Ss1.1-Pig4-TMW8028G23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTCCTCCCGGGGCTGCGGCGAGCCGGGCCGGCCAGCGTCCCCACCCTGCGCGCTCCCTC CCCACCGCCGCTGCCGGGGCGGGGGAAAGCGAAACCAAAGCGACCCTTCCACTCCGCGCC GGCAGGCCGGGTGCATCGAGGCCGCGATCGTCCAGCCGCGGAGCGGGGAGCGGCGAGCAC CCGCCCGAGGGTCCCGGGTCTTCCGGCTGCTTACTGCGGCTGCGGGGGCGGCGGCGGTGC TCCTCCCTCCTTTCCCCTCCCGCCACCCGCCGCCCGGCCGGTGAGCGGTGCGCAGGATGG GCAGGTGCTGCTTCTACGCGGTGGGGACGCTGTCCCTGCTCCTGCTGGTGACCAGCGTCA CGCTGCTGGTGGCCAGAGTCTTCCAGAAGGCCGTGGACCAGGCGATCGAGAAGAATATTG TGTTGAGGAATGGTTCCGAGACCTTTGACTCCTGGAAGAAGCCCCCTCTGCCCGTGTACA TCCAGTTCTATTTCTTCAATGTCACCAATCCAGAGGAGATCCTCAGTGGGGAGATCCCTC GGGTGGAAGAAGTGGGGCCATACACCTACAGGGAACTCAGAAACAAAGCAGACATTCAAT TTGGAGATAATGGGACGACGATATCTGCCGTCAGCAACAAGGCCTATGTTTTTGAACGAG ACAAGTCTGTTGGAGACCCTAAAACCGACTTACTTAGAACATTAAATATCCCTGCGTTGA CCGCCATGGAATGGACCCACCTGCCCCTGCTCCGCGAGATCATCGAAGCCCTGTTGAGGG CCTATCGTCAGAAGCTCTTTGTGACTCACACAGTGGATGAATTGCTTTGGGGCTACAAAG ATGAAATCTTGTCCCTCATCAACATTTTGGAACCCGACATCTCTCCCTATTTTGGCCTGT TCTATGGGAAAAATGGCACTAACGATGGAGACTACGTCTTTCTAACTGGAGAAGACAATT ACCTTAACTTTTCCAAAATTGTGGAATGGAATGGAAAAACGTCTCTTGACTGGTGGACTG CAGACACGTGCAATATGATCAACGGGACGGACGGAGATTCTTTTCACCCATTGATCACTA AAGACGAGGTCCTTTATGTCTTCCCATCTGATTTTTGCAGGTCAGTGTATATAACTTTCA GTGACTTCGAGCGTGTACAGGGGCTTCCTGCCTTGCGGTATAAGGTGCCTGCAGAAATAT TAGCCAACACCTCAGACAACGCTGGCTTCTGTATACCTAAAGGAAACTGCCTGGGCTCAG GAGTCCTGAATGTCAGCGTGTGCAAGAATGGTGCACCTATTATTATGTCTTTCCCACACT TCTACCAAGCAGATGAGAAGTTCGTTTCTGCCATAGATGGCATGCATCCAAATAAGGAAT ATCATGAGACCTTTGTGGACATTAATCCGTTGACTGGAATTATCCTAAGAGCAGCCAAGA GGTTCCAAATCAATGTTTATGTCAGAAAATTAGATGACTTTATTGAAACAGGAAACATTA GAACCCTGGTTTTCCCAGTGATGTATCTCAATGAGAGCGTTCTCATTGATAAAGAGACTG CAAGTCGCCTGAAGTCTGTGGTCAACACCACTATGGTCATCACCAACATCCCCTACATTA TCCTGGCACTCGGTGTGTTCTTCGGTCTGATCTTCACCTGGCTCGTGTGCAGAGGACAGG GATCCATGGATGAGGGAACTGCAGACGAACGAGCACCCCTCATACGAACCTAATGTGGCA GCGCTTGGGGAAGGAAGTGTGCGAGCTGTCGTGACCCGGACTACGACATGGGGCAACTGT CTGCGTCCTCAACTTGTCGCCTGGGGTGAGAGGAGGGAGGAGACGCCCATCGGTGGGATG AGCGCCTTCCAGCAGAGGTTCAAGAACAGACTGGCCTGCGTGGCCATCAGGCTTTCTTCA AGCCAGTGGTCCCTGACAGATTCTGTTTTTCATGTGTGTAGCAAGTATTTAATAAACTCT TGTATAGTAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTCCTCCCGGGGCTGCGGCGAGCCGGGCCGGCCAGCGTCCCCACCCTGCGCGCTCCCTC CCCACCGCCGCTGCCGGGGCGGGGGAAAGCGAAACCAAAGCGACCCTTCCACTCCGCGCC GGCAGGCCGGGTGCATCGAGGCCGCGATCGTCCAGCCGCGGAGCGGGGAGCGGCGAGCAC CCGCCCGAGGGTCCCGGGTCTTCCGGCTGCTTACTGCGGCTGCGGGGGCGGCGGCGGTGC TCCTCCCTCCTTTCCCCTCCCGCCACCCGCCGCCCGGCCGGTGAGCGGTGCGCAGGATGG GCAGGTGCTGCTTCTACGCGGTGGGGACGCTGTCCCTGCTCCTGCTGGTGACCAGCGTCA