Ss1.1-Pig4-TMW8028E14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGCCGGCAGGTGCGGTCCTCTTGGACGCTGCCCAATGGCCTGGTTTTGGAGGGCCCCC AGGCCCGGGGACGCTTCACCCTGTGGGAGAACGGCACCCTCACCGTGCGGGACGCCTCGG TGTTTGACAGGGGGACCTACGTGTGCAAGGCAGACACGGAGTATGGCCCCTCGGTCGCGA ATGTTCCAGTGATTGTGATCGCCTACCCTCCCCGCATCACCAGCGAGCCCACGCCCGTCA TCTACACTCGGCCTGGGAACATGGTGAAGCTTAACTGTATGGTCATGGCCATTCCCAAAG CCGAGATAACATGGGAGCTGCCGGATAAGTCCCTTCTGATGGCAGGAACCCAGCCCCGTC TCTACGGGCACAGGTTCCTCCACCCACAGGGATCGTTAACCATCCAGCAGGCCACCCAGA GGGATGCCGGCTTCTACAAGTGCTCTGCGAAAAACATCCTGGGCAGTGACTCCAAAACAA CGTACATCCACGTCTACTGAGACGCCAGGCGGAGAACACAGACTCTGTGGTGCTTGCTTA GGGAGTTGGAACCAAGCCTCCTTTGGAAGGAAAGCTGGGGCTGGAGAGTTGGAGCTTTAC AAGGATTCGTCCTAAGAGGTGGTGGCTCTTCTTCTTGGCTTTCAGGCTTGCCTTGACCTT GACCTAAGCTTGTTGAGGAAAGGAAGCAAGACAGACACTGGAGGGAGGGGTCAGCCTCTC TGGTGTGTGTGTGTGTGTATGTGGTGGAGGGGTGTTGGGGGGAGACTTTTTTTCATGTTT ACAAAACACCATATGCTCTTGCCTTGTCTTTCACCAGACTTGAGCACAAACCGAAATTTC TGGGTTGGCCTCAACCACCCTGACACCTGAAGGAGTATCTGGATGGTGTCCAAGGCATAT TTGCCAAAAATAAGCTGTACACATGCACAGTGCCTTCCTGCCACACCCCCCGACACACAC ACACACTGGTTAACCTGTCACAGTTTTCACATGATAGAATGTTCTAGAATGAGTCCCCAT CTTTCCGTTATTCCCTCCGTCACTTCACCACGCCAGCTTGCCACCTTCCCCCCACCCCCA ACCAAGGGCTGAGAACCAAAGTGATTGATTTTATTTTATTTTGTTCACATCCAAGTTTGA TACAGCACAGCTCCCATTTTATAGGGAAGATTACGTTCTCCCTGGAATTCACTTTTTTAT ATAATGTTTTATTATATATATATTTTTTCTTTCTAGTCAGACAGTGAGAGTAGAAAGAGA AAGACATCCTTTCTGTCTCTTTTAAAAGAATAAATTATTGGTCTTTGCAAGACTTGGATA CATTAGGGCAGGCGTGGAAATGTAATTAAAAAAATACTTTCTTCCCCAACTTCCTTCCAA TCCATTAAGCACTATTATATTACCTTTCCCAGGAACCCACCAGTGGGGGAGGCTTAGATA TTGGATTTCTTTGTCTTATCCCATGGGAGCTGTGGTGGGGGAGATGACAGGAAAGGAAGA AGAGAGCTAAGTCGTGACCCCACAGAATAAATCCGTAATCTTCCTGAGAAACCCAGAAAT ATCTCCCTTCCTGTCACACTGTGTCCATAGAAAGATCTGTTATTTCCATGACTGCTTTAC TGTATTTTTAAGGTCAACACAATGTACATTTGATAATAAAATAATATTTTCCAAAGAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGCCGGCAGGTGCGGTCCTCTTGGACGCTGCCCAATGGCCTGGTTTTGGAGGGCCCCC AGGCCCGGGGACGCTTCACCCTGTGGGAGAACGGCACCCTCACCGTGCGGGACGCCTCGG TGTTTGACAGGGGGACCTACGTGTGCAAGGCAGACACGGAGTATGGCCCCTCGGTCGCGA ATGTTCCAGTGATTGTGATCGCCTACCCTCCCCGCATCACCAGCGAGCCCACGCCCGTCA TCTACACTCGGCCTGGGAACATGGTGAAGCTTAACTGTATGGTCATGGCCATTCCCAAAG CCGAGATAACATGGGAGCTGCCGGATAAGTCCCTTCTGATGGCAGGAACCCAGCCCCGTC TCTACGGGCACAGGTTCCTCCACCCACAGGGATCGTTAACCATCCAGCAGGCCACCCAGA