Non-Coding RNA Search

Ss1.1-Pig4-TMW8028I02.5

Sequence:


               
               TGCCATCTAAATTCTCTTCCATAACGATCACACTGACTGCTGGTTACTTGGGGGGGATGT
TTTAAACTGTGTTTGCTTATTTATTTATTTTAGACTGAAAAAATCTCAGGTAACTACAAA
ATGATAGTTTCTCCATTTAAGCCTTAATTAGAAATGACACGCAAACAAAGCATGAAAACA
CTTGAGAAGGGAGACAATTAAGCTACATCCGTATACCATTAAGCTGTTTTACTCCGTCAG
CCAATTGGCTTCCCCTAAATTTACCACTTACTGTCACTTCAACTTTTCCTACAACTGAAA
ACAGTATATGACTGAGTGCCACCTTCGTGCATTATTTGGCTCGGGTATGCTACTCAAAAG
AAGGGCAGATACTCTTTCTGAGTGAGCTCTTCCTGTGGAAAGTTGCCCCAGAGCCGCGGT
GTCTCCCTGCACAGGAGGCCGGATGGTTCAGGGAAGGCTGAGAGGTTTCCCTCAGGTGTC
CCACCCTGTGGCTTTACCTTTGCAGAGAGGAGCTGTCAGCTAGGGGCATGCCAGAGGCTC
CTGCCCTCTTAGCTGTGAGCCTTGCCAGGGGCAACAGACTAGCGGATGCCCACCTAGGCA
GCCTCATGCCTGATGCTGACCTGGGTATGTTTTGTGTACCTTAGGCTCCCATCTTTGGCT
TCCTTTGTAAGATGGCAGATTTCCCTACTGGGAGAGATGCTCATTTCAGAGCCCAGGCCC
GGGTATAAGAATGGGCTGGGTATAATAGCATCCTGGGTATAACATACTGGGTATAGTAGC
GCACTGGGTGTAATAGCGGGCTGGATGTAATAGCACACTGGGTATAATAGTGCGCTGGGT
GTAATAGCACACTGGGTATAATAGTGCGCTGGGTATAGTCGTGGGCTGGGTATAGTCGTG
GGCTGGGTGTAAAAGAGCGCACCGGGTATAAAAGTGCACTGGCTGTAATAATAGTGGGCT
GGGTATAATCGTGCGCTGAAGACATGAGAAACGGACTCAAGAATGCCCTGCTTGGACTTG
TTTTCCAATTGCCTTAAACAGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCATCTAAATTCTCTTCCATAACGATCACACTGACTGCTGGTTACTTGGGGGGGATGT
TTTAAACTGTGTTTGCTTATTTATTTATTTTAGACTGAAAAAATCTCAGGTAACTACAAA
ATGATAGTTTCTCCATTTAAGCCTTAATTAGAAATGACACGCAAACAAAGCATGAAAACA
CTTGAGAAGGGAGACAATTAAGCTACATCCGTATACCATTAAGCTGTTTTACTCCGTCAG
CCAATTGGCTTCCCCTAAATTTACCACTTACTGTCACTTCAACTTTTCCTACAACTGAAA
ACAGTATATGACTGAGTGCCACCTTCGTGCATTATTTGGCTCGGGTATGCTACTCAAAAG
AAGGGCAGATACTCTTTCTGAGTGAGCTCTTCCTGTGGAAAGTTGCCCCAGAGCCGCGGT
GTCTCCCTGCACAGGAGGCCGGATGGTTCAGGGAAGGCTGAGAGGTTTCCCTCAGGTGTC
CCACCCTGTGGCTTTACCTTTGCAGAGAGGAGCTGTCAGCTAGGGGCATGCCAGAGGCTC
CTGCCCTCTTAGCTGTGAGCCTTGCCAGGGGCAACAGACTAGCGGATGCCCACCTAGGCA
GCCTCATGCCTGATGCTGACCTGGGTATGTTTTGTGTACCTTAGGCTCCCATCTTTGGCT
TCCTTTGTAAGATGGCAGATTTCCCTACTGGGAGAGATGCTCATTTCAGAGCCCAGGCCC
GGGTATAAGAATGGGCTGGGTATAATAGCATCCTGGGTATAACATACTGGGTATAGTAGC
GCACTGGGTGTAATAGCGGGCTGGATGTAATAGCACACTGGGTATAATAGTGCGCTGGGT
GTAATAGCACACTGGGTATAATAGTGCGCTGGGTATAGTCGTGGGCTGGGTATAGTCGTG
GGCTGGGTGTAAAAGAGCGCACCGGGTATAAAAGTGCACTGGCTGTAATAATAGTGGGCT
GGGTATAATCGTGCGCTGAAGACATGAGAAACGGACTCAAGAATGCCCTGCTTGGACTTG
TTTTCCAATTGCCTTAAACAGGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               382-536, - strand, RNAz p=0.896808

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               382-536, - strand, RNAz p=0.896808

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-721, gnl|bosTau2|chr7 (33085154-33085872)
               

               
               1-721, gnl|Hg17|chr5 (134716304-134715623)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-721, gnl|bosTau2|chr7 (33085154-33085872)
               

               
               1-721, gnl|Hg17|chr5 (134716304-134715623)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cut (0.169924)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               eru (0.120048)

	1-721, gnl\|bosTau2\|chr7 (33085154-33085872)
	1-721, gnl\|Hg17\|chr5 (134716304-134715623)