CGCTGCTGGTGGCCAGAGTCTTCCAGAAGGCCGTGGACCAGGCGATCGAGAAGAATATTG TGTTGAGGAATGGTTCCGAGACCTTTGACTCCTGGAAGAAGCCCCCTCTGCCCGTGTACA TCCAGTTCTATTTCTTCAATGTCACCAATCCAGAGGAGATCCTCAGTGGGGAGATCCCTC GGGTGGAAGAAGTGGGGCCATACACCTACAGGGAACTCAGAAACAAAGCAGACATTCAAT TTGGAGATAATGGGACGACGATATCTGCCGTCAGCAACAAGGCCTATGTTTTTGAACGAG ACAAGTCTGTTGGAGACCCTAAAACCGACTTACTTAGAACATTAAATATCCCTGCGTTGA CCGCCATGGAATGGACCCACCTGCCCCTGCTCCGCGAGATCATCGAAGCCCTGTTGAGGG CCTATCGTCAGAAGCTCTTTGTGACTCACACAGTGGATGAATTGCTTTGGGGCTACAAAG ATGAAATCTTGTCCCTCATCAACATTTTGGAACCCGACATCTCTCCCTATTTTGGCCTGT TCTATGGGAAAAATGGCACTAACGATGGAGACTACGTCTTTCTAACTGGAGAAGACAATT ACCTTAACTTTTCCAAAATTGTGGAATGGAATGGAAAAACGTCTCTTGACTGGTGGACTG CAGACACGTGCAATATGATCAACGGGACGGACGGAGATTCTTTTCACCCATTGATCACTA AAGACGAGGTCCTTTATGTCTTCCCATCTGATTTTTGCAGGTCAGTGTATATAACTTTCA GTGACTTCGAGCGTGTACAGGGGCTTCCTGCCTTGCGGTATAAGGTGCCTGCAGAAATAT TAGCCAACACCTCAGACAACGCTGGCTTCTGTATACCTAAAGGAAACTGCCTGGGCTCAG GAGTCCTGAATGTCAGCGTGTGCAAGAATGGTGCACCTATTATTATGTCTTTCCCACACT TCTACCAAGCAGATGAGAAGTTCGTTTCTGCCATAGATGGCATGCATCCAAATAAGGAAT ATCATGAGACCTTTGTGGACATTAATCCGTTGACTGGAATTATCCTAAGAGCAGCCAAGA GGTTCCAAATCAATGTTTATGTCAGAAAATTAGATGACTTTATTGAAACAGGAAACATTA GAACCCTGGTTTTCCCAGTGATGTATCTCAATGAGAGCGTTCTCATTGATAAAGAGACTG CAAGTCGCCTGAAGTCTGTGGTCAACACCACTATGGTCATCACCAACATCCCCTACATTA TCCTGGCACTCGGTGTGTTCTTCGGTCTGATCTTCACCTGGCTCGTGTGCAGAGGACAGG GATCCATGGATGAGGGAACTGCAGACGAACGAGCACCCCTCATACGAACCTAATGTGGCA GCGCTTGGGGAAGGAAGTGTGCGAGCTGTCGTGACCCGGACTACGACATGGGGCAACTGT CTGCGTCCTCAACTTGTCGCCTGGGGTGAGAGGAGGGAGGAGACGCCCATCGGTGGGATG AGCGCCTTCCAGCAGAGGTTCAAGAACAGACTGGCCTGCGTGGCCATCAGGCTTTCTTCA AGCCAGTGGTCCCTGACAGATTCTGTTTTTCATGTGTGTAGCAAGTATTTAATAAACTCT TGTATAGTAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 412-1292, - strand, RNAz p=0.886394 | |
| 452-572, + strand, RNAz p=0.826666 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 412-1292, - strand, RNAz p=0.886394 | |
| 452-572, + strand, RNAz p=0.826666 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 65-411, gnl|bosTau2|chr6 (47370484-47370131) | |
| 65-411, gnl|Hg17|chr4 (77492129-77491760) | |
| 65-411, gnl|Mm7|chr5 (92492782-92492441) | |
| 412-572, gnl|bosTau2|chr6 (47345883-47345723) | |
| 412-572, gnl|canFam2|chr32 (3808143-3808351) | |
| 412-572, gnl|danRer3|chrNA (188804005-188804188) | |
| 412-572, gnl|dasNov1|scaffold_62616 (3596-3389) | |
| 412-572, gnl|echTel1|scaffold_42814 (964-761) | |
| 412-572, gnl|fr1|chrUn (197392450-197392263) | |
| 412-572, gnl|hg17|chr4 (77474016-77474220) | |
| 412-572, gnl|Hg17|chr4 (77474198-77474038) | |
