Ss1.1-Pig4-TMW8028H14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTACTATTTCTGATCATCCACAACCTATTGATCCACTATTAAAGAACTGCATAGGTGA TTTCCTAAAGACGTTGGAAGACCCAGATTTGAATGTAAGAAGAGTAGCCTTGGTCACATT CAACTCAGCAGCACATAATAAGCCATCGTTAATAAGAGATCTTCTAGATACTGTTCTTCC ACATCTTTATAATGAAACAAAAGTTAGAAAGGAGCTTATAAGAGAGGTAGAGATGGGTCC ATTTAAGCATACAGTTGATGACGGCCTGGATATTAGAAAGGCAGCATTTGAGTGTATGTA CACCCTTCTAGACAGTTGTTTGGATAGACTTGATATCTTTGAATTTCTAAATCATGTTGA AGATGGTTTGAAGGACCACTATGATATTAAGATGCTAACATTTTTAATGTTGGTGAGACT CTCTACCCTTTGTCCAAGTGCAGTACTGCAGAGGTTGGACCGACTTGTTGAGCCATTGCG TGCTACATGTACAACTAAGGTAAAAGCAAACTCAGTAAAGCAGGAGTTTGAAAAGCAAGA CGAACTAAAGCGATCTGCCATGAGAGCAGTAGCAGCACTGCTAACCATTCCAGAAGCAGA GAAGAGTCCACTGATGAGTGAATTCCAGTCACAGATCAGTTCTAACCCTGAGCTGGCAGC CATCTTTGAAAGTATCCAAAAAGATTCATCATCCACTAACTTGGAATCAATGGACACTAG TTAGATGTTTGTTCAACATGGGGACCATTACATTGACCATACGATGCACTGAATTGACAG GTTAATCATAAGACATGGAACGAGAAATGTCTAAAAGCTTCAAAATATTCCACTTTTTTC CTTCATGGAGACAGTTTGGCTTTTTTCCATTGTTGTTTTTGTAGCATTTATTTCAGAAAT ATGTATTTCCATAATCCAGAAGTTGTAAAACCACTAATGTTTTAGTGGTTAGGGCAACAT TTAAAATGGAAATCAAAAGTTAGGATTTATGGAATATGGAAATAGAGTCCAGTATCTATT TTACCCTGTAATGTTTAGGATTAAAATGTTAAAATTTTGTGACCATGAATTTCTTTCTTT TATAAATTTTCTCTTATTTAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTACTATTTCTGATCATCCACAACCTATTGATCCACTATTAAAGAACTGCATAGGTGA TTTCCTAAAGACGTTGGAAGACCCAGATTTGAATGTAAGAAGAGTAGCCTTGGTCACATT CAACTCAGCAGCACATAATAAGCCATCGTTAATAAGAGATCTTCTAGATACTGTTCTTCC ACATCTTTATAATGAAACAAAAGTTAGAAAGGAGCTTATAAGAGAGGTAGAGATGGGTCC ATTTAAGCATACAGTTGATGACGGCCTGGATATTAGAAAGGCAGCATTTGAGTGTATGTA CACCCTTCTAGACAGTTGTTTGGATAGACTTGATATCTTTGAATTTCTAAATCATGTTGA AGATGGTTTGAAGGACCACTATGATATTAAGATGCTAACATTTTTAATGTTGGTGAGACT CTCTACCCTTTGTCCAAGTGCAGTACTGCAGAGGTTGGACCGACTTGTTGAGCCATTGCG TGCTACATGTACAACTAAGGTAAAAGCAAACTCAGTAAAGCAGGAGTTTGAAAAGCAAGA CGAACTAAAGCGATCTGCCATGAGAGCAGTAGCAGCACTGCTAACCATTCCAGAAGCAGA GAAGAGTCCACTGATGAGTGAATTCCAGTCACAGATCAGTTCTAACCCTGAGCTGGCAGC CATCTTTGAAAGTATCCAAAAAGATTCATCATCCACTAACTTGGAATCAATGGACACTAG TTAGATGTTTGTTCAACATGGGGACCATTACATTGACCATACGATGCACTGAATTGACAG GTTAATCATAAGACATGGAACGAGAAATGTCTAAAAGCTTCAAAATATTCCACTTTTTTC CTTCATGGAGACAGTTTGGCTTTTTTCCATTGTTGTTTTTGTAGCATTTATTTCAGAAAT ATGTATTTCCATAATCCAGAAGTTGTAAAACCACTAATGTTTTAGTGGTTAGGGCAACAT TTAAAATGGAAATCAAAAGTTAGGATTTATGGAATATGGAAATAGAGTCCAGTATCTATT TTACCCTGTAATGTTTAGGATTAAAATGTTAAAATTTTGTGACCATGAATTTCTTTCTTT TATAAATTTTCTCTTATTTAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 880-1036, + strand, RNAz p=0.951569 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 880-1036, + strand, RNAz p=0.951569 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC050341, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 225-387, gnl|bosTau2|chr8 (40746732-40746894) | |
| 225-387, gnl|canFam2|chr20 (8767300-8767118) | |
| 225-387, gnl|danRer3|chr22 (42909825-42909656) | |
