Non-Coding RNA Search

Ss1.1-Pig4-TMW8028G01.3

Sequence:


               
               TTGCGCAGAGAAGGGCAGTTGAGCGTCTTTGGTACGGAAAGAAGACGAGTACTAGCTACT
GGTCCTTCACAAGGAAGGAATTATCTGTTCAGTAAATATGTTAATATTAAATAAAACAAC
AGGAGTTTTTTCTAACCTATCAAAAGGGAAAAATTATGAATTTTTAAGAAGTTTTAATAT
TCAACCTGGAAAACTATTTCTTCATAAACTAGTGTTGGGAATTGAAACCAGTTGTGATGA
TACAGCAGCTGCTGTTGTGGATGAAACTGGAAATGTTTTGGGAGAAGCAATACATTCCCA
AACTGAGGTTCATTTAAAAACAGGTGGGATTATTCCTCCAGTAGCTCAACAGCTTCATAG
AGAAAATATTCAACGCATAGTGCAAGAAGCTCTCTCTGCCAGTAAAGTCTCTCCAAGTGA
ACTCTCAGCAGTTGCAACTACTGTAAAACCAGGACTTGCTTTAAGCTTGGGAGTAGGCTT
ATTCTTTAGCTTACAACTAGTAGACCAGTTTAAAAAACCCTTCATTCCCATTCATCATAT
GGAGGCTCATGCACTTACCATTAGGTTGACAAATAAAGTAGAATTTCCTTTTTTAGTTCT
TTTGATTTCTGGCGGTCATTGTCTTTTGGCATTAGTTAGAGGAGTTTCAGATTTTCTGCT
TCTTGGAAAGTCTTTGGACATAGCACCAGGTGACATGCTTGACAAGGTAATTATTTAAGA
ATCAATTTCTCCATTGTTTTTTGTTAAGGTGTCTGTTTCAACTAAAATAATAGATGCACT
ACTATTATCTAAATATTTCTGAATGATATAGTAGACTGAAAAAAATTATGTGCAGTAAGG
AAAAAAAAATAGTAGTACATACTTAATAAAATAAGATGTTTGCATCAGTATATAAAGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCGCAGAGAAGGGCAGTTGAGCGTCTTTGGTACGGAAAGAAGACGAGTACTAGCTACT
GGTCCTTCACAAGGAAGGAATTATCTGTTCAGTAAATATGTTAATATTAAATAAAACAAC
AGGAGTTTTTTCTAACCTATCAAAAGGGAAAAATTATGAATTTTTAAGAAGTTTTAATAT
TCAACCTGGAAAACTATTTCTTCATAAACTAGTGTTGGGAATTGAAACCAGTTGTGATGA
TACAGCAGCTGCTGTTGTGGATGAAACTGGAAATGTTTTGGGAGAAGCAATACATTCCCA
AACTGAGGTTCATTTAAAAACAGGTGGGATTATTCCTCCAGTAGCTCAACAGCTTCATAG
AGAAAATATTCAACGCATAGTGCAAGAAGCTCTCTCTGCCAGTAAAGTCTCTCCAAGTGA
ACTCTCAGCAGTTGCAACTACTGTAAAACCAGGACTTGCTTTAAGCTTGGGAGTAGGCTT
ATTCTTTAGCTTACAACTAGTAGACCAGTTTAAAAAACCCTTCATTCCCATTCATCATAT
GGAGGCTCATGCACTTACCATTAGGTTGACAAATAAAGTAGAATTTCCTTTTTTAGTTCT
TTTGATTTCTGGCGGTCATTGTCTTTTGGCATTAGTTAGAGGAGTTTCAGATTTTCTGCT
TCTTGGAAAGTCTTTGGACATAGCACCAGGTGACATGCTTGACAAGGTAATTATTTAAGA
ATCAATTTCTCCATTGTTTTTTGTTAAGGTGTCTGTTTCAACTAAAATAATAGATGCACT
ACTATTATCTAAATATTTCTGAATGATATAGTAGACTGAAAAAAATTATGTGCAGTAAGG
AAAAAAAAATAGTAGTACATACTTAATAAAATAAGATGTTTGCATCAGTATATAAAGGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16550167|dbj|BAB70923.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16550167|dbj|BAB70923.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               392-551, + strand, RNAz p=0.844513

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               392-551, + strand, RNAz p=0.844513

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               313-864, gnl|bosTau2|chr2 (658317-658864)
               

               
               313-864, gnl|Hg17|chr2 (190445798-190445239)
               

               
               313-864, gnl|Mm7|chr1 (53551421-53551916)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               313-864, gnl|bosTau2|chr2 (658317-658864)
               

               
               313-864, gnl|Hg17|chr2 (190445798-190445239)
               

               
               313-864, gnl|Mm7|chr1 (53551421-53551916)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               lin (0.145603)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

	313-864, gnl\|bosTau2\|chr2 (658317-658864)
	313-864, gnl\|Hg17\|chr2 (190445798-190445239)
	313-864, gnl\|Mm7\|chr1 (53551421-53551916)

	lin (0.145603)
	cst (0.140036)
	pla (0.133672)
	ute (0.132784)
	kid (0.129735)
	tra (0.123092)