Non-Coding RNA Search

Ss1.1-Pig4-TMW8028I14.3

Sequence:


               
               AGGCCAGAACTAGCTTTTCTGTCTCTTGGCCAGTGCCGAGTGGATTGACTAGTTTGGGAG
AGGAGGAGGGACTGGGTTCAGCTGTGGTGCTTTGTTGTAAAAGGCAGCTTGGCCTTTGCT
ACTGATGAGAAAGATGGGAGCCTGGGTCTCAAGCCCACCTTTGGTGTACCTTTGCCACAC
GGTACTGGTACTGTATGCGTGCCAGCTAAAAGGAGGGTGAGGGATTCTTTCCAGCCTGAG
AATGAGTGTGTGTGAGTGAGGCGGTATCCACATTCTCAACTTCAAGTCATTGCAGTTTCT
TTTTCCCAGAAAAAAAGGGGTTAGACGTTGCATTTCATAAAACTAACTGAAGTTCTGTCT
ACTGATGCAGCACAAGAGATGTAAAGGAAAAAAAAGGAAAGACGCTCTTTAGGTTTTGTT
TTGGGTTTTTTCTTTTCTTTTCTTCCCCCCCCCACTTCTAGGGAAAACACTGACGAATGG
TCAGAGCTCCCATCCTGATCTTTTTATCAAGGCGCCTTTCCTAATAATATGGTTCAACTG
TGAATGTAGAAGTGGGGGGAGGGGGGAGAAAAAAAACTCTGGAGTTAGAGGATATAGAAA
AACATAAAAATACAATTGTTACAAATAAAGAATGCAAACTTCAAAAAAAACAAAAAACAA
AAGAAAGCCACAACCCAAACAAACCAAAATTTAAATGCTCAGAATTGGCAGCACAAAAGA
AAAGTTCTCTCTTGACATGTATGGTGGCAGTCTGAACGCCCCCAGAAAATTGTGCCAAAG
AGTTTAGGAAACATACAATAAAAGTAAACAGCAAACTTCAGGTAACTATTTTGGATTGCA
AACAAGGATAAATTTAATGTTTAAACAATCTGATAAAATAACCATTTGGAAACTGCTTGG
CCTTCTGTTCTCTTTTATTTGATTACTATAAATGCGGTATTGGTCTCTTGCTGCACTTCA
AAACCAACTGATCAAAACAAAATATATATGTGTGTGTATGTATACGTATATATACACACA
CGTATATGGTAGAACTCTTGTGATGAAAATGGCACTTGAAAAAGGTTATATTTTTCCACT
GAAGTTGAAGATTAATAAAATGGTGTCAAAGCATTCCCCTGGTCACACGCTTTAATATTT
TTTTAAAAGTGTGATGTACTATGATAACAATAAATCAGACTTATTTTCCCTTTTACAAGG
GAACAGGGCGCCCTGAATTTTGGTTTTAGAATCTTTCAGCAATAAGGAGGGATGTTGGTG
AGCTTTGATCCCCTTTTGGTTTTGCAGTTATTAGGAGTTTTTGCTGGCATTTTGAATATG
CTGCTTTCAAAAGCACCAAGGAAGATTTTAAATTGCTTCCTGGTATTTGGAGGATTAAAA
AAAAACAAGACCTTAATATTTCCACTTTCATTTACATTCTAGCAAAAAAAAAAAAAAATG
GGCTTAGGTTTTTCTCTTTGCCAACTCCCTGTTCAAGCCTTCCATTCATAAGTGGGATTG
GCTCAGTTTTGCCCATCCATACGGCAGCATCTCTAGTAGCTCTTGTACAGGGTATCAGAT
ATTGTGCCTTTTGGTGCCAGGTTCAAAGTCAAGTGCCGATCTATGAACCAGTGTACAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCCAGAACTAGCTTTTCTGTCTCTTGGCCAGTGCCGAGTGGATTGACTAGTTTGGGAG
AGGAGGAGGGACTGGGTTCAGCTGTGGTGCTTTGTTGTAAAAGGCAGCTTGGCCTTTGCT
ACTGATGAGAAAGATGGGAGCCTGGGTCTCAAGCCCACCTTTGGTGTACCTTTGCCACAC
GGTACTGGTACTGTATGCGTGCCAGCTAAAAGGAGGGTGAGGGATTCTTTCCAGCCTGAG
AATGAGTGTGTGTGAGTGAGGCGGTATCCACATTCTCAACTTCAAGTCATTGCAGTTTCT
TTTTCCCAGAAAAAAAGGGGTTAGACGTTGCATTTCATAAAACTAACTGAAGTTCTGTCT
ACTGATGCAGCACAAGAGATGTAAAGGAAAAAAAAGGAAAGACGCTCTTTAGGTTTTGTT
TTGGGTTTTTTCTTTTCTTTTCTTCCCCCCCCCACTTCTAGGGAAAACACTGACGAATGG
TCAGAGCTCCCATCCTGATCTTTTTATCAAGGCGCCTTTCCTAATAATATGGTTCAACTG
TGAATGTAGAAGTGGGGGGAGGGGGGAGAAAAAAAACTCTGGAGTTAGAGGATATAGAAA
AACATAAAAATACAATTGTTACAAATAAAGAATGCAAACTTCAAAAAAAACAAAAAACAA
AAGAAAGCCACAACCCAAACAAACCAAAATTTAAATGCTCAGAATTGGCAGCACAAAAGA
