Ss1.1-Pig4-TMW8028E13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATCAGGAGAAGAGGCCTTGGGACCATGAACCGCCTCAGCCAAAGCCCTTGACTCACTG GAAGGATGTCCTTCTTCTGGAGGGAGTGACCCTGACCCAGGATGCCAGGCAACTGAATGG ATCAGAGCGAGCGGTGCTGGATGGGCTGCTCACCCCAGCTGAGTGTGGGGTGCTGTTGCA GCTGGCCAAGGATGCAGCCGAGGCTGGCGCCAGGTCGGGCTATCGAGGCCGCCGCTCTCC ACACACCCCCCACGAACGCTTCGAGGGGCTCACGGTGCTCAAGGCTGCGCAGCTGGCCCG AGCTGGGGCGGTGGGCAGTCAGGGTGCTCAGCTGCTCCTGGAGGTGAGCGAGCGCGTGCG GACCCTGACACAGGCCTACTTCTCCCCGGAGCGGCCCCTGCATCTCTCCTTCACCCACCT GGTGTGCCGCAGCGCCATAGAAGGAGAGCAGGCGCAGCGCATGGACCTGAGCCACCCGGT GCACGCGGACAACTGCGTCCTGGACCCCGACACTGGGGAGTGCTGGCGGGAGCCCCCAGC CTACACCTATCGGGATTACAGTGGACTCCTCTACCTCAACGATGACTTCCAGGGCGGGGA CCTGTTCTTCACAGAGCCCAATGCCCTCACCGTCACGGCTCAGGTGCGTCCTCGCTGCGG ACGCCTCGTGGCCTTCAGCTCTGGTGGGGAGAATCCCCATGGCGTTTGGGCCGTGACGCG GGGACGGCGCTGTGCCCTGGCCCTGTGGCACACGTGGGCACCGGAGCACAGGGAGCAGGA GTGGACAGAAGCCAAAGAGCTGCTGCAGGTGCCAGAGGAGGAGGGGGAAGAAATGCCCAG CAGAGACCCTGCCCCAGAACCCCCCAGCCGCAGGCTTCAGCGGGCCCAGGACAAGGCTGG GAAGCCGCCTCGGGTCCGAGAGGAGCTGTGAGGGGCCGAGCCAGCTCCTTGGGGATGTGC CTCGTGGAGGGTCTGCCTTGGTGCCAGGACCCAGGAGAAGTCCCCATGTGACAGGAGCAG AACAGCGAGCTCCCTGTCCCTGCACCCCCACCATCTCGGGGATCCCAAGGGCCGTGCAGC CCTGGACTCGGAGGACACTGCACGGACTGGCCCAGGGAGCCAGGCCGGACCCAGCTGATG GAGTGCTGGCCCTCGGACAGACAGAAGATTCCATACTGCCCTGGGAGTGGCTGGGGGTAG GGCCCGGCTGCTTTAAGTGAGAAGGATGTGGGGGGGGGGGGGAGAAGAACCCCACTGCCC TCTCCCAGCCTGTCAATAAAAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATCAGGAGAAGAGGCCTTGGGACCATGAACCGCCTCAGCCAAAGCCCTTGACTCACTG GAAGGATGTCCTTCTTCTGGAGGGAGTGACCCTGACCCAGGATGCCAGGCAACTGAATGG ATCAGAGCGAGCGGTGCTGGATGGGCTGCTCACCCCAGCTGAGTGTGGGGTGCTGTTGCA GCTGGCCAAGGATGCAGCCGAGGCTGGCGCCAGGTCGGGCTATCGAGGCCGCCGCTCTCC ACACACCCCCCACGAACGCTTCGAGGGGCTCACGGTGCTCAAGGCTGCGCAGCTGGCCCG AGCTGGGGCGGTGGGCAGTCAGGGTGCTCAGCTGCTCCTGGAGGTGAGCGAGCGCGTGCG GACCCTGACACAGGCCTACTTCTCCCCGGAGCGGCCCCTGCATCTCTCCTTCACCCACCT GGTGTGCCGCAGCGCCATAGAAGGAGAGCAGGCGCAGCGCATGGACCTGAGCCACCCGGT GCACGCGGACAACTGCGTCCTGGACCCCGACACTGGGGAGTGCTGGCGGGAGCCCCCAGC CTACACCTATCGGGATTACAGTGGACTCCTCTACCTCAACGATGACTTCCAGGGCGGGGA CCTGTTCTTCACAGAGCCCAATGCCCTCACCGTCACGGCTCAGGTGCGTCCTCGCTGCGG ACGCCTCGTGGCCTTCAGCTCTGGTGGGGAGAATCCCCATGGCGTTTGGGCCGTGACGCG GGGACGGCGCTGTGCCCTGGCCCTGTGGCACACGTGGGCACCGGAGCACAGGGAGCAGGA