Ss1.1-Pig4-TMW8028E24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTTCTACACCCCATCGACCTGCACCTGCTCTTCAACCTCATAAGTTCTTCCTCGTCCT TCCGCGAGGGTGAGGCCTGGACGCCCGTGTGCCTGCCCAAATTCAACTCAGCTGGTTTCT TCCACGCACACATCTCTTACCTGGAGCCTGACACGGATCTTTGCCTGCTGCTCGTCTCCA CCGACCGCGAGGACTTCTTTGCAGTTTCCGACTGCCGCCGCCGCTTTCAGGAGCGCCTGC GGAAGCGCGGAGCCCACCTGGCACTGCGGGAGGCACTGCGCACGCCATACTACAGTGTTG CCCAAGTGGGCATCCCCGACCTGCGACACTTCCTTTATAAGTCGAAGAGCTCGGGACTCT TCACCAGCCCTGAGATTGAGGCCCCGTACACCAGTGAGGAGGAGCAGGAGCGGCTGCTGG GCCTCTACCAGTACCTGCACAGCCGGGCCCACAATGCCTCCCGCCCACTCAAGACTATCT ACTACACCGGCCCCAACGAAAACCTCCTGGCCTGGGTGACAGGCGCCTTTGAGCTCTACA TGTGCTACAGCCCCCTGGGGACCAAGGCGTCAGCCGTCAGTGCCATCCATAAACTGATGC GCTGGATCCGCAAAGAAGAAGACCGTCTCTTCATCCTCACACCCCTCACGTACTGATAGA ATATGTGTGGGCTCAGCCCTCCTAGGCACACTGGGCTATGGAAACTGTGGGAGCCTCCAG GTGGGGCTGGCCTCTCTTGCCCAGGCAGCAGGCAGGGACTGTGGGTTGGTGTGTGCATTA AAGTGCTCTGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTTCTACACCCCATCGACCTGCACCTGCTCTTCAACCTCATAAGTTCTTCCTCGTCCT TCCGCGAGGGTGAGGCCTGGACGCCCGTGTGCCTGCCCAAATTCAACTCAGCTGGTTTCT TCCACGCACACATCTCTTACCTGGAGCCTGACACGGATCTTTGCCTGCTGCTCGTCTCCA CCGACCGCGAGGACTTCTTTGCAGTTTCCGACTGCCGCCGCCGCTTTCAGGAGCGCCTGC GGAAGCGCGGAGCCCACCTGGCACTGCGGGAGGCACTGCGCACGCCATACTACAGTGTTG CCCAAGTGGGCATCCCCGACCTGCGACACTTCCTTTATAAGTCGAAGAGCTCGGGACTCT TCACCAGCCCTGAGATTGAGGCCCCGTACACCAGTGAGGAGGAGCAGGAGCGGCTGCTGG GCCTCTACCAGTACCTGCACAGCCGGGCCCACAATGCCTCCCGCCCACTCAAGACTATCT ACTACACCGGCCCCAACGAAAACCTCCTGGCCTGGGTGACAGGCGCCTTTGAGCTCTACA TGTGCTACAGCCCCCTGGGGACCAAGGCGTCAGCCGTCAGTGCCATCCATAAACTGATGC GCTGGATCCGCAAAGAAGAAGACCGTCTCTTCATCCTCACACCCCTCACGTACTGATAGA ATATGTGTGGGCTCAGCCCTCCTAGGCACACTGGGCTATGGAAACTGTGGGAGCCTCCAG GTGGGGCTGGCCTCTCTTGCCCAGGCAGCAGGCAGGGACTGTGGGTTGGTGTGTGCATTA AAGTGCTCTGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 554-777, + strand, RNAz p=0.95027 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 554-777, + strand, RNAz p=0.95027 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK092018, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-367, gnl|bosTau2|chr22 (38227048-38226682) | |
| 1-367, gnl|canFam2|chr20 (42381943-42381147) | |
| 1-367, gnl|danRer3|chr11 (37206589-37205791) | |
| 1-367, gnl|dasNov1|scaffold_187757 (3382-4180) | |
| 1-367, gnl|echTel1|scaffold_322644 (99995-100800) | |
| 1-367, gnl|fr1|chrUn (4233943-4233158) | |
| 1-367, gnl|galGal2|chr12 (2268120-2268957) | |
| 1-367, gnl|hg17|chr3 (49922543-49923346) | |
| 1-367, gnl|Hg17|chr3 (49922922-49922556) | |