AAAGTTCTCTCTTGACATGTATGGTGGCAGTCTGAACGCCCCCAGAAAATTGTGCCAAAG
AGTTTAGGAAACATACAATAAAAGTAAACAGCAAACTTCAGGTAACTATTTTGGATTGCA
AACAAGGATAAATTTAATGTTTAAACAATCTGATAAAATAACCATTTGGAAACTGCTTGG
CCTTCTGTTCTCTTTTATTTGATTACTATAAATGCGGTATTGGTCTCTTGCTGCACTTCA
AAACCAACTGATCAAAACAAAATATATATGTGTGTGTATGTATACGTATATATACACACA
CGTATATGGTAGAACTCTTGTGATGAAAATGGCACTTGAAAAAGGTTATATTTTTCCACT
GAAGTTGAAGATTAATAAAATGGTGTCAAAGCATTCCCCTGGTCACACGCTTTAATATTT
TTTTAAAAGTGTGATGTACTATGATAACAATAAATCAGACTTATTTTCCCTTTTACAAGG
GAACAGGGCGCCCTGAATTTTGGTTTTAGAATCTTTCAGCAATAAGGAGGGATGTTGGTG
AGCTTTGATCCCCTTTTGGTTTTGCAGTTATTAGGAGTTTTTGCTGGCATTTTGAATATG
CTGCTTTCAAAAGCACCAAGGAAGATTTTAAATTGCTTCCTGGTATTTGGAGGATTAAAA
AAAAACAAGACCTTAATATTTCCACTTTCATTTACATTCTAGCAAAAAAAAAAAAAAATG
GGCTTAGGTTTTTCTCTTTGCCAACTCCCTGTTCAAGCCTTCCATTCATAAGTGGGATTG
GCTCAGTTTTGCCCATCCATACGGCAGCATCTCTAGTAGCTCTTGTACAGGGTATCAGAT
ATTGTGCCTTTTGGTGCCAGGTTCAAAGTCAAGTGCCGATCTATGAACCAGTGTACAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13278618|gb|AAH04096.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13278618|gb|AAH04096.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-120, + strand, RNAz p=0.650748
               

               
               1112-1388, - strand, RNAz p=0.995791
               

               
               1429-1547, - strand, RNAz p=0.512305

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, + strand, RNAz p=0.650748
               

               
               1112-1388, - strand, RNAz p=0.995791
               

               
               1429-1547, - strand, RNAz p=0.512305

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               1-1620, gnl|bosTau2|chr19 (32581056-32579450)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1620, gnl|bosTau2|chr19 (32581056-32579450)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               nms (0.641574)
               

               
               eye (0.511509)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.641574)
               

               
               eye (0.511509)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	1-120, + strand, RNAz p=0.650748
	1112-1388, - strand, RNAz p=0.995791
	1429-1547, - strand, RNAz p=0.512305

	nms (0.641574)
	eye (0.511509)
	amn (0.417711)
	elu (0.385356)
	vin (0.332557)
	fce (0.271592)
	ova (0.258264)
	sug (0.254582)
	thg (0.253582)
	mgp (0.230681)
	nep (0.183925)
	nje (0.16592)
	liv (0.146284)
	csk (0.140746)
	che (0.136314)
	pla (0.133672)
	lyg (0.133103)
	ute (0.132784)
	ret (0.128733)
	pgl (0.118483)
	cty (0.10408)
	nbm (0.0993246)