| 412-572, gnl|loxAfr1|scaffold_34426 (2773-2976) | |
| 412-572, gnl|mm7|chr5 (92472426-92472629) | |
| 412-572, gnl|Mm7|chr5 (92472603-92472443) | |
| 412-572, gnl|monDom2|scaffold_32 (29542586-29542793) | |
| 412-572, gnl|panTro1|chr3 (56250960-56250756) | |
| 412-572, gnl|rheMac2|chr5 (53396636-53396434) | |
| 412-572, gnl|rn3|chr14 (17140366-17140152) | |
| 412-572, gnl|tetNig1|chr4 (1229618-1229454) | |
| 719-908, gnl|bosTau2|chr6 (47322859-47322670) | |
| 719-908, gnl|Hg17|chr4 (77458038-77457849) | |
| 719-908, gnl|Mm7|chr5 (92448190-92448001) | |
| 1118-1292, gnl|bosTau2|chr6 (47306485-47306311) | |
| 1118-1292, gnl|canFam2|chr32 (3771825-3771978) | |
| 1118-1292, gnl|danRer3|chr5 (58586206-58586058) | |
| 1118-1292, gnl|dasNov1|scaffold_212065 (1579-1732) | |
| 1118-1292, gnl|fr1|chrUn (107535576-107535721) | |
| 1118-1292, gnl|hg17|chr4 (77452459-77452612) | |
| 1118-1292, gnl|Hg17|chr4 (77452648-77452474) | |
| 1118-1292, gnl|mm7|chr5 (92441270-92441423) | |
| 1118-1292, gnl|Mm7|chr5 (92441459-92441285) | |
| 1118-1292, gnl|monDom2|scaffold_32 (29507885-29508036) | |
| 1118-1292, gnl|oryCun1|scaffold_182683 (4786-4939) | |
| 1118-1292, gnl|panTro1|chr3 (56272704-56272551) | |
| 1118-1292, gnl|rheMac2|chr5 (53418137-53417983) | |
| 1118-1292, gnl|rn3|chr14 (17162457-17162304) | |
| 1118-1292, gnl|tetNig1|chr4 (1231264-1231123) | |
| 1693-1984, gnl|bosTau2|chr6 (47291749-47291449) | |
| 1693-1984, gnl|canFam2|chr32 (3754908-3755277) | |
| 1693-1984, gnl|dasNov1|scaffold_33651 (5987-6368) | |
| 1693-1984, gnl|echTel1|scaffold_249278 (3035-3399) | |
| 1693-1984, gnl|hg17|chr4 (77439785-77440157) | |
| 1693-1984, gnl|Hg17|chr4 (77440085-77439790) | |
| 1693-1984, gnl|loxAfr1|scaffold_191538 (1246-852) | |
| 1693-1984, gnl|mm7|chr5 (92431240-92431609) | |
| 1693-1984, gnl|Mm7|chr5 (92431533-92431243) | |
| 1693-1984, gnl|monDom2|scaffold_32 (29483678-29484148) | |
| 1693-1984, gnl|panTro1|chr3 (56285254-56284882) | |
| 1693-1984, gnl|rheMac2|chr5 (53431152-53430776) | |
| 1693-1984, gnl|rn3|chr14 (17170846-17170482) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 65-411, gnl|bosTau2|chr6 (47370484-47370131) | |
| 65-411, gnl|Hg17|chr4 (77492129-77491760) | |
| 65-411, gnl|Mm7|chr5 (92492782-92492441) | |
| 412-572, gnl|bosTau2|chr6 (47345883-47345723) | |
| 412-572, gnl|canFam2|chr32 (3808143-3808351) | |
| 412-572, gnl|danRer3|chrNA (188804005-188804188) | |
| 412-572, gnl|dasNov1|scaffold_62616 (3596-3389) | |
| 412-572, gnl|echTel1|scaffold_42814 (964-761) | |
