Ss1.1-Pig4-TMW8028I07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGTGCTGCTCATCGACCCCGCTCCTCAGATCGCTGCCCTGGCCAAGAACTTCTTTAAT GAGCTTTCCCACAAGGGCAACGCCATCTATAACCTCCTTCCAGATATCATCAGCCGCCTG TCGGCTCCCGAGGGAGGGGTGGAGGAAGAGCCTTTCCACACCATCATGAAGCAGCTCCTC TCCTACATCACCAAGGACAAGCAGACCGAGAGCCTGGTGGAAAAGCTCTGTCAGCGGTTC CGCACAGCCCGAACTGAGAGGCAGTACCGGGACCTGGCCTACTGCGTGTCGCAGCTGCCC CTCACAGAGCGGGGCCTCCGTAAGATGCTGGACAACTTTGATTGCTTTGGAGATAAACTA TCAGACGAGTCCATCTTTAGTGCCTTTTTGTCAGTTGTAGGCAAGTTGCGACGTGGAGCC AAGCCAGAGGGCAAGGCTGTAATAGATGAATTTGAGCAGAAGCTTCGGGCCTGTCACACC AGAGGTTTGGATGCAATAGAGGAATTTGAGATGGGCCAAGGAGGCAGCCAGAGAGCCCCA TCAGCCAAGAAACTACCTGCTGTCTCTAGACACCGGCATCTGGTCTCTGCAGCTTCAGAC GATGACTTTGTCACACCTGAGCCCCGCCGTACTACCCGTCGGCATCCAAACACCCAGCAG CAAGTTTCGAAAAAGAAGCTCAGAATTGTCTTTTCGAGCGACGAGTCCAGCGAGGAGGAA CTGTCAGCAGAGATGATGGAAGATGAGACACCCAAGAAAACCACCCCCATCCGCCGAGCA TCTGCTCACAGACAAAGATCCTAGAGGTGTCCTACCTGTTCCCATCCCAGCCAGCCCTGC AGGTGTCTTGTGGAGTGACCCTGAATTCCATTCCCCTTGTAAAATACGTGTTTACCTGTC TCCTTGGTTTTTTTTAATGTGTAAATGGTCTTTATTATGTTAGGCTTTGCTAAACTAAGC CTAACTGAACCAAGTCAAGTTGTTTTCCAGAATGTGTGTTTGCCAGTTTCTTTGTTTTCT AATGAATAAATATTTTTATATACTTTTAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGTGCTGCTCATCGACCCCGCTCCTCAGATCGCTGCCCTGGCCAAGAACTTCTTTAAT GAGCTTTCCCACAAGGGCAACGCCATCTATAACCTCCTTCCAGATATCATCAGCCGCCTG TCGGCTCCCGAGGGAGGGGTGGAGGAAGAGCCTTTCCACACCATCATGAAGCAGCTCCTC TCCTACATCACCAAGGACAAGCAGACCGAGAGCCTGGTGGAAAAGCTCTGTCAGCGGTTC CGCACAGCCCGAACTGAGAGGCAGTACCGGGACCTGGCCTACTGCGTGTCGCAGCTGCCC CTCACAGAGCGGGGCCTCCGTAAGATGCTGGACAACTTTGATTGCTTTGGAGATAAACTA TCAGACGAGTCCATCTTTAGTGCCTTTTTGTCAGTTGTAGGCAAGTTGCGACGTGGAGCC AAGCCAGAGGGCAAGGCTGTAATAGATGAATTTGAGCAGAAGCTTCGGGCCTGTCACACC AGAGGTTTGGATGCAATAGAGGAATTTGAGATGGGCCAAGGAGGCAGCCAGAGAGCCCCA TCAGCCAAGAAACTACCTGCTGTCTCTAGACACCGGCATCTGGTCTCTGCAGCTTCAGAC GATGACTTTGTCACACCTGAGCCCCGCCGTACTACCCGTCGGCATCCAAACACCCAGCAG CAAGTTTCGAAAAAGAAGCTCAGAATTGTCTTTTCGAGCGACGAGTCCAGCGAGGAGGAA CTGTCAGCAGAGATGATGGAAGATGAGACACCCAAGAAAACCACCCCCATCCGCCGAGCA TCTGCTCACAGACAAAGATCCTAGAGGTGTCCTACCTGTTCCCATCCCAGCCAGCCCTGC AGGTGTCTTGTGGAGTGACCCTGAATTCCATTCCCCTTGTAAAATACGTGTTTACCTGTC TCCTTGGTTTTTTTTAATGTGTAAATGGTCTTTATTATGTTAGGCTTTGCTAAACTAAGC CTAACTGAACCAAGTCAAGTTGTTTTCCAGAATGTGTGTTTGCCAGTTTCTTTGTTTTCT AATGAATAAATATTTTTATATACTTTTAAAAAAAAAAAAAAAAAAAAA |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 253-436, gnl|bosTau2|chr5 (60640785-60640602) | |
| 253-436, gnl|canFam2|chr27 (41505127-41504922) | |
| 253-436, gnl|canFam2|chr27 (41504929-41505109) | |
| 253-436, gnl|danRer3|chr2 (40315016-40315213) | |
| 253-436, gnl|danRer3|chr2 (40287905-40287722) | |
| 253-436, gnl|dasNov1|scaffold_4087 (101534-101739) | |
