Ss1.1-Pig4-TMW8028I18.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCCATGATAGATAGCTTTGTTCGGCTAATGAATGAGTTTACCAATATGCCAGTACCTC CAAAACCCCGGCAAGCGCTCGGGGATAAGGTCATGCGGGACATCCGCCCCGGAGCTGCCT TCGAACCCACGTACATTTACAGACTCCTGACCGTCATCAAGTCGAGCCTGTCTGAGAAGG GTCGGCAGGAGGACGCGGAGGAGTACCTGGGCTTCATCCTGAATGGCCTCCACGAGGAGA TGCTGAGCCTCAAGAAGCTTCTCTCCCCGGACAATGAAAAACTTACTGTTTCCAACGGAC CCCAAAGCCACCTGGTGGACGAAGACGAGCAGGAAGAACCAGGCGAAGGAAGTGAGGACG AATGGGAGCAAGTGGGCCCCAGAAATAAGACCTCGGTCACTCGCCAGGCGGATTTTGTTC AGACCCCAATCACTGGCATTTTTGGTGGACACATCAGGTCCGTAGTGTACCAGCAGAGCT CCAAGGAGTCTGCCACCCTGCAGCCCTTCTTCACGCTGCAGCTGGACATCCAGTCCGACA AGATCCGCACCGTCCAGGACGCGTTGGAGAGCCTGGTGGCAAGAGAGTCTGTCCAGGGCT ACACCACCAAAACCAAGCAGGAGGTTGAGATCAGTCGAAGAGTGACTCTGGAAAAACTGC CTCCTGTCCTCGTGCTGCACCTAAAACGGTTTGTCTACGAGAAGACTGGTGGATGCCAGA AGCTTATCAAAAATATCGAGTATCCTGTGGACTTGGAAATTAGTAAAGAACTGCTTTCTC CAGGGGTTAAAAATAAGAATTTTAAATGCCACAGAACCTATAGGCTATTTGCAGTGGTCT ACCACCACGGCAGCAGCGCCACGGGCGGCCACTACACCACGGACGTCTTCCAGATCGGCC TCAACGGCTGGCTGCGCATCGACGACCAGACGGTCAAGGTGATCAACCAGTACCAGGTGG TGAAGCCCGCCGCGGAGCGCACAGCCTACCTCCTCTATTACCGCCGCGTGGACCTGCTGT AGCCGCCGCCGCCGCCACCGCGCCCGCCGCCGCTTGTAGAGCCCACCTCGCCCCGCCCCC CTCCTCTCTGTAGTGGCTCTTTAGAGAGAAACTCGTTCTCCCTCCTGCAGAAATGGGCTA GGATGAAAGGAGACGCCTTGGGGTTTGCGCACAACATGGCTTACGCTGGCTCCTAACTTC CAGATCCAGAGCATTGGGTTTAAGAGAATACACCAAAAACCACATTTCTGAAATAATGCC GATTCCTGAGTCAGAAGGGGAACTTGCATTTGATTCCCAGTCTCATTGCGTAGTAGAATA AATCCTGCACCAGCAACACTTGTAAATTTGTGAAAATGAATTTTATCTTTCCTTAAAAAA GAAATTTTTTAATCCATCACACTCTCCTCCCCCCACCCGTTAGTTTTTGATAAATGATCA AAATGAGCCAGTTATCAGAGAAGAGACAGTTCGTACTTCAAAAGAAAAACACACACACAA AATCAGTTGCTGGTTCCTAACAGGAAAAGTACATTTTAATAATTGTGTGAGAAGCTGCTT AAACGTCTGCGTTGCGGATCAGATCCTTGGAGTTAACGTGTTAGTCGCATAGATGGGTGA TTGTAACTTTATTGCCATTAAAAGATTTCAGGTTGCATTCCTGCTTCTGTGTACACCTAA TGAAAAGCGGGCAAAATAATGAAGGTCGGTGTTTCCTTAAGTCTGCTGTTGACTTCTGCT GTCTGCTCTCCCACAATGCTGCGTCTCTAATTGTACACAGTTAGTGATGCCTAGGAGTAT AAAGTTGTCGCCCATCAATAAAAATCACAGCGTTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCCATGATAGATAGCTTTGTTCGGCTAATGAATGAGTTTACCAATATGCCAGTACCTC CAAAACCCCGGCAAGCGCTCGGGGATAAGGTCATGCGGGACATCCGCCCCGGAGCTGCCT TCGAACCCACGTACATTTACAGACTCCTGACCGTCATCAAGTCGAGCCTGTCTGAGAAGG GTCGGCAGGAGGACGCGGAGGAGTACCTGGGCTTCATCCTGAATGGCCTCCACGAGGAGA TGCTGAGCCTCAAGAAGCTTCTCTCCCCGGACAATGAAAAACTTACTGTTTCCAACGGAC CCCAAAGCCACCTGGTGGACGAAGACGAGCAGGAAGAACCAGGCGAAGGAAGTGAGGACG AATGGGAGCAAGTGGGCCCCAGAAATAAGACCTCGGTCACTCGCCAGGCGGATTTTGTTC AGACCCCAATCACTGGCATTTTTGGTGGACACATCAGGTCCGTAGTGTACCAGCAGAGCT CCAAGGAGTCTGCCACCCTGCAGCCCTTCTTCACGCTGCAGCTGGACATCCAGTCCGACA AGATCCGCACCGTCCAGGACGCGTTGGAGAGCCTGGTGGCAAGAGAGTCTGTCCAGGGCT