| 225-387, gnl|dasNov1|scaffold_25661 (7155-6982) | |
| 225-387, gnl|echTel1|scaffold_324115 (77805-77621) | |
| 225-387, gnl|fr1|chrUn (168917491-168917674) | |
| 225-387, gnl|galGal2|chr12 (19390393-19390574) | |
| 225-387, gnl|hg17|chr3 (12843936-12844119) | |
| 225-387, gnl|Hg17|chr3 (12843937-12844099) | |
| 225-387, gnl|loxAfr1|scaffold_50087 (8953-8780) | |
| 225-387, gnl|mm7|chr6 (115825530-115825710) | |
| 225-387, gnl|Mm7|chr6 (115825531-115825693) | |
| 225-387, gnl|monDom2|scaffold_5 (40397467-40397650) | |
| 225-387, gnl|oryCun1|scaffold_213711 (131046-130865) | |
| 225-387, gnl|panTro1|chr2 (13295934-13296117) | |
| 225-387, gnl|rheMac2|chr2 (48218875-48218693) | |
| 225-387, gnl|rn3|chr4 (152181325-152181505) | |
| 225-387, gnl|tetNig1|chrUn_random (19234877-19235047) | |
| 225-387, gnl|xenTro1|scaffold_172 (1546624-1546799) | |
| 498-687, gnl|bosTau2|chr8 (40749196-40749385) | |
| 498-687, gnl|Hg17|chr3 (12850252-12850441) | |
| 498-687, gnl|Mm7|chr6 (115829308-115829497) | |
| 880-1069, gnl|bosTau2|chr11 (21794543-21794358) | |
| 880-1069, gnl|Hg17|chr12 (65993040-65993229) | |
| 880-1069, gnl|Mm7|chr10 (118597068-118596879) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 225-387, gnl|bosTau2|chr8 (40746732-40746894) | |
| 225-387, gnl|canFam2|chr20 (8767300-8767118) | |
| 225-387, gnl|danRer3|chr22 (42909825-42909656) | |
| 225-387, gnl|dasNov1|scaffold_25661 (7155-6982) | |
| 225-387, gnl|echTel1|scaffold_324115 (77805-77621) | |
| 225-387, gnl|fr1|chrUn (168917491-168917674) | |
| 225-387, gnl|galGal2|chr12 (19390393-19390574) | |
| 225-387, gnl|hg17|chr3 (12843936-12844119) | |
| 225-387, gnl|Hg17|chr3 (12843937-12844099) | |
| 225-387, gnl|loxAfr1|scaffold_50087 (8953-8780) | |
| 225-387, gnl|mm7|chr6 (115825530-115825710) | |
| 225-387, gnl|Mm7|chr6 (115825531-115825693) | |
| 225-387, gnl|monDom2|scaffold_5 (40397467-40397650) | |
| 225-387, gnl|oryCun1|scaffold_213711 (131046-130865) | |
| 225-387, gnl|panTro1|chr2 (13295934-13296117) | |
| 225-387, gnl|rheMac2|chr2 (48218875-48218693) | |
| 225-387, gnl|rn3|chr4 (152181325-152181505) | |
| 225-387, gnl|tetNig1|chrUn_random (19234877-19235047) | |
| 225-387, gnl|xenTro1|scaffold_172 (1546624-1546799) | |
| 498-687, gnl|bosTau2|chr8 (40749196-40749385) | |
| 498-687, gnl|Hg17|chr3 (12850252-12850441) | |
| 498-687, gnl|Mm7|chr6 (115829308-115829497) | |
| 880-1069, gnl|bosTau2|chr11 (21794543-21794358) | |
| 880-1069, gnl|Hg17|chr12 (65993040-65993229) | |
| 880-1069, gnl|Mm7|chr10 (118597068-118596879) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| pro (0.512033) | |
| cte (0.29274) | |
| fce (0.271592) | |
| tra (0.246184) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| cte (0.29274) | |
| fce (0.271592) | |
| tra (0.246184) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| nbm (0.0993246) |