Ss1.1-Pig4-TMW8028G04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCACTCATCCTGACTCAGAATCCAACTCCAGGTCTGGGTACAATGGTTACTCAACCAGT ATTGAGGCCTGTCCAGGTCATGCAGAATGCCAATCATGTGACAAGTTCCCCTGTGGCTTC ACAACCAATATTCATCACTACACAGGGATTTCCTGTAAGAAATGTCCGGCCTGTACAAAA TGCAATGAATCAGGTTGGGATTGTGCTGAACGTACAGCAAGGCCAAACGGTTAGACCAAT TACACTAGTCCCAGCCCCAGGTACCCAGTTTGTTAAGCCGACAGTTGGAGTCCCACAAGT ATTCTCTCAGATGACCCCTGTGAGGCCAGGCTCCACCATGCCTGTGCGGCCCACCACTAA CACCTTCACCACCGTCATCCCAGCCACTCTCACCATTCGAAGCACCGTCCCACAGTCCCA GTCCCAGCAGACCAAGTCCACTCCTAGCACTTCCACCACTCCCACCGCCACACAGCCGAC CTCACTGGGGCAGCTTGCTGTTCAGCCTCCAGGCCAATCCAACCAGACCCCAAATCCCAA ACTAGTGAGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGAGTTACAGGTGAAAATAG CAATGAAGTGGCCAAACTGGTGAATACCCTCAACACCATCCCTTCCCTGGGCCAGAGCCC TGGGCCAGTGGTGGTATCCAACAACAGCTCTGCCCATGGCTCTCAGAGAACCAGCGGACC TGAGTCTTCAGTGAAAGGTACGATAACCAGAAAGGCTCTGGACAGCCAGTCATTCAAAAA TATTAATAAAAGGAAGTTCCTACTGTGGTGCAGGGGTTAAGGTCTGGTGTTGTCTCCATG GCAGCGCAGGTT------------------------------------------------ ------------TCACTTCCTGGTGTGGAAACTTCCATATGATGTGGATGCGGCCAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCACTCATCCTGACTCAGAATCCAACTCCAGGTCTGGGTACAATGGTTACTCAACCAGT ATTGAGGCCTGTCCAGGTCATGCAGAATGCCAATCATGTGACAAGTTCCCCTGTGGCTTC ACAACCAATATTCATCACTACACAGGGATTTCCTGTAAGAAATGTCCGGCCTGTACAAAA TGCAATGAATCAGGTTGGGATTGTGCTGAACGTACAGCAAGGCCAAACGGTTAGACCAAT TACACTAGTCCCAGCCCCAGGTACCCAGTTTGTTAAGCCGACAGTTGGAGTCCCACAAGT ATTCTCTCAGATGACCCCTGTGAGGCCAGGCTCCACCATGCCTGTGCGGCCCACCACTAA CACCTTCACCACCGTCATCCCAGCCACTCTCACCATTCGAAGCACCGTCCCACAGTCCCA GTCCCAGCAGACCAAGTCCACTCCTAGCACTTCCACCACTCCCACCGCCACACAGCCGAC CTCACTGGGGCAGCTTGCTGTTCAGCCTCCAGGCCAATCCAACCAGACCCCAAATCCCAA ACTAGTGAGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGAGTTACAGGTGAAAATAG CAATGAAGTGGCCAAACTGGTGAATACCCTCAACACCATCCCTTCCCTGGGCCAGAGCCC TGGGCCAGTGGTGGTATCCAACAACAGCTCTGCCCATGGCTCTCAGAGAACCAGCGGACC TGAGTCTTCAGTGAAAGGTACGATAACCAGAAAGGCTCTGGACAGCCAGTCATTCAAAAA TATTAATAAAAGGAAGTTCCTACTGTGGTGCAGGGGTTAAGGTCTGGTGTTGTCTCCATG GCAGCGCAGGTT------------------------------------------------ ------------TCACTTCCTGGTGTGGAAACTTCCATATGATGTGGATGCGGCCAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 253-345, + strand, RNAz p=0.967059 | |
| 291-410, - strand, RNAz p=0.708122 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 253-345, + strand, RNAz p=0.967059 | |
| 291-410, - strand, RNAz p=0.708122 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-146, gnl|bosTau2|chr3 (11655654-11655799) | |
| 1-146, gnl|canFam2|chr17 (63565059-63565257) | |
| 1-146, gnl|dasNov1|scaffold_88369 (1040-842) | |
| 1-146, gnl|echTel1|scaffold_60917 (149-347) | |
| 1-146, gnl|galGal2|chrUn (97067490-97067295) | |
| 1-146, gnl|hg17|chr1 (148216210-148216407) | |
| 1-146, gnl|Hg17|chr1 (148216359-148216214) | |
| 1-146, gnl|loxAfr1|scaffold_824 (132832-132634) | |
| 1-146, gnl|mm7|chr3 (94734927-94734729) | |
| 1-146, gnl|Mm7|chr3 (94734776-94734921) | |