| 253-436, gnl|dasNov1|scaffold_4087 (101735-101551) | |
| 253-436, gnl|echTel1|scaffold_45045 (3514-3312) | |
| 253-436, gnl|echTel1|scaffold_45045 (3319-3500) | |
| 253-436, gnl|fr1|chrUn (74837397-74837214) | |
| 253-436, gnl|galGal2|chr1 (71005659-71005853) | |
| 253-436, gnl|hg17|chr12 (6509186-6509391) | |
| 253-436, gnl|Hg17|chr12 (6509203-6509386) | |
| 253-436, gnl|hg17|chr7 (34563471-34563655) | |
| 253-436, gnl|loxAfr1|scaffold_112921 (1686-1481) | |
| 253-436, gnl|loxAfr1|scaffold_112921 (1488-1669) | |
| 253-436, gnl|mm7|chr6 (125195921-125195728) | |
| 253-436, gnl|mm7|chr6 (125195732-125195916) | |
| 253-436, gnl|Mm7|chr6 (125195914-125195731) | |
| 253-436, gnl|monDom2|scaffold_31 (14929650-14929855) | |
| 253-436, gnl|monDom2|scaffold_31 (14929851-14929668) | |
| 253-436, gnl|oryCun1|scaffold_199228 (71633-71838) | |
| 253-436, gnl|oryCun1|scaffold_199228 (71834-71650) | |
| 253-436, gnl|panTro1|chr10 (7043941-7044146) | |
| 253-436, gnl|panTro1|chr6 (35725203-35725387) | |
| 253-436, gnl|rheMac2|chr11 (6681050-6681255) | |
| 253-436, gnl|rheMac2|chr3 (91407998-91407813) | |
| 253-436, gnl|rn3|chr4 (161535636-161535441) | |
| 253-436, gnl|rn3|chr4 (161535445-161535629) | |
| 253-436, gnl|tetNig1|chr8 (8904038-8904237) | |
| 253-436, gnl|tetNig1|chr8 (8904234-8904050) | |
| 253-436, gnl|xenTro1|scaffold_991 (72358-72167) | |
| 253-436, gnl|xenTro1|scaffold_991 (72171-72355) | |
| 718-1048, gnl|bosTau2|chr5 (60639371-60639030) | |
| 718-1048, gnl|canFam2|chr27 (41503086-41503383) | |
| 718-1048, gnl|dasNov1|scaffold_4087 (103174-102866) | |
| 718-1048, gnl|echTel1|scaffold_45045 (2205-2517) | |
| 718-1048, gnl|Hg17|chr12 (6510753-6511382) | |
| 718-1048, gnl|hg17|chr7 (34562845-34563186) | |
| 718-1048, gnl|loxAfr1|scaffold_112921 (320-638) | |
| 718-1048, gnl|mm7|chr6 (125193929-125194235) | |
| 718-1048, gnl|Mm7|chr6 (125194237-125193925) | |
| 718-1048, gnl|monDom2|scaffold_31 (14932334-14931986) | |
| 718-1048, gnl|oryCun1|scaffold_199228 (73282-72967) | |
| 718-1048, gnl|panTro1|chr6 (35724578-35724918) | |
| 718-1048, gnl|rheMac2|chr3 (91408625-91408282) | |
| 718-1048, gnl|rn3|chr4 (161533615-161533916) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 253-436, gnl|bosTau2|chr5 (60640785-60640602) | |
| 253-436, gnl|canFam2|chr27 (41505127-41504922) | |
| 253-436, gnl|canFam2|chr27 (41504929-41505109) | |
| 253-436, gnl|danRer3|chr2 (40315016-40315213) | |
| 253-436, gnl|danRer3|chr2 (40287905-40287722) | |
| 253-436, gnl|dasNov1|scaffold_4087 (101534-101739) | |
| 253-436, gnl|dasNov1|scaffold_4087 (101735-101551) | |
