Non-Coding RNA Search

Ss1.1-Pig4-TMW8028H19.5

Sequence:


               
               CGTTATTCCTTCAACATGCAATGTACCAGGCCCTTTCCAGATTGAGGGTAACTTTACTGA
TGGATGTGTTCTTTTTTTCACACAACCCTTTACATCCTGTCTTGTCCTCCTGTTATTTGC
TTCTGCTGTACAAGATGTAGCACTTTTTCTCCTCTTTGAACATGGTCCAGTGACACGGTA
GCATCACTGCAGAAAGGAGCCAGACTTATTCTCAGAGAACTATGTTCACACTTTTCAGCA
AAAATAGCGATGGTTGTAACATATGTATTCCCTTCCTCGGATTTGAAGGCACAATCTACA
GTGTTTCTTTGCTTCTTTTCTGATCTGGGGCATGAAAAACTAAGATTGAGATTTGAACTG
TGAGTCTCCTGCATGGCAACATAACGTGTGTCACTGTCAGGCCAGTAGGCCGGCCCTGCA
AGGGTGGTTTTATTACTGTTGTATCTGTGTTGCATGATAAGCACCCATCATCTTCCTCCT
GTAGTCCTGCCTTGTATTCACCTTACTCAAAGATTGAAAAGTGAAACAAAACCCCCATGT
TTCCTAGCCCCCCCCGCCCCTGTTAGAAGAAAATTAACATTCTGACAGTTGTGATCGCCT
GAAGAACTTTTAGATTATTAGCGCTCGTTTTCTTCCCTTGTGGGTGTGTGTTTCTATGTG
CACCTGTGTAAGTTAGGCACATGCATCTTCTGTATGGATGACAGCGGGGTACCTACAGGA
GAGCAAATGTTAATTTCATGCTTCTAGTAAAAACATTTAAAGACAGTTCTTTATTGGGTG
GACTTATATTTGATGTGAATATTTGATCACTTAAAACTTTAAAAAATTCTAGGTAATTTG
CCAAGCATTTTGACTGCTCACCGATACCCTCTAAAAAATACTAGTTATTCTCCCTGTTTG
TGTAATAAAATCTTCGTATGTGTAGTTGCATTATTAATAGTTATTTCTTAGTCCACTGAA
TGTCCCCATGTGCCTCTTTTATGCCAAATTACTTGTTATATTTTATTCTGGGACCAAGTG
GTTTGCTGCAGCAAACCAAAATTTTTGACCCGCTGATGCCTCTCAGAAAAGTAAACACAC
TATGAAGATAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTATTCCTTCAACATGCAATGTACCAGGCCCTTTCCAGATTGAGGGTAACTTTACTGA
TGGATGTGTTCTTTTTTTCACACAACCCTTTACATCCTGTCTTGTCCTCCTGTTATTTGC
TTCTGCTGTACAAGATGTAGCACTTTTTCTCCTCTTTGAACATGGTCCAGTGACACGGTA
GCATCACTGCAGAAAGGAGCCAGACTTATTCTCAGAGAACTATGTTCACACTTTTCAGCA
AAAATAGCGATGGTTGTAACATATGTATTCCCTTCCTCGGATTTGAAGGCACAATCTACA
GTGTTTCTTTGCTTCTTTTCTGATCTGGGGCATGAAAAACTAAGATTGAGATTTGAACTG
TGAGTCTCCTGCATGGCAACATAACGTGTGTCACTGTCAGGCCAGTAGGCCGGCCCTGCA
AGGGTGGTTTTATTACTGTTGTATCTGTGTTGCATGATAAGCACCCATCATCTTCCTCCT
GTAGTCCTGCCTTGTATTCACCTTACTCAAAGATTGAAAAGTGAAACAAAACCCCCATGT
TTCCTAGCCCCCCCCGCCCCTGTTAGAAGAAAATTAACATTCTGACAGTTGTGATCGCCT
GAAGAACTTTTAGATTATTAGCGCTCGTTTTCTTCCCTTGTGGGTGTGTGTTTCTATGTG
CACCTGTGTAAGTTAGGCACATGCATCTTCTGTATGGATGACAGCGGGGTACCTACAGGA
GAGCAAATGTTAATTTCATGCTTCTAGTAAAAACATTTAAAGACAGTTCTTTATTGGGTG
GACTTATATTTGATGTGAATATTTGATCACTTAAAACTTTAAAAAATTCTAGGTAATTTG
CCAAGCATTTTGACTGCTCACCGATACCCTCTAAAAAATACTAGTTATTCTCCCTGTTTG
TGTAATAAAATCTTCGTATGTGTAGTTGCATTATTAATAGTTATTTCTTAGTCCACTGAA
TGTCCCCATGTGCCTCTTTTATGCCAAATTACTTGTTATATTTTATTCTGGGACCAAGTG
GTTTGCTGCAGCAAACCAAAATTTTTGACCCGCTGATGCCTCTCAGAAAAGTAAACACAC
TATGAAGATAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               637-756, - strand, RNAz p=0.939233

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               637-756, - strand, RNAz p=0.939233

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               731-839, + strand, RNAmicro p=0.999977

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               731-839, + strand, RNAmicro p=0.999977

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1091, gnl|bosTau2|chr1 (29069985-29071069)
               

               
               1-1091, gnl|Hg17|chr3 (109248201-109247116)
               

               
               1-1091, gnl|Mm7|chr16 (49672170-49673293)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1091, gnl|bosTau2|chr1 (29069985-29071069)
               

               
               1-1091, gnl|Hg17|chr3 (109248201-109247116)
               

               
               1-1091, gnl|Mm7|chr16 (49672170-49673293)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cbl (0.229595)
               

               
               spc (0.226732)
               

               
               mgm (0.180343)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               spc (0.226732)
               

               
               mgm (0.180343)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	1-1091, gnl\|bosTau2\|chr1 (29069985-29071069)
	1-1091, gnl\|Hg17\|chr3 (109248201-109247116)
	1-1091, gnl\|Mm7\|chr16 (49672170-49673293)

	cbl (0.229595)
	spc (0.226732)
	mgm (0.180343)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	pla (0.133672)
	ova (0.129132)
	thg (0.126791)
	med (0.116252)
	ecc (0.115035)