| 1-146, gnl|monDom2|scaffold_44 (4625979-4626177) | |
| 1-146, gnl|oryCun1|scaffold_153661 (2249-2051) | |
| 1-146, gnl|panTro1|chr1 (129967363-129967560) | |
| 1-146, gnl|rheMac2|chr1 (129866708-129866905) | |
| 1-146, gnl|rn3|chr2 (189708938-189708740) | |
| 1-146, gnl|xenTro1|scaffold_918 (109991-110187) | |
| 253-545, gnl|bosTau2|chr3 (11657962-11658254) | |
| 253-545, gnl|canFam2|chr17 (63561415-63561760) | |
| 253-545, gnl|dasNov1|scaffold_88369 (3804-3459) | |
| 253-545, gnl|echTel1|scaffold_325328 (45093-44749) | |
| 253-545, gnl|galGal2|chrUn (97069089-97068743) | |
| 253-545, gnl|hg17|chr1 (148213648-148213988) | |
| 253-545, gnl|Hg17|chr1 (148213964-148213672) | |
| 253-545, gnl|loxAfr1|scaffold_824 (135406-135061) | |
| 253-545, gnl|mm7|chr3 (94738352-94738008) | |
| 253-545, gnl|Mm7|chr3 (94738034-94738327) | |
| 253-545, gnl|monDom2|scaffold_44 (4620588-4620936) | |
| 253-545, gnl|oryCun1|scaffold_153661 (4923-4582) | |
| 253-545, gnl|panTro1|chr1 (129964797-129965137) | |
| 253-545, gnl|rheMac2|chr1 (129864149-129864489) | |
| 253-545, gnl|rn3|chr2 (189712319-189711974) | |
| 253-545, gnl|xenTro1|scaffold_918 (109179-109524) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-146, gnl|bosTau2|chr3 (11655654-11655799) | |
| 1-146, gnl|canFam2|chr17 (63565059-63565257) | |
| 1-146, gnl|dasNov1|scaffold_88369 (1040-842) | |
| 1-146, gnl|echTel1|scaffold_60917 (149-347) | |
| 1-146, gnl|galGal2|chrUn (97067490-97067295) | |
| 1-146, gnl|hg17|chr1 (148216210-148216407) | |
| 1-146, gnl|Hg17|chr1 (148216359-148216214) | |
| 1-146, gnl|loxAfr1|scaffold_824 (132832-132634) | |
| 1-146, gnl|mm7|chr3 (94734927-94734729) | |
| 1-146, gnl|Mm7|chr3 (94734776-94734921) | |
| 1-146, gnl|monDom2|scaffold_44 (4625979-4626177) | |
| 1-146, gnl|oryCun1|scaffold_153661 (2249-2051) | |
| 1-146, gnl|panTro1|chr1 (129967363-129967560) | |
| 1-146, gnl|rheMac2|chr1 (129866708-129866905) | |
| 1-146, gnl|rn3|chr2 (189708938-189708740) | |
| 1-146, gnl|xenTro1|scaffold_918 (109991-110187) | |
| 253-545, gnl|bosTau2|chr3 (11657962-11658254) | |
| 253-545, gnl|canFam2|chr17 (63561415-63561760) | |
| 253-545, gnl|dasNov1|scaffold_88369 (3804-3459) | |
| 253-545, gnl|echTel1|scaffold_325328 (45093-44749) | |
| 253-545, gnl|galGal2|chrUn (97069089-97068743) | |
| 253-545, gnl|hg17|chr1 (148213648-148213988) | |
| 253-545, gnl|Hg17|chr1 (148213964-148213672) | |
| 253-545, gnl|loxAfr1|scaffold_824 (135406-135061) | |
| 253-545, gnl|mm7|chr3 (94738352-94738008) | |
| 253-545, gnl|Mm7|chr3 (94738034-94738327) | |
| 253-545, gnl|monDom2|scaffold_44 (4620588-4620936) | |
| 253-545, gnl|oryCun1|scaffold_153661 (4923-4582) | |
| 253-545, gnl|panTro1|chr1 (129964797-129965137) | |
| 253-545, gnl|rheMac2|chr1 (129864149-129864489) | |
| 253-545, gnl|rn3|chr2 (189712319-189711974) | |
| 253-545, gnl|xenTro1|scaffold_918 (109179-109524) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |