Non-Coding RNA Search

Ss1.1-Pig4-TMW8028F15.3

Sequence:


               
               GAGTTTTACCTGACTAAATCACTTTGGGGATACAGATCACTGTTATGTGTCTTGAATAGG
GATAATCTTTCTCCTTCAAGGGACTGAGAATTTCCCCAAGAGTAGATACCAGTCTACTTC
ATACCTTTTTCACAAGTGCTGGGCTTTGCACACAAAACACATTCAAGGCTGCTGATAATT
TTCCCTCACTAATACAGTGAATACCTTGCCACTTTCATTTGTAAGCCCACAGATAAACCT
TAACAGCCTATTTCTCTCCAACCTACCTCTCCTTCAGAGCAAAACCCAGGTGCTAAAAGA
ATTTTCTTATGCTATAACAGGATCTCTTTTCTCTGATCCTAATGCTAGAGCATACCTTAT
GATAGAGCAAATGGATTGTGAATTTCAGGTAAGGAAAGTAAAGTTTAGACCGGAAGAAGT
TCCGATAACAGACACTTTTCCTGGTTTTTTTTTTTT------------------------
------------------------------------------------------------
------------GCATCCTTTAACCCACTGCACAGGGCCAGGGTCAACCTGCACCTTTGC
AGTGATCCAAGCCACTGCAATCAGATTCATAACCCACCATGCTGCAGCAGGGACTCCACT
TTTTCATGTTTTAACTGAGTACTTCTCTCACCTTTTCTGCTCAGCCCACCCACACTCTAA
TGTTAGGCTATTATACCTCCCTGCAGCCTCCACCCTGCTGCTTACTAGCCAAGGGAAGAG
GCAAAAAGCATTGGTTGAAATGTTCTCGAAGGATCAGAAAGAACATTCCACTGCTTCCAA
AAATAGAACCCACATCTCACAAAGCCGGTCCAACACTCCATTGGCTCTCACCGGACCTTG
AGACTCCTAAATAGTTGCCTGAAATAGGTTCCAAAATGTCCCCATATAATGTGGCGGAAA
AAATAGGCCTTAATCTAGAACACAATTATGTATGAGTGTAGGGGCTTTCGGAATGGAAAA
TAGATAGACTAGGATGTTTGAAAGTGAATTCTGAATTGCTCTTTTTCTTAGGTTCAAGCT
CCAAAATAAACTCTGGGAACTAAGCATTACTCAGCAGAGAAGCTGCTTAGAAGGAGGGTA
ATTCAGAGATTGGAACAGGGTGGGGGAGCACGCTGGAAAGGTGAAGTCATCATCCTGTGA
TATTCATCCCTGATCATCTCCACAGTAACATGTACAGAGACATGTGCACAGAAAGCTACA
GAAAATACTGTTCTTATCAACCAATCAACCCTGTCTTAGGTCTGAGACTATAGACCCTAA
GAAGCAAACCTTAGAGTCAGCAATGTGATTGTCTTTTTCCCACAGGGATTCTTCAAACTA
ACATACGAGTTATTGGTCTATCTAGCTGCCTTCCTTTATATCCCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTTTTACCTGACTAAATCACTTTGGGGATACAGATCACTGTTATGTGTCTTGAATAGG
GATAATCTTTCTCCTTCAAGGGACTGAGAATTTCCCCAAGAGTAGATACCAGTCTACTTC
ATACCTTTTTCACAAGTGCTGGGCTTTGCACACAAAACACATTCAAGGCTGCTGATAATT
TTCCCTCACTAATACAGTGAATACCTTGCCACTTTCATTTGTAAGCCCACAGATAAACCT
TAACAGCCTATTTCTCTCCAACCTACCTCTCCTTCAGAGCAAAACCCAGGTGCTAAAAGA
ATTTTCTTATGCTATAACAGGATCTCTTTTCTCTGATCCTAATGCTAGAGCATACCTTAT
GATAGAGCAAATGGATTGTGAATTTCAGGTAAGGAAAGTAAAGTTTAGACCGGAAGAAGT
TCCGATAACAGACACTTTTCCTGGTTTTTTTTTTTT------------------------
------------------------------------------------------------
------------GCATCCTTTAACCCACTGCACAGGGCCAGGGTCAACCTGCACCTTTGC
AGTGATCCAAGCCACTGCAATCAGATTCATAACCCACCATGCTGCAGCAGGGACTCCACT
TTTTCATGTTTTAACTGAGTACTTCTCTCACCTTTTCTGCTCAGCCCACCCACACTCTAA
TGTTAGGCTATTATACCTCCCTGCAGCCTCCACCCTGCTGCTTACTAGCCAAGGGAAGAG
GCAAAAAGCATTGGTTGAAATGTTCTCGAAGGATCAGAAAGAACATTCCACTGCTTCCAA
AAATAGAACCCACATCTCACAAAGCCGGTCCAACACTCCATTGGCTCTCACCGGACCTTG
AGACTCCTAAATAGTTGCCTGAAATAGGTTCCAAAATGTCCCCATATAATGTGGCGGAAA
AAATAGGCCTTAATCTAGAACACAATTATGTATGAGTGTAGGGGCTTTCGGAATGGAAAA
TAGATAGACTAGGATGTTTGAAAGTGAATTCTGAATTGCTCTTTTTCTTAGGTTCAAGCT
CCAAAATAAACTCTGGGAACTAAGCATTACTCAGCAGAGAAGCTGCTTAGAAGGAGGGTA
ATTCAGAGATTGGAACAGGGTGGGGGAGCACGCTGGAAAGGTGAAGTCATCATCCTGTGA
TATTCATCCCTGATCATCTCCACAGTAACATGTACAGAGACATGTGCACAGAAAGCTACA
GAAAATACTGTTCTTATCAACCAATCAACCCTGTCTTAGGTCTGAGACTATAGACCCTAA
GAAGCAAACCTTAGAGTCAGCAATGTGATTGTCTTTTTCCCACAGGGATTCTTCAAACTA
ACATACGAGTTATTGGTCTATCTAGCTGCCTTCCTTTATATCCCCAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               737-856, - strand, RNAz p=0.992806
               

               
               1042-1158, - strand, RNAz p=0.897254

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               737-856, - strand, RNAz p=0.992806
               

               
               1042-1158, - strand, RNAz p=0.897254

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-446, gnl|bosTau2|chr3 (16507911-16508355)
               


               
               562-856, gnl|bosTau2|chr3 (16508343-16508641)
               

               
               562-856, gnl|Mm7|chr3 (95095882-95096488)
               


               
               890-1236, gnl|bosTau2|chr3 (16508646-16509009)
               

               
               890-1236, gnl|Hg17|chr1 (147848734-147848371)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-446, gnl|bosTau2|chr3 (16507911-16508355)
               


               
               562-856, gnl|bosTau2|chr3 (16508343-16508641)
               

               
               562-856, gnl|Mm7|chr3 (95095882-95096488)
               


               
               890-1236, gnl|bosTau2|chr3 (16508646-16509009)
               

               
               890-1236, gnl|Hg17|chr1 (147848734-147848371)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	737-856, - strand, RNAz p=0.992806
	1042-1158, - strand, RNAz p=0.897254

	1-446, gnl\|bosTau2\|chr3 (16507911-16508355)

	562-856, gnl\|bosTau2\|chr3 (16508343-16508641)
	562-856, gnl\|Mm7\|chr3 (95095882-95096488)

	890-1236, gnl\|bosTau2\|chr3 (16508646-16509009)
	890-1236, gnl\|Hg17\|chr1 (147848734-147848371)