Ss1.1-Pig4-TMW8028I05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTTCTATCGCCGAGGACTACAGGAAACGGGCCCCCTACATTGCTTACCTCACTCGCTG TCGACAAGGACTGCAGACCACACAGGCTCACCTGGAAAGGCTGCTGCAAAGGGTTTTGCG GGACAAAGAGGTGGCCAATCGGTATTTTACCACTGTCTGTGTGAGGCTGCTGCTTGAGAG CAAAGAAAAGAAGATCAGGGAATTCATTCAAGACTTTCAGAAACTCACAGCAGCTGATGA TAAAACTGCTCAGGTGGAAGACTTTCTGCAGTTCCTTTACGGTGCGATGGCCCAGGATGT CATCTGGCAGAACGCAAGTGAAGAGCAGCTCCAGGATGCTCAGCTGGCCATCGAGCGGAG TGTGATGAATCGGATCTTCAAGCTGGCTTTCTACCCCAATCAGGATGGGGACATACTCCG TGACCAGGTTCTTCATGAACATATTCAGAGACTGTCTAAAGTAGTAACTGCAAACCACAG AGCTCTTCAGATACCAGAGGTTTATCTTCGGGAGGCTCCGTGGCCATCTGCTCAGTCAGA AATCAGGACGATAAGTGCTTACAAGACCCCCCGGGACAAAGTGCAGTGCATCCTGAGAAT GTGCTCCACGATCATGAACCTGCTGAGCCTGGCCAACGAGGACTCCGTCCCAGGAGCGGA TGACTTTGTCCCCGTGTTGGTGTTTGTGTTGATAAAGGCAAATCCACCCTGTTTGCTGTC TACTGTTCAGTATATCAGCAGCTTTTATGCCAGCTGCCTGTCTGGAGAGGAGTCCTATTG GTGGATGCAGTTCACAGCAGCAGTGGAATTCATTAAAACCATCGATGACCGAAAGTGACC AAGACCAAGGCCCACCAAGGCAGCAGACTGTTCGGAGGGCAAACAGATCTCTTGGAAAAT GTACCAGCTGCTTTGAAGGCTGACACTTGTTTTTGTATGATACTGTACAGCATTCAGACA TTTTAAAACAGATCTTTACTAAACAGATTAATGAGCTAACAAGCAGGTTCTCTTTTCTTT GGGCTCTTTTCCTTTCTGAGTTGCATCTTTTATTTTCTTGTCCCCATGTGGAGAAGAGTA CTGCAAAAAGGGACCACATTTTTCAGGTATTTTGAAATACTAAAAACAAAACAAAATCTT CTAGAAAATTCTTAGATCTCCATTTATGGATACCCATTCTTTCTTTTCATTAAAAAAAAA AAAAAAAGCAGTACACCTCTTTGAAGATGCTGTCTAATCTTATATGCATCTGATGGAAGG AAAATACCAGTTGCACTGAGGATTGTGATAGTGGTGACATTAGTGGCATTATCTATAAAT ACACTCACCTAAATCGAAAAGCTAAGAAGGAAATGTAAATATAATATATATTTATATTTG ATGTAATATGGACATTCTTCAGATTCTAATAAACAAGGACTATTGCTGATAGTGGGTTGT AATGTACCCTCTTGTGGGATGGTTTCCTTGACAAAATTTAAGCTGCGCTTAAAAGCAAAA GGCAAACAAATATGCAGAAGTATTTATTAAAGTGTAATGCAGTTTATTGAAGTTTCTAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTTCTATCGCCGAGGACTACAGGAAACGGGCCCCCTACATTGCTTACCTCACTCGCTG TCGACAAGGACTGCAGACCACACAGGCTCACCTGGAAAGGCTGCTGCAAAGGGTTTTGCG GGACAAAGAGGTGGCCAATCGGTATTTTACCACTGTCTGTGTGAGGCTGCTGCTTGAGAG CAAAGAAAAGAAGATCAGGGAATTCATTCAAGACTTTCAGAAACTCACAGCAGCTGATGA TAAAACTGCTCAGGTGGAAGACTTTCTGCAGTTCCTTTACGGTGCGATGGCCCAGGATGT CATCTGGCAGAACGCAAGTGAAGAGCAGCTCCAGGATGCTCAGCTGGCCATCGAGCGGAG TGTGATGAATCGGATCTTCAAGCTGGCTTTCTACCCCAATCAGGATGGGGACATACTCCG TGACCAGGTTCTTCATGAACATATTCAGAGACTGTCTAAAGTAGTAACTGCAAACCACAG AGCTCTTCAGATACCAGAGGTTTATCTTCGGGAGGCTCCGTGGCCATCTGCTCAGTCAGA AATCAGGACGATAAGTGCTTACAAGACCCCCCGGGACAAAGTGCAGTGCATCCTGAGAAT GTGCTCCACGATCATGAACCTGCTGAGCCTGGCCAACGAGGACTCCGTCCCAGGAGCGGA TGACTTTGTCCCCGTGTTGGTGTTTGTGTTGATAAAGGCAAATCCACCCTGTTTGCTGTC TACTGTTCAGTATATCAGCAGCTTTTATGCCAGCTGCCTGTCTGGAGAGGAGTCCTATTG GTGGATGCAGTTCACAGCAGCAGTGGAATTCATTAAAACCATCGATGACCGAAAGTGACC AAGACCAAGGCCCACCAAGGCAGCAGACTGTTCGGAGGGCAAACAGATCTCTTGGAAAAT GTACCAGCTGCTTTGAAGGCTGACACTTGTTTTTGTATGATACTGTACAGCATTCAGACA TTTTAAAACAGATCTTTACTAAACAGATTAATGAGCTAACAAGCAGGTTCTCTTTTCTTT GGGCTCTTTTCCTTTCTGAGTTGCATCTTTTATTTTCTTGTCCCCATGTGGAGAAGAGTA CTGCAAAAAGGGACCACATTTTTCAGGTATTTTGAAATACTAAAAACAAAACAAAATCTT CTAGAAAATTCTTAGATCTCCATTTATGGATACCCATTCTTTCTTTTCATTAAAAAAAAA AAAAAAAGCAGTACACCTCTTTGAAGATGCTGTCTAATCTTATATGCATCTGATGGAAGG AAAATACCAGTTGCACTGAGGATTGTGATAGTGGTGACATTAGTGGCATTATCTATAAAT ACACTCACCTAAATCGAAAAGCTAAGAAGGAAATGTAAATATAATATATATTTATATTTG ATGTAATATGGACATTCTTCAGATTCTAATAAACAAGGACTATTGCTGATAGTGGGTTGT AATGTACCCTCTTGTGGGATGGTTTCCTTGACAAAATTTAAGCTGCGCTTAAAAGCAAAA GGCAAACAAATATGCAGAAGTATTTATTAAAGTGTAATGCAGTTTATTGAAGTTTCTAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 696-814, - strand, RNAz p=0.649289 | |