GTGGACAGAAGCCAAAGAGCTGCTGCAGGTGCCAGAGGAGGAGGGGGAAGAAATGCCCAG CAGAGACCCTGCCCCAGAACCCCCCAGCCGCAGGCTTCAGCGGGCCCAGGACAAGGCTGG GAAGCCGCCTCGGGTCCGAGAGGAGCTGTGAGGGGCCGAGCCAGCTCCTTGGGGATGTGC CTCGTGGAGGGTCTGCCTTGGTGCCAGGACCCAGGAGAAGTCCCCATGTGACAGGAGCAG AACAGCGAGCTCCCTGTCCCTGCACCCCCACCATCTCGGGGATCCCAAGGGCCGTGCAGC CCTGGACTCGGAGGACACTGCACGGACTGGCCCAGGGAGCCAGGCCGGACCCAGCTGATG GAGTGCTGGCCCTCGGACAGACAGAAGATTCCATACTGCCCTGGGAGTGGCTGGGGGTAG GGCCCGGCTGCTTTAAGTGAGAAGGATGTGGGGGGGGGGGGGAGAAGAACCCCACTGCCC TCTCCCAGCCTGTCAATAAAAATC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 65-191, gnl|bosTau2|chr5 (61186008-61186134) | |
| 65-191, gnl|canFam2|chr27 (41217800-41217637) | |
| 65-191, gnl|danRer3|chr16 (6491212-6491360) | |
| 65-191, gnl|echTel1|scaffold_311506 (88436-88612) | |
| 65-191, gnl|fr1|chrUn (265710888-265711034) | |
| 65-191, gnl|galGal2|chr1 (71326695-71326832) | |
| 65-191, gnl|hg17|chr12 (6813338-6813507) | |
| 65-191, gnl|Hg17|chr12 (6813349-6813475) | |
| 65-191, gnl|loxAfr1|scaffold_211428 (322-493) | |
| 65-191, gnl|mm7|chr6 (124877155-124876968) | |
| 65-191, gnl|Mm7|chr6 (124877142-124877016) | |
| 65-191, gnl|monDom2|scaffold_31 (15301043-15301180) | |
| 65-191, gnl|panTro1|chr10 (7349957-7350126) | |
| 65-191, gnl|rheMac2|chr11 (7015051-7015220) | |
| 65-191, gnl|rn3|chr4 (161218761-161218593) | |
| 65-191, gnl|tetNig1|chr11 (10735925-10735763) | |
| 65-191, gnl|xenTro1|scaffold_991 (367849-367989) | |
| 290-444, gnl|bosTau2|chr5 (61190597-61190751) | |
| 290-444, gnl|canFam2|chr27 (41213284-41213114) | |
| 290-444, gnl|danRer3|chr16 (6494456-6494613) | |
| 290-444, gnl|echTel1|scaffold_311506 (90902-91073) | |
| 290-444, gnl|fr1|chrUn (75035134-75034976) | |
| 290-444, gnl|galGal2|chr1 (71327820-71327984) | |
| 290-444, gnl|hg17|chr12 (6816846-6817015) | |
| 290-444, gnl|Hg17|chr12 (6816846-6816999) | |
| 290-444, gnl|loxAfr1|scaffold_11498 (43103-42933) | |
| 290-444, gnl|mm7|chr6 (124872053-124871883) | |
| 290-444, gnl|Mm7|chr6 (124872052-124871898) | |
| 290-444, gnl|monDom2|scaffold_31 (15301927-15302096) | |
| 290-444, gnl|panTro1|chr10 (7353473-7353603) | |
| 290-444, gnl|rheMac2|chr11 (7018551-7018719) | |
| 290-444, gnl|rn3|chr4 (161213548-161213378) | |
| 290-444, gnl|tetNig1|chr8 (9120380-9120223) | |