ACACCACCAAAACCAAGCAGGAGGTTGAGATCAGTCGAAGAGTGACTCTGGAAAAACTGC CTCCTGTCCTCGTGCTGCACCTAAAACGGTTTGTCTACGAGAAGACTGGTGGATGCCAGA AGCTTATCAAAAATATCGAGTATCCTGTGGACTTGGAAATTAGTAAAGAACTGCTTTCTC CAGGGGTTAAAAATAAGAATTTTAAATGCCACAGAACCTATAGGCTATTTGCAGTGGTCT ACCACCACGGCAGCAGCGCCACGGGCGGCCACTACACCACGGACGTCTTCCAGATCGGCC TCAACGGCTGGCTGCGCATCGACGACCAGACGGTCAAGGTGATCAACCAGTACCAGGTGG TGAAGCCCGCCGCGGAGCGCACAGCCTACCTCCTCTATTACCGCCGCGTGGACCTGCTGT AGCCGCCGCCGCCGCCACCGCGCCCGCCGCCGCTTGTAGAGCCCACCTCGCCCCGCCCCC CTCCTCTCTGTAGTGGCTCTTTAGAGAGAAACTCGTTCTCCCTCCTGCAGAAATGGGCTA GGATGAAAGGAGACGCCTTGGGGTTTGCGCACAACATGGCTTACGCTGGCTCCTAACTTC CAGATCCAGAGCATTGGGTTTAAGAGAATACACCAAAAACCACATTTCTGAAATAATGCC GATTCCTGAGTCAGAAGGGGAACTTGCATTTGATTCCCAGTCTCATTGCGTAGTAGAATA AATCCTGCACCAGCAACACTTGTAAATTTGTGAAAATGAATTTTATCTTTCCTTAAAAAA GAAATTTTTTAATCCATCACACTCTCCTCCCCCCACCCGTTAGTTTTTGATAAATGATCA AAATGAGCCAGTTATCAGAGAAGAGACAGTTCGTACTTCAAAAGAAAAACACACACACAA AATCAGTTGCTGGTTCCTAACAGGAAAAGTACATTTTAATAATTGTGTGAGAAGCTGCTT AAACGTCTGCGTTGCGGATCAGATCCTTGGAGTTAACGTGTTAGTCGCATAGATGGGTGA TTGTAACTTTATTGCCATTAAAAGATTTCAGGTTGCATTCCTGCTTCTGTGTACACCTAA TGAAAAGCGGGCAAAATAATGAAGGTCGGTGTTTCCTTAAGTCTGCTGTTGACTTCTGCT GTCTGCTCTCCCACAATGCTGCGTCTCTAATTGTACACAGTTAGTGATGCCTAGGAGTAT AAAGTTGTCGCCCATCAATAAAAATCACAGCGTTGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 87 entry(ies) | More info |
| Aligned organism(s): 87 entry(ies) | Help | Less info |
| 74-180, gnl|bosTau2|chr18 (11967247-11967141) | |
| 74-180, gnl|canFam2|chr5 (70751020-70751092) | |
| 74-180, gnl|canFam2|chr5 (70751141-70750984) | |
| 74-180, gnl|danRer3|chr8 (24201317-24201247) | |
| 74-180, gnl|danRer3|chr8 (24201196-24201320) | |
| 74-180, gnl|dasNov1|scaffold_81903 (1218-1146) | |
| 74-180, gnl|dasNov1|scaffold_81903 (1097-1255) | |
| 74-180, gnl|echTel1|scaffold_283123 (13962-13890) | |
| 74-180, gnl|echTel1|scaffold_283123 (13843-13966) | |
| 74-180, gnl|fr1|chrUn (191637733-191637661) | |
| 74-180, gnl|fr1|chrUn (191637615-191637740) | |
| 74-180, gnl|galGal2|chr11 (17279624-17279552) | |
| 74-180, gnl|galGal2|chr11 (17279503-17279629) | |
| 74-180, gnl|hg17|chr14 (18482269-18482339) | |
| 74-180, gnl|hg17|chr16 (83351263-83351421) | |
| 74-180, gnl|Hg17|chr16 (83351277-83351383) | |
| 74-180, gnl|loxAfr1|scaffold_1357 (50471-50543) | |
| 74-180, gnl|loxAfr1|scaffold_1357 (50592-50435) | |
| 74-180, gnl|mm7|chr8 (118584484-118584415) | |
| 74-180, gnl|mm7|chr8 (118584365-118584510) | |
| 74-180, gnl|Mm7|chr8 (118584380-118584486) | |
| 74-180, gnl|monDom2|scaffold_125 (2727250-2727322) | |
| 74-180, gnl|monDom2|scaffold_23 (15682358-15682200) | |