GGGATGCCGGCTTCTACAAGTGCTCTGCGAAAAACATCCTGGGCAGTGACTCCAAAACAA CGTACATCCACGTCTACTGAGACGCCAGGCGGAGAACACAGACTCTGTGGTGCTTGCTTA GGGAGTTGGAACCAAGCCTCCTTTGGAAGGAAAGCTGGGGCTGGAGAGTTGGAGCTTTAC AAGGATTCGTCCTAAGAGGTGGTGGCTCTTCTTCTTGGCTTTCAGGCTTGCCTTGACCTT GACCTAAGCTTGTTGAGGAAAGGAAGCAAGACAGACACTGGAGGGAGGGGTCAGCCTCTC TGGTGTGTGTGTGTGTGTATGTGGTGGAGGGGTGTTGGGGGGAGACTTTTTTTCATGTTT ACAAAACACCATATGCTCTTGCCTTGTCTTTCACCAGACTTGAGCACAAACCGAAATTTC TGGGTTGGCCTCAACCACCCTGACACCTGAAGGAGTATCTGGATGGTGTCCAAGGCATAT TTGCCAAAAATAAGCTGTACACATGCACAGTGCCTTCCTGCCACACCCCCCGACACACAC ACACACTGGTTAACCTGTCACAGTTTTCACATGATAGAATGTTCTAGAATGAGTCCCCAT CTTTCCGTTATTCCCTCCGTCACTTCACCACGCCAGCTTGCCACCTTCCCCCCACCCCCA ACCAAGGGCTGAGAACCAAAGTGATTGATTTTATTTTATTTTGTTCACATCCAAGTTTGA TACAGCACAGCTCCCATTTTATAGGGAAGATTACGTTCTCCCTGGAATTCACTTTTTTAT ATAATGTTTTATTATATATATATTTTTTCTTTCTAGTCAGACAGTGAGAGTAGAAAGAGA AAGACATCCTTTCTGTCTCTTTTAAAAGAATAAATTATTGGTCTTTGCAAGACTTGGATA CATTAGGGCAGGCGTGGAAATGTAATTAAAAAAATACTTTCTTCCCCAACTTCCTTCCAA TCCATTAAGCACTATTATATTACCTTTCCCAGGAACCCACCAGTGGGGGAGGCTTAGATA TTGGATTTCTTTGTCTTATCCCATGGGAGCTGTGGTGGGGGAGATGACAGGAAAGGAAGA AGAGAGCTAAGTCGTGACCCCACAGAATAAATCCGTAATCTTCCTGAGAAACCCAGAAAT ATCTCCCTTCCTGTCACACTGTGTCCATAGAAAGATCTGTTATTTCCATGACTGCTTTAC TGTATTTTTAAGGTCAACACAATGTACATTTGATAATAAAATAATATTTTCCAAAGAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 5-507, gnl|bosTau2|chrX (48320170-48320672) | |
| 5-507, gnl|canFam2|chrX (1706175-1706612) | |
| 5-507, gnl|danRer3|chr1 (29965081-29965493) | |
| 5-507, gnl|dasNov1|scaffold_299610 (1129-734) | |
| 5-507, gnl|echTel1|scaffold_165439 (1715-2127) | |
| 5-507, gnl|fr1|chrUn (238074088-238073678) | |
| 5-507, gnl|galGal2|chr1 (121357651-121357212) | |
| 5-507, gnl|hg17|chrX (3221107-3221529) | |
| 5-507, gnl|Hg17|chrX (3221613-3221113) | |
| 5-507, gnl|loxAfr1|scaffold_19751 (8393-8809) | |
| 5-507, gnl|mm7|chr3 (59446571-59446981) | |
| 5-507, gnl|Mm7|chr3 (59447065-59446570) | |
| 5-507, gnl|monDom2|scaffold_11 (972975-972539) | |
| 5-507, gnl|oryCun1|scaffold_214468 (275111-275521) | |
| 5-507, gnl|panTro1|chrX (2985313-2985735) | |
| 5-507, gnl|rheMac2|chrX (953838-954260) | |
| 5-507, gnl|rn3|chr2 (148655094-148655504) | |
| 5-507, gnl|tetNig1|chr3 (6898694-6899046) | |