| 1-367, gnl|loxAfr1|scaffold_15371 (9503-8702) | |
| 1-367, gnl|mm7|chr9 (107633626-107632837) | |
| 1-367, gnl|Mm7|chr9 (107633252-107633618) | |
| 1-367, gnl|monDom2|scaffold_5 (74696455-74695652) | |
| 1-367, gnl|oryCun1|scaffold_191234 (120090-120886) | |
| 1-367, gnl|panTro1|chr2 (51500613-51501416) | |
| 1-367, gnl|rheMac2|chr2 (86495583-86494780) | |
| 1-367, gnl|rn3|chr8 (113189505-113188716) | |
| 1-367, gnl|tetNig1|chr11 (9337423-9336638) | |
| 1-367, gnl|xenTro1|scaffold_189 (78660-77860) | |
| 55-274, gnl|bosTau2|chr18 (5000703-5000487) | |
| 55-274, gnl|Hg17|chr16 (75786198-75786414) | |
| 55-274, gnl|Mm7|chr8 (112238020-112238236) | |
| 515-792, gnl|bosTau2|chr22 (38225413-38225124) | |
| 515-792, gnl|Hg17|chr3 (49921592-49921313) | |
| 515-792, gnl|Mm7|chr9 (107634519-107634785) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-367, gnl|bosTau2|chr22 (38227048-38226682) | |
| 1-367, gnl|canFam2|chr20 (42381943-42381147) | |
| 1-367, gnl|danRer3|chr11 (37206589-37205791) | |
| 1-367, gnl|dasNov1|scaffold_187757 (3382-4180) | |
| 1-367, gnl|echTel1|scaffold_322644 (99995-100800) | |
| 1-367, gnl|fr1|chrUn (4233943-4233158) | |
| 1-367, gnl|galGal2|chr12 (2268120-2268957) | |
| 1-367, gnl|hg17|chr3 (49922543-49923346) | |
| 1-367, gnl|Hg17|chr3 (49922922-49922556) | |
| 1-367, gnl|loxAfr1|scaffold_15371 (9503-8702) | |
| 1-367, gnl|mm7|chr9 (107633626-107632837) | |
| 1-367, gnl|Mm7|chr9 (107633252-107633618) | |
| 1-367, gnl|monDom2|scaffold_5 (74696455-74695652) | |
| 1-367, gnl|oryCun1|scaffold_191234 (120090-120886) | |
| 1-367, gnl|panTro1|chr2 (51500613-51501416) | |
| 1-367, gnl|rheMac2|chr2 (86495583-86494780) | |
| 1-367, gnl|rn3|chr8 (113189505-113188716) | |
| 1-367, gnl|tetNig1|chr11 (9337423-9336638) | |
| 1-367, gnl|xenTro1|scaffold_189 (78660-77860) | |
| 55-274, gnl|bosTau2|chr18 (5000703-5000487) | |
| 55-274, gnl|Hg17|chr16 (75786198-75786414) | |
| 55-274, gnl|Mm7|chr8 (112238020-112238236) | |
| 515-792, gnl|bosTau2|chr22 (38225413-38225124) | |
| 515-792, gnl|Hg17|chr3 (49921592-49921313) | |
| 515-792, gnl|Mm7|chr9 (107634519-107634785) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fbs (0.350693) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| duo (0.172801) | |
| jca (0.11396) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.350693) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| duo (0.172801) | |
| jca (0.11396) |