| 1170-1284, - strand, RNAz p=0.993789 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 696-814, - strand, RNAz p=0.649289 | |
| 1170-1284, - strand, RNAz p=0.993789 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 205-427, gnl|bosTau2|chr11 (76857324-76857546) | |
| 205-427, gnl|canFam2|chr9 (61104372-61104126) | |
| 205-427, gnl|danRer3|chr8 (32041468-32041696) | |
| 205-427, gnl|dasNov1|scaffold_5577 (27989-28235) | |
| 205-427, gnl|echTel1|scaffold_298205 (735-981) | |
| 205-427, gnl|fr1|chrUn (48374270-48374042) | |
| 205-427, gnl|galGal2|chr17 (829228-829008) | |
| 205-427, gnl|hg17|chr9 (125197451-125197697) | |
| 205-427, gnl|Hg17|chr9 (125197469-125197691) | |
| 205-427, gnl|loxAfr1|scaffold_6658 (42306-42554) | |
| 205-427, gnl|mm7|chr2 (34691733-34691488) | |
| 205-427, gnl|Mm7|chr2 (34691713-34691492) | |
| 205-427, gnl|monDom2|scaffold_38 (19519226-19519461) | |
| 205-427, gnl|oryCun1|scaffold_98326 (800-554) | |
| 205-427, gnl|panTro1|chr11 (109998025-109998271) | |
| 205-427, gnl|rheMac2|chr15 (101275267-101275021) | |
| 205-427, gnl|rn3|chr3 (13596301-13596056) | |
| 205-427, gnl|tetNig1|chrUn_random (34227423-34227202) | |
| 205-427, gnl|xenTro1|scaffold_1694 (95176-95412) | |
| 696-1560, gnl|bosTau2|chr11 (76862208-76863076) | |
| 696-1560, gnl|Hg17|chr9 (125204437-125205290) | |
| 696-1560, gnl|Mm7|chr2 (34685490-34684678) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 205-427, gnl|bosTau2|chr11 (76857324-76857546) | |
| 205-427, gnl|canFam2|chr9 (61104372-61104126) | |
| 205-427, gnl|danRer3|chr8 (32041468-32041696) | |
| 205-427, gnl|dasNov1|scaffold_5577 (27989-28235) | |
| 205-427, gnl|echTel1|scaffold_298205 (735-981) | |
| 205-427, gnl|fr1|chrUn (48374270-48374042) | |
| 205-427, gnl|galGal2|chr17 (829228-829008) | |
| 205-427, gnl|hg17|chr9 (125197451-125197697) | |
| 205-427, gnl|Hg17|chr9 (125197469-125197691) | |
| 205-427, gnl|loxAfr1|scaffold_6658 (42306-42554) | |
| 205-427, gnl|mm7|chr2 (34691733-34691488) | |
| 205-427, gnl|Mm7|chr2 (34691713-34691492) | |
| 205-427, gnl|monDom2|scaffold_38 (19519226-19519461) | |
| 205-427, gnl|oryCun1|scaffold_98326 (800-554) | |
| 205-427, gnl|panTro1|chr11 (109998025-109998271) | |
| 205-427, gnl|rheMac2|chr15 (101275267-101275021) | |
| 205-427, gnl|rn3|chr3 (13596301-13596056) | |
| 205-427, gnl|tetNig1|chrUn_random (34227423-34227202) | |
| 205-427, gnl|xenTro1|scaffold_1694 (95176-95412) | |
| 696-1560, gnl|bosTau2|chr11 (76862208-76863076) | |
| 696-1560, gnl|Hg17|chr9 (125204437-125205290) | |
| 696-1560, gnl|Mm7|chr2 (34685490-34684678) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| tra (0.369276) | |
| ski (0.29347) | |
| liv (0.292569) | |
| kid (0.259471) | |
| bla (0.248694) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fco (0.157208) | |
| lun (0.150489) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ret (0.128733) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ldo (0.0970026) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.369276) | |
| ski (0.29347) | |
| liv (0.292569) | |
| kid (0.259471) | |
| bla (0.248694) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fco (0.157208) | |
| lun (0.150489) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ret (0.128733) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ldo (0.0970026) |