| 412-572, gnl|fr1|chrUn (197392450-197392263) | |
| 412-572, gnl|hg17|chr4 (77474016-77474220) | |
| 412-572, gnl|Hg17|chr4 (77474198-77474038) | |
| 412-572, gnl|loxAfr1|scaffold_34426 (2773-2976) | |
| 412-572, gnl|mm7|chr5 (92472426-92472629) | |
| 412-572, gnl|Mm7|chr5 (92472603-92472443) | |
| 412-572, gnl|monDom2|scaffold_32 (29542586-29542793) | |
| 412-572, gnl|panTro1|chr3 (56250960-56250756) | |
| 412-572, gnl|rheMac2|chr5 (53396636-53396434) | |
| 412-572, gnl|rn3|chr14 (17140366-17140152) | |
| 412-572, gnl|tetNig1|chr4 (1229618-1229454) | |
| 719-908, gnl|bosTau2|chr6 (47322859-47322670) | |
| 719-908, gnl|Hg17|chr4 (77458038-77457849) | |
| 719-908, gnl|Mm7|chr5 (92448190-92448001) | |
| 1118-1292, gnl|bosTau2|chr6 (47306485-47306311) | |
| 1118-1292, gnl|canFam2|chr32 (3771825-3771978) | |
| 1118-1292, gnl|danRer3|chr5 (58586206-58586058) | |
| 1118-1292, gnl|dasNov1|scaffold_212065 (1579-1732) | |
| 1118-1292, gnl|fr1|chrUn (107535576-107535721) | |
| 1118-1292, gnl|hg17|chr4 (77452459-77452612) | |
| 1118-1292, gnl|Hg17|chr4 (77452648-77452474) | |
| 1118-1292, gnl|mm7|chr5 (92441270-92441423) | |
| 1118-1292, gnl|Mm7|chr5 (92441459-92441285) | |
| 1118-1292, gnl|monDom2|scaffold_32 (29507885-29508036) | |
| 1118-1292, gnl|oryCun1|scaffold_182683 (4786-4939) | |
| 1118-1292, gnl|panTro1|chr3 (56272704-56272551) | |
| 1118-1292, gnl|rheMac2|chr5 (53418137-53417983) | |
| 1118-1292, gnl|rn3|chr14 (17162457-17162304) | |
| 1118-1292, gnl|tetNig1|chr4 (1231264-1231123) | |
| 1693-1984, gnl|bosTau2|chr6 (47291749-47291449) | |
| 1693-1984, gnl|canFam2|chr32 (3754908-3755277) | |
| 1693-1984, gnl|dasNov1|scaffold_33651 (5987-6368) | |
| 1693-1984, gnl|echTel1|scaffold_249278 (3035-3399) | |
| 1693-1984, gnl|hg17|chr4 (77439785-77440157) | |
| 1693-1984, gnl|Hg17|chr4 (77440085-77439790) | |
| 1693-1984, gnl|loxAfr1|scaffold_191538 (1246-852) | |
| 1693-1984, gnl|mm7|chr5 (92431240-92431609) | |
| 1693-1984, gnl|Mm7|chr5 (92431533-92431243) | |
| 1693-1984, gnl|monDom2|scaffold_32 (29483678-29484148) | |
| 1693-1984, gnl|panTro1|chr3 (56285254-56284882) | |
| 1693-1984, gnl|rheMac2|chr5 (53431152-53430776) | |
| 1693-1984, gnl|rn3|chr14 (17170846-17170482) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| amn (0.417711) | |
| nje (0.33184) | |
| cga (0.279096) | |
| cov (0.264306) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| nje (0.33184) | |
| cga (0.279096) | |
| cov (0.264306) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| nbm (0.0993246) |