| 5-507, gnl|xenTro1|scaffold_839 (283788-283364) | |
| 761-1032, gnl|bosTau2|chrX (48321222-48321488) | |
| 761-1032, gnl|Hg17|chrX (3220912-3220640) | |
| 1077-1677, gnl|bosTau2|chrX (48321505-48322113) | |
| 1077-1677, gnl|Hg17|chrX (3220623-3219968) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-507, gnl|bosTau2|chrX (48320170-48320672) | |
| 5-507, gnl|canFam2|chrX (1706175-1706612) | |
| 5-507, gnl|danRer3|chr1 (29965081-29965493) | |
| 5-507, gnl|dasNov1|scaffold_299610 (1129-734) | |
| 5-507, gnl|echTel1|scaffold_165439 (1715-2127) | |
| 5-507, gnl|fr1|chrUn (238074088-238073678) | |
| 5-507, gnl|galGal2|chr1 (121357651-121357212) | |
| 5-507, gnl|hg17|chrX (3221107-3221529) | |
| 5-507, gnl|Hg17|chrX (3221613-3221113) | |
| 5-507, gnl|loxAfr1|scaffold_19751 (8393-8809) | |
| 5-507, gnl|mm7|chr3 (59446571-59446981) | |
| 5-507, gnl|Mm7|chr3 (59447065-59446570) | |
| 5-507, gnl|monDom2|scaffold_11 (972975-972539) | |
| 5-507, gnl|oryCun1|scaffold_214468 (275111-275521) | |
| 5-507, gnl|panTro1|chrX (2985313-2985735) | |
| 5-507, gnl|rheMac2|chrX (953838-954260) | |
| 5-507, gnl|rn3|chr2 (148655094-148655504) | |
| 5-507, gnl|tetNig1|chr3 (6898694-6899046) | |
| 5-507, gnl|xenTro1|scaffold_839 (283788-283364) | |
| 761-1032, gnl|bosTau2|chrX (48321222-48321488) | |
| 761-1032, gnl|Hg17|chrX (3220912-3220640) | |
| 1077-1677, gnl|bosTau2|chrX (48321505-48322113) | |
| 1077-1677, gnl|Hg17|chrX (3220623-3219968) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| pla (0.401016) | |
| vin (0.332557) | |
| csp (0.322373) | |
| pty (0.285429) | |
| ese (0.253004) | |
| eep (0.245128) | |
| cly (0.241284) | |
| jca (0.22792) | |
| eye (0.170503) | |
| nco (0.161734) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| nca (0.136874) | |
| bla (0.124347) | |
| eru (0.120048) | |
| med (0.116252) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| vin (0.332557) | |
| csp (0.322373) | |
| pty (0.285429) | |
| ese (0.253004) | |
| eep (0.245128) | |
| cly (0.241284) | |
| jca (0.22792) | |
| eye (0.170503) | |
| nco (0.161734) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| nca (0.136874) | |
| bla (0.124347) | |
| eru (0.120048) | |
| med (0.116252) |