Non-Coding RNA Search

Ss1.1-Pig4-TMW8028G06.3

Sequence:


               
               GCGGCCGCCGCTTCTTTCACACTTGAGTTGGGAGCCGCGCGCCGCGCTCAGTTACTGGCG
AGCTGGCCGCGCGCCGCCGCCTCCCGCACGCACGCACGCACGCGGGCCGGGCTTCGGGGG
CTTAGGCTCTTACTCCCGGCAGCTGGGAGGAGGGGGAGACCCCGTCTGACTGTGGGGAGG
AGGAGGAAGAGGAGGAGGAGGGAGGAAGAAAACAGGCGAGGAGCACCCGGGCGGGGGGCG
GGAGGCTTGCCACCTTCAGCCCCCCCGCGAGCGCCCAAGGTGCACACATCCTGACCGACT
CAGCAAGCAGGTGGATTTTCTTTGTGTCTAAAGAAAAAGAAAATGTCCCCGTGTCTGTAG
AGATGATTTGCAGTTCAGCCCGGCTGAAGCTGACCGAATGAGACTATGGGCTGTGCCTCC
GCCAAGCATGTTGCCACTGTTCAAAATGAAGAGGAAGCCCAGAAAGGGAAGAACTACCAG
AACGGAGATGTGTTTGGTGATGAGTATAGGATCAAACCGGTGGAAGAGGTCAAATACATG
AAAAATGGGGCAGAAGAGGAGCAGAAAATAGCAGCCAGGAACCAAGAAAACTTGGAAAAA
AGTGCCAGTTCAAATGTCAGACTTAAAACCAATAAAGAGATTCCGGGATTAGTTCATCAG
CCCAGAGCAAACATGCACATCTCTGAAAGCCAACAAGAATTCTTCAGAATGCTGGATGAA
AAAATCGAGAAGGGTCGAGATTACTGTTCCGAAGAAGAGGATATCACATAGCACCAATTC
TACCACTTAAACCGGGAGCTACTACTGTGTAAATAGGTTACACCCCAGTTGAAATCTTTG
CAAAGGTCGGTTCTCTTCAGCGAACAGCACTATAGCAAAAGAAGATCGTTTCATATCGTA
TGCCCCATTAAATTACAGTGTTTCTTAATGAACTTGCAAAGGAATATTGCTAAAAAAAAA
AAAACAAAAAACAAAAAACTGTTCTCGAACTTTCTTTGTTGCTGCTAGTTAAAACTTGTT
GCAACTTTTCACTTCTCTCAATGTCCAGGTCTGCAGCAAAACTCTGCAGTTTCACCTTAA
AGATACTGTTGGTTTTACAGATGCTCTCCAGCCTATTTTCTATAAGAGGAGGTAGTGGGG
AACTCAGATATCCAGCTTCTGTTCTAGACCGGTTCCACTCCCAACACAAGCGCCTCTTCC
CCTCTCTCCTTCCTCCCTGCCTCCCCTGAGCAGCCCAAAGCCTTGCTTCTCCCTGGCAGT
GTCGCGCTTTGGAGATGGGATGGTTGCTATGGCAAAGCCTTGTTTCTCTGCTAAGAAGAA
ATAGAGACGCTATTATCGATTAAAAGCATGTGGTGACATGACTCCCGGAGGTGACACAGG
AGCGAGCGGCAGGTTGTTTCATGTCCTGGGTCTCCTACTCAAAGGTCACGCTTGCAACAT
CAGTTTTGCTCAGATGCAGATGGAAGTGTGACCGCAATCATTTCGAATCCTTCTTGCCCA
CTTTTTTTTTCTAAGGAAATAAACATTGTACTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCCGCTTCTTTCACACTTGAGTTGGGAGCCGCGCGCCGCGCTCAGTTACTGGCG
AGCTGGCCGCGCGCCGCCGCCTCCCGCACGCACGCACGCACGCGGGCCGGGCTTCGGGGG
CTTAGGCTCTTACTCCCGGCAGCTGGGAGGAGGGGGAGACCCCGTCTGACTGTGGGGAGG
AGGAGGAAGAGGAGGAGGAGGGAGGAAGAAAACAGGCGAGGAGCACCCGGGCGGGGGGCG
GGAGGCTTGCCACCTTCAGCCCCCCCGCGAGCGCCCAAGGTGCACACATCCTGACCGACT
CAGCAAGCAGGTGGATTTTCTTTGTGTCTAAAGAAAAAGAAAATGTCCCCGTGTCTGTAG
AGATGATTTGCAGTTCAGCCCGGCTGAAGCTGACCGAATGAGACTATGGGCTGTGCCTCC
GCCAAGCATGTTGCCACTGTTCAAAATGAAGAGGAAGCCCAGAAAGGGAAGAACTACCAG
AACGGAGATGTGTTTGGTGATGAGTATAGGATCAAACCGGTGGAAGAGGTCAAATACATG
AAAAATGGGGCAGAAGAGGAGCAGAAAATAGCAGCCAGGAACCAAGAAAACTTGGAAAAA
AGTGCCAGTTCAAATGTCAGACTTAAAACCAATAAAGAGATTCCGGGATTAGTTCATCAG
CCCAGAGCAAACATGCACATCTCTGAAAGCCAACAAGAATTCTTCAGAATGCTGGATGAA
AAAATCGAGAAGGGTCGAGATTACTGTTCCGAAGAAGAGGATATCACATAGCACCAATTC
TACCACTTAAACCGGGAGCTACTACTGTGTAAATAGGTTACACCCCAGTTGAAATCTTTG
CAAAGGTCGGTTCTCTTCAGCGAACAGCACTATAGCAAAAGAAGATCGTTTCATATCGTA
TGCCCCATTAAATTACAGTGTTTCTTAATGAACTTGCAAAGGAATATTGCTAAAAAAAAA
AAAACAAAAAACAAAAAACTGTTCTCGAACTTTCTTTGTTGCTGCTAGTTAAAACTTGTT
GCAACTTTTCACTTCTCTCAATGTCCAGGTCTGCAGCAAAACTCTGCAGTTTCACCTTAA
AGATACTGTTGGTTTTACAGATGCTCTCCAGCCTATTTTCTATAAGAGGAGGTAGTGGGG
AACTCAGATATCCAGCTTCTGTTCTAGACCGGTTCCACTCCCAACACAAGCGCCTCTTCC
CCTCTCTCCTTCCTCCCTGCCTCCCCTGAGCAGCCCAAAGCCTTGCTTCTCCCTGGCAGT
GTCGCGCTTTGGAGATGGGATGGTTGCTATGGCAAAGCCTTGTTTCTCTGCTAAGAAGAA
ATAGAGACGCTATTATCGATTAAAAGCATGTGGTGACATGACTCCCGGAGGTGACACAGG
AGCGAGCGGCAGGTTGTTTCATGTCCTGGGTCTCCTACTCAAAGGTCACGCTTGCAACAT
CAGTTTTGCTCAGATGCAGATGGAAGTGTGACCGCAATCATTTCGAATCCTTCTTGCCCA
CTTTTTTTTTCTAAGGAAATAAACATTGTACTGTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|32442334|gb|AAP82231.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32442334|gb|AAP82231.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               411-610, - strand, RNAz p=0.961471
               

