Non-Coding RNA Search

Ss1.1-Pig4-TMW8028I11.3

Sequence:


               
               GACTGCACTGCCCCCACCCTCCACCGCCCTGCCCCTGCCAGACACCGTAGGACAATGTGC
ACGGAGCGGGGACCCGTCTCCAGCGGACACTGACCTTTTCCATCTCCTGCAGTAAAAGGG
TTCTTGGGGGTGGGAGAAGGATCTCTGCTTGGCAGAAAGCCCTTCCGGGGTGCTCCCAGC
CTGCAGTGGATAGAACCGACCACGCCCGCCTCCTCCGGACACCACGTGGCTCCAGAATCT
CCACCTCCTGGCAGGTTTTAAGGGAAGACCTTCCCCTTTGGTCCCTCACCCCTTTCCAGA
CCCAGAACCATCAGTATATATCACATCCTAATTTCTATTGATGTATTTCATTCGTTTCAT
ACAGTTTTACTAATCCTCGATCTAAACAACAGATTTGTTCCAAAGGAGACCATTCTATTT
TTAAAGTACTTAGTGAATAGATGTATGAGCTTTGCATGGTCGAACTCAGCACATGACCCT
TTCTTGTACATTCAGAACCTGAACATACATGTAAAAAACAGCATCCATTTTGGACAGATG
TGAAACTAGTTTATTTGTAATAAATAAGGGTATAACTGATCCATATATGCATATATCTAT
ATGCTGTATGACGTGGGCATAGTGCACTACAGTCTGTTAGAGGCGCCTTCGTCCCCTGTA
AGGAACCAGATGTTCATTTATGTAGCATTCGTCACAGACTCTGTAAAACACGCGACGTTC
TGTACCTCTCACACTGTGACAGTGTCTCACCAATAAAGACTGGTACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTGCACTGCCCCCACCCTCCACCGCCCTGCCCCTGCCAGACACCGTAGGACAATGTGC
ACGGAGCGGGGACCCGTCTCCAGCGGACACTGACCTTTTCCATCTCCTGCAGTAAAAGGG
TTCTTGGGGGTGGGAGAAGGATCTCTGCTTGGCAGAAAGCCCTTCCGGGGTGCTCCCAGC
CTGCAGTGGATAGAACCGACCACGCCCGCCTCCTCCGGACACCACGTGGCTCCAGAATCT
CCACCTCCTGGCAGGTTTTAAGGGAAGACCTTCCCCTTTGGTCCCTCACCCCTTTCCAGA
CCCAGAACCATCAGTATATATCACATCCTAATTTCTATTGATGTATTTCATTCGTTTCAT
ACAGTTTTACTAATCCTCGATCTAAACAACAGATTTGTTCCAAAGGAGACCATTCTATTT
TTAAAGTACTTAGTGAATAGATGTATGAGCTTTGCATGGTCGAACTCAGCACATGACCCT
TTCTTGTACATTCAGAACCTGAACATACATGTAAAAAACAGCATCCATTTTGGACAGATG
TGAAACTAGTTTATTTGTAATAAATAAGGGTATAACTGATCCATATATGCATATATCTAT
ATGCTGTATGACGTGGGCATAGTGCACTACAGTCTGTTAGAGGCGCCTTCGTCCCCTGTA
AGGAACCAGATGTTCATTTATGTAGCATTCGTCACAGACTCTGTAAAACACGCGACGTTC
TGTACCTCTCACACTGTGACAGTGTCTCACCAATAAAGACTGGTACCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-711, gnl|bosTau2|chr2 (38998186-38998865)
               

               
               2-711, gnl|Hg17|chr2 (135047868-135047155)
               

               
               2-711, gnl|Mm7|chr1 (127370481-127369828)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-711, gnl|bosTau2|chr2 (38998186-38998865)
               

               
               2-711, gnl|Hg17|chr2 (135047868-135047155)
               

               
               2-711, gnl|Mm7|chr1 (127370481-127369828)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ese (0.126502)

	2-711, gnl\|bosTau2\|chr2 (38998186-38998865)
	2-711, gnl\|Hg17\|chr2 (135047868-135047155)
	2-711, gnl\|Mm7\|chr1 (127370481-127369828)