               
               GGATGAGGAGTGACAAAAATATTAAAATAATTTGTGGCTGTGGATTTTTTTTAACTGCTG
GTAGTGGAATACTGGAAAAGCTTCATTTCTGAAGATGAATTTTATTTTTAAAAAATACAT
ATGCACTCAAACCTTGTAGCTTTGATCACAAATGGACAGATTTCTGAAACCAAAGGCAAC
TAAGTTGCTGTGTTAGCTCTTGCTGGATCTCAAGCCCAGGTCCCCCCGGCCGCCAGTGCT
CTTGTGGTTGTGCGCCGCCCCAGTGCTCCACGCGCAGGTATGCGAGAGTGTGTATGCTTG
TTTGAAACAGACACGCACCGTACATATGTACATAACCTACACATATTTATATCTACACAT
ATCTAGTTTTATTACTATAGACTCTAAGAATTGGTGGTTAACATGAAATGTTACCTTTTA
CAGACAGTTTTTAAAAATTAAAAATGTATGTACAGGTTTTGAAACTTTTTTAAAAGGGGG
AAAAAAGACTGTTAAGAGGAGGCTCTTTGATGTCATATAACACTTGAATATTTTATGCCT
CATTCTGTTTATCAGTTCTAGCAATCTGTATAAATGCATTTTAGAACTGATAGACAGTAA
ACTTGAATTTATCTTTGATAAGAATACATGCCACTGTACATTCAGATATTATTTAAATTT
GCAAACACACTGTTCTATATGTAAGGTACTGTATGTAAAACTCTTTATTAAAACTATTCC
ACATATCCTAAAATTTCAGCTTGCCTTTTTGCGGCCTTATATTTTGATGTAAAGATGATT
AAAAGAATGTGCGGAACAGTTATTAGAAATTTTTATTGCCTTTTGAGATTCTCCTGACAA
ATGTGCCAAAGATCACAGACATAAAATACAGCCCTGTGTATTTACCGATGATATATGAAC
TCTGTCAAAGATCATACTGGGAAATGAAAAGCTTTAATAGAGGTGATATGAGGTAGTCAT
TAAATTTGCATATTAAAGTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGAGGAGTGACAAAAATATTAAAATAATTTGTGGCTGTGGATTTTTTTTAACTGCTG
GTAGTGGAATACTGGAAAAGCTTCATTTCTGAAGATGAATTTTATTTTTAAAAAATACAT
ATGCACTCAAACCTTGTAGCTTTGATCACAAATGGACAGATTTCTGAAACCAAAGGCAAC
TAAGTTGCTGTGTTAGCTCTTGCTGGATCTCAAGCCCAGGTCCCCCCGGCCGCCAGTGCT
CTTGTGGTTGTGCGCCGCCCCAGTGCTCCACGCGCAGGTATGCGAGAGTGTGTATGCTTG
TTTGAAACAGACACGCACCGTACATATGTACATAACCTACACATATTTATATCTACACAT
ATCTAGTTTTATTACTATAGACTCTAAGAATTGGTGGTTAACATGAAATGTTACCTTTTA
CAGACAGTTTTTAAAAATTAAAAATGTATGTACAGGTTTTGAAACTTTTTTAAAAGGGGG
AAAAAAGACTGTTAAGAGGAGGCTCTTTGATGTCATATAACACTTGAATATTTTATGCCT
CATTCTGTTTATCAGTTCTAGCAATCTGTATAAATGCATTTTAGAACTGATAGACAGTAA
ACTTGAATTTATCTTTGATAAGAATACATGCCACTGTACATTCAGATATTATTTAAATTT
GCAAACACACTGTTCTATATGTAAGGTACTGTATGTAAAACTCTTTATTAAAACTATTCC
ACATATCCTAAAATTTCAGCTTGCCTTTTTGCGGCCTTATATTTTGATGTAAAGATGATT
AAAAGAATGTGCGGAACAGTTATTAGAAATTTTTATTGCCTTTTGAGATTCTCCTGACAA
ATGTGCCAAAGATCACAGACATAAAATACAGCCCTGTGTATTTACCGATGATATATGAAC
TCTGTCAAAGATCATACTGGGAAATGAAAAGCTTTAATAGAGGTGATATGAGGTAGTCAT
TAAATTTGCATATTAAAGTAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               234-350, - strand, RNAz p=0.871805
               

               
               506-664, - strand, RNAz p=0.910891

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-350, - strand, RNAz p=0.871805
               

               
               506-664, - strand, RNAz p=0.910891

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               555-621, + strand, RNAmicro p=0.908151

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               555-621, + strand, RNAmicro p=0.908151

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-984, gnl|bosTau2|chr14 (4449336-4450323)
               

               
               1-984, gnl|Hg17|chr8 (133928292-133929272)
               

               
               1-984, gnl|Mm7|chr15 (66726402-66727380)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-984, gnl|bosTau2|chr14 (4449336-4450323)
               

               
               1-984, gnl|Hg17|chr8 (133928292-133929272)
               

               
               1-984, gnl|Mm7|chr15 (66726402-66727380)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               clu (1.43575)
               

               
               elu (0.385356)
               

               
               cte (0.29274)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (1.43575)
               

               
               elu (0.385356)
               

               
               cte (0.29274)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

	234-350, - strand, RNAz p=0.871805
	506-664, - strand, RNAz p=0.910891

	1-984, gnl\|bosTau2\|chr14 (4449336-4450323)
	1-984, gnl\|Hg17\|chr8 (133928292-133929272)
	1-984, gnl\|Mm7\|chr15 (66726402-66727380)

	clu (1.43575)
	elu (0.385356)
	cte (0.29274)
	tes (0.207814)
	sag (0.182715)
	rec (0.17307)
	cje (0.165235)
	fco (0.157208)
	isp (0.150376)
	ski (0.146735)
	lin (0.145603)
	ssp (0.13552)
	ute (0.132784)
	bla (0.124347)
	ebs (0.118301)