Non-Coding RNA Search

Ss1.1-Pig4-TMW8028H11.3

Sequence:


               
               ATGCTGTGGTTTCCTGAGGCCATGTGTCCACCTTCCATCCCCTGACCAGGTGGACCTCCT
GACGCGGTCCTGCCCCGGGCCCCTGTCCCTTGCTTGACTCCTGCCCTTATTCCCCATTCC
GCTCTCTCTGGCCCATCTGCAGGCCCGCCGTCCCCGCCCTCACCAGCGCCCCCCGCAGGC
TCGGCGGCCTCCACGCTCCAGCCCGGCCCGCAGCTCTACGACGTGATGGACGCGGTGCCA
GCGAGGCGCTGGAAGGAGTTCGTGCGGACGTTGGGGCTCCGCGAGGCGGAGATCGAGGCG
GTGGAGGTGGAGGTCGGCCGCTTCCGCGACCAACAGTACGAGATGCTCAAGCGCTGGCGC
CAGCAGCAGCCCGCCGGCCTGGCCGCCGTCTACGCGGCCCTGGAACGCATGGGGCTGGAT
GGCTGCGCCGAGGACCTGCGGAGCCGCCTGCAGCGTGGCCCGTGACGCTAGGGCCCACCC
ACTAGCTCGGGGCTCTGGTAGCCCTTGCAGAAGCCCTAAGTACGGTTACTTATGCGTGTA
GACATTTAATGTCACTTATTAAGCCCCTGGCACGGCCCTGCGTAGCAGCGCCAGCCAGCC
TCACCCCTGCGCGCCCCCAGGGTTCCAGCTAAGGCGAGGAAGCATCAGCGTTGAGGCTCG
GGAGGGCGTTGAGATTGCTCAGCTGTTTCTCCGCCCGAGTTTGGCCAAGGCCTTGGTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCTGTGGTTTCCTGAGGCCATGTGTCCACCTTCCATCCCCTGACCAGGTGGACCTCCT
GACGCGGTCCTGCCCCGGGCCCCTGTCCCTTGCTTGACTCCTGCCCTTATTCCCCATTCC
GCTCTCTCTGGCCCATCTGCAGGCCCGCCGTCCCCGCCCTCACCAGCGCCCCCCGCAGGC
TCGGCGGCCTCCACGCTCCAGCCCGGCCCGCAGCTCTACGACGTGATGGACGCGGTGCCA
GCGAGGCGCTGGAAGGAGTTCGTGCGGACGTTGGGGCTCCGCGAGGCGGAGATCGAGGCG
GTGGAGGTGGAGGTCGGCCGCTTCCGCGACCAACAGTACGAGATGCTCAAGCGCTGGCGC
CAGCAGCAGCCCGCCGGCCTGGCCGCCGTCTACGCGGCCCTGGAACGCATGGGGCTGGAT
GGCTGCGCCGAGGACCTGCGGAGCCGCCTGCAGCGTGGCCCGTGACGCTAGGGCCCACCC
ACTAGCTCGGGGCTCTGGTAGCCCTTGCAGAAGCCCTAAGTACGGTTACTTATGCGTGTA
GACATTTAATGTCACTTATTAAGCCCCTGGCACGGCCCTGCGTAGCAGCGCCAGCCAGCC
TCACCCCTGCGCGCCCCCAGGGTTCCAGCTAAGGCGAGGAAGCATCAGCGTTGAGGCTCG
GGAGGGCGTTGAGATTGCTCAGCTGTTTCTCCGCCCGAGTTTGGCCAAGGCCTTGGTATT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               241-360, - strand, RNAz p=0.762834
               

               
               441-598, - strand, RNAz p=0.765186

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-360, - strand, RNAz p=0.762834
               

               
               441-598, - strand, RNAz p=0.765186

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-720, gnl|bosTau2|chr16 (34701990-34702692)
               

               
               3-720, gnl|Hg17|chr1 (6456263-6455510)
               

               
               3-720, gnl|Mm7|chr4 (151108943-151109634)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-720, gnl|bosTau2|chr16 (34701990-34702692)
               

               
               3-720, gnl|Hg17|chr1 (6456263-6455510)
               

               
               3-720, gnl|Mm7|chr4 (151108943-151109634)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	241-360, - strand, RNAz p=0.762834
	441-598, - strand, RNAz p=0.765186

	3-720, gnl\|bosTau2\|chr16 (34701990-34702692)
	3-720, gnl\|Hg17\|chr1 (6456263-6455510)
	3-720, gnl\|Mm7\|chr4 (151108943-151109634)