| 290-444, gnl|xenTro1|scaffold_991 (369483-369636) | |
| 776-1284, gnl|bosTau2|chr5 (61192559-61193095) | |
| 776-1284, gnl|Hg17|chr12 (6818719-6819258) | |
| 776-1284, gnl|Mm7|chr6 (124868233-124867498) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 65-191, gnl|bosTau2|chr5 (61186008-61186134) | |
| 65-191, gnl|canFam2|chr27 (41217800-41217637) | |
| 65-191, gnl|danRer3|chr16 (6491212-6491360) | |
| 65-191, gnl|echTel1|scaffold_311506 (88436-88612) | |
| 65-191, gnl|fr1|chrUn (265710888-265711034) | |
| 65-191, gnl|galGal2|chr1 (71326695-71326832) | |
| 65-191, gnl|hg17|chr12 (6813338-6813507) | |
| 65-191, gnl|Hg17|chr12 (6813349-6813475) | |
| 65-191, gnl|loxAfr1|scaffold_211428 (322-493) | |
| 65-191, gnl|mm7|chr6 (124877155-124876968) | |
| 65-191, gnl|Mm7|chr6 (124877142-124877016) | |
| 65-191, gnl|monDom2|scaffold_31 (15301043-15301180) | |
| 65-191, gnl|panTro1|chr10 (7349957-7350126) | |
| 65-191, gnl|rheMac2|chr11 (7015051-7015220) | |
| 65-191, gnl|rn3|chr4 (161218761-161218593) | |
| 65-191, gnl|tetNig1|chr11 (10735925-10735763) | |
| 65-191, gnl|xenTro1|scaffold_991 (367849-367989) | |
| 290-444, gnl|bosTau2|chr5 (61190597-61190751) | |
| 290-444, gnl|canFam2|chr27 (41213284-41213114) | |
| 290-444, gnl|danRer3|chr16 (6494456-6494613) | |
| 290-444, gnl|echTel1|scaffold_311506 (90902-91073) | |
| 290-444, gnl|fr1|chrUn (75035134-75034976) | |
| 290-444, gnl|galGal2|chr1 (71327820-71327984) | |
| 290-444, gnl|hg17|chr12 (6816846-6817015) | |
| 290-444, gnl|Hg17|chr12 (6816846-6816999) | |
| 290-444, gnl|loxAfr1|scaffold_11498 (43103-42933) | |
| 290-444, gnl|mm7|chr6 (124872053-124871883) | |
| 290-444, gnl|Mm7|chr6 (124872052-124871898) | |
| 290-444, gnl|monDom2|scaffold_31 (15301927-15302096) | |
| 290-444, gnl|panTro1|chr10 (7353473-7353603) | |
| 290-444, gnl|rheMac2|chr11 (7018551-7018719) | |
| 290-444, gnl|rn3|chr4 (161213548-161213378) | |
| 290-444, gnl|tetNig1|chr8 (9120380-9120223) | |
| 290-444, gnl|xenTro1|scaffold_991 (369483-369636) | |
| 776-1284, gnl|bosTau2|chr5 (61192559-61193095) | |
| 776-1284, gnl|Hg17|chr12 (6818719-6819258) | |
| 776-1284, gnl|Mm7|chr6 (124868233-124867498) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) |