               
               971-1090, - strand, RNAz p=0.795549
               

               
               1211-1330, - strand, RNAz p=0.914348

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               411-610, - strand, RNAz p=0.961471
               

               
               971-1090, - strand, RNAz p=0.795549
               

               
               1211-1330, - strand, RNAz p=0.914348

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               19-1536, gnl|bosTau2|chr12 (10090357-10091859)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-1536, gnl|bosTau2|chr12 (10090357-10091859)

Expressed library(ies): 41 entry(ies)

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Expressed library(ies): 41 entry(ies)

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               ldo (2.13406)
               

               
               isp (2.10526)
               

               
               hea (1.84049)
               

               
               sme (1.22175)
               

               
               ste (1.08167)
               

               
               bfe (1.049)
               

               
               vin (0.997672)
               

               
               ssp (0.813118)
               

               
               mgm (0.721371)
               

               
               mas (0.42061)
               

               
               che (0.408942)
               

               
               aor (0.390549)
               

               
               bla (0.373042)
               

               
               sto (0.359648)
               

               
               jca (0.34188)
               

               
               ski (0.29347)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

Expressed library(ies): 41 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (2.13406)
               

               
               isp (2.10526)
               

               
               hea (1.84049)
               

               
               sme (1.22175)
               

               
               ste (1.08167)
               

               
               bfe (1.049)
               

               
               vin (0.997672)
               

               
               ssp (0.813118)
               

               
               mgm (0.721371)
               

               
               mas (0.42061)
               

               
               che (0.408942)
               

               
               aor (0.390549)
               

               
               bla (0.373042)
               

               
               sto (0.359648)
               

               
               jca (0.34188)
               

               
               ski (0.29347)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

	411-610, - strand, RNAz p=0.961471
	971-1090, - strand, RNAz p=0.795549
	1211-1330, - strand, RNAz p=0.914348

	ldo (2.13406)
	isp (2.10526)
	hea (1.84049)
	sme (1.22175)
	ste (1.08167)
	bfe (1.049)
	vin (0.997672)
	ssp (0.813118)
	mgm (0.721371)
	mas (0.42061)
	che (0.408942)
	aor (0.390549)
	bla (0.373042)
	sto (0.359648)
	jca (0.34188)
	ski (0.29347)
	csk (0.281492)
	nca (0.273748)
	lyg (0.266205)
	mgp (0.230681)
	ecc (0.23007)
	ece (0.229305)
	tes (0.207814)
	nlu (0.191681)
	gul (0.177588)
	rec (0.17307)
	mcp (0.170648)
	eye (0.170503)
	cut (0.169924)
	cje (0.165235)
	mga (0.160205)
	fat (0.147427)
	pty (0.142714)
	cst (0.140036)
	hlv (0.139256)
	pla (0.133672)
	ova (0.129132)
	ret (0.128733)
	ese (0.126502)
	eep (0.122564)
	spc (0.113366)