| 253-436, gnl|echTel1|scaffold_45045 (3514-3312) | |
| 253-436, gnl|echTel1|scaffold_45045 (3319-3500) | |
| 253-436, gnl|fr1|chrUn (74837397-74837214) | |
| 253-436, gnl|galGal2|chr1 (71005659-71005853) | |
| 253-436, gnl|hg17|chr12 (6509186-6509391) | |
| 253-436, gnl|Hg17|chr12 (6509203-6509386) | |
| 253-436, gnl|hg17|chr7 (34563471-34563655) | |
| 253-436, gnl|loxAfr1|scaffold_112921 (1686-1481) | |
| 253-436, gnl|loxAfr1|scaffold_112921 (1488-1669) | |
| 253-436, gnl|mm7|chr6 (125195921-125195728) | |
| 253-436, gnl|mm7|chr6 (125195732-125195916) | |
| 253-436, gnl|Mm7|chr6 (125195914-125195731) | |
| 253-436, gnl|monDom2|scaffold_31 (14929650-14929855) | |
| 253-436, gnl|monDom2|scaffold_31 (14929851-14929668) | |
| 253-436, gnl|oryCun1|scaffold_199228 (71633-71838) | |
| 253-436, gnl|oryCun1|scaffold_199228 (71834-71650) | |
| 253-436, gnl|panTro1|chr10 (7043941-7044146) | |
| 253-436, gnl|panTro1|chr6 (35725203-35725387) | |
| 253-436, gnl|rheMac2|chr11 (6681050-6681255) | |
| 253-436, gnl|rheMac2|chr3 (91407998-91407813) | |
| 253-436, gnl|rn3|chr4 (161535636-161535441) | |
| 253-436, gnl|rn3|chr4 (161535445-161535629) | |
| 253-436, gnl|tetNig1|chr8 (8904038-8904237) | |
| 253-436, gnl|tetNig1|chr8 (8904234-8904050) | |
| 253-436, gnl|xenTro1|scaffold_991 (72358-72167) | |
| 253-436, gnl|xenTro1|scaffold_991 (72171-72355) | |
| 718-1048, gnl|bosTau2|chr5 (60639371-60639030) | |
| 718-1048, gnl|canFam2|chr27 (41503086-41503383) | |
| 718-1048, gnl|dasNov1|scaffold_4087 (103174-102866) | |
| 718-1048, gnl|echTel1|scaffold_45045 (2205-2517) | |
| 718-1048, gnl|Hg17|chr12 (6510753-6511382) | |
| 718-1048, gnl|hg17|chr7 (34562845-34563186) | |
| 718-1048, gnl|loxAfr1|scaffold_112921 (320-638) | |
| 718-1048, gnl|mm7|chr6 (125193929-125194235) | |
| 718-1048, gnl|Mm7|chr6 (125194237-125193925) | |
| 718-1048, gnl|monDom2|scaffold_31 (14932334-14931986) | |
| 718-1048, gnl|oryCun1|scaffold_199228 (73282-72967) | |
| 718-1048, gnl|panTro1|chr6 (35724578-35724918) | |
| 718-1048, gnl|rheMac2|chr3 (91408625-91408282) | |
| 718-1048, gnl|rn3|chr4 (161533615-161533916) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cmu (0.372787) | |
| eye (0.341006) | |
| fce (0.271592) | |
| sin (0.174948) | |
| rec (0.17307) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nca (0.136874) | |
| che (0.136314) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.372787) | |
| eye (0.341006) | |
| fce (0.271592) | |
| sin (0.174948) | |
| rec (0.17307) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nca (0.136874) | |
| che (0.136314) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) |