| 74-180, gnl|oryCun1|scaffold_113569 (617-686) | |
| 74-180, gnl|oryCun1|scaffold_113569 (735-598) | |
| 74-180, gnl|panTro1|chr18 (78254425-78254583) | |
| 74-180, gnl|panTro1|chrUn_random (20586769-20586699) | |
| 74-180, gnl|rheMac2|chr20 (82894901-82895059) | |
| 74-180, gnl|rheMac2|chr3 (73851178-73851250) | |
| 74-180, gnl|rn3|chr19 (50239717-50239648) | |
| 74-180, gnl|rn3|chr19 (50239600-50239737) | |
| 74-180, gnl|tetNig1|chr5 (5627957-5627885) | |
| 74-180, gnl|tetNig1|chr5 (5627838-5627958) | |
| 74-180, gnl|xenTro1|scaffold_79 (2493020-2492948) | |
| 74-180, gnl|xenTro1|scaffold_79 (2492899-2493030) | |
| 280-459, gnl|bosTau2|chr18 (11963902-11963723) | |
| 280-459, gnl|canFam2|chr5 (70747707-70747554) | |
| 280-459, gnl|canFam2|chr5 (70747721-70747487) | |
| 280-459, gnl|danRer3|chr8 (24205770-24205911) | |
| 280-459, gnl|danRer3|chr8 (24205755-24205968) | |
| 280-459, gnl|dasNov1|scaffold_81903 (5323-5473) | |
| 280-459, gnl|dasNov1|scaffold_81903 (5309-5538) | |
| 280-459, gnl|echTel1|scaffold_283123 (15724-15877) | |
| 280-459, gnl|echTel1|scaffold_283123 (15710-15928) | |
| 280-459, gnl|fr1|chrUn (191638860-191639016) | |
| 280-459, gnl|fr1|chrUn (191638837-191639046) | |
| 280-459, gnl|galGal2|chr11 (17282239-17282395) | |
| 280-459, gnl|galGal2|chr11 (17282225-17282441) | |
| 280-459, gnl|hg17|chr16 (83355180-83355414) | |
| 280-459, gnl|Hg17|chr16 (83355193-83355371) | |
| 280-459, gnl|hg17|chr22 (14789779-14789928) | |
| 280-459, gnl|loxAfr1|scaffold_1357 (47123-46970) | |
| 280-459, gnl|loxAfr1|scaffold_1357 (47137-46907) | |
| 280-459, gnl|mm7|chr8 (118587625-118587778) | |
| 280-459, gnl|mm7|chr8 (118587611-118587828) | |
| 280-459, gnl|Mm7|chr8 (118587624-118587802) | |
| 280-459, gnl|monDom2|scaffold_125 (2727150-2727000) | |
| 280-459, gnl|monDom2|scaffold_23 (15678987-15678773) | |
| 280-459, gnl|panTro1|chr18 (78258599-78258833) | |
| 280-459, gnl|panTro1|chrUn_random (20586871-20587025) | |
| 280-459, gnl|rheMac2|chr20 (82898928-82899162) | |
| 280-459, gnl|rheMac2|chr3 (73851078-73850925) | |
| 280-459, gnl|rn3|chr19 (50242380-50242532) | |
| 280-459, gnl|rn3|chr19 (50242365-50242582) | |
| 280-459, gnl|tetNig1|chr5 (5628863-5629009) | |
| 280-459, gnl|tetNig1|chr5 (5628850-5629039) | |
| 280-459, gnl|xenTro1|scaffold_79 (2494486-2494622) | |
| 280-459, gnl|xenTro1|scaffold_79 (2494471-2494657) | |
| 622-768, gnl|bosTau2|chr18 (11959886-11959740) | |
| 622-768, gnl|canFam2|chr5 (70741564-70741670) | |
| 622-768, gnl|danRer3|chr8 (24208289-24208183) | |
| 622-768, gnl|fr1|chrUn (191640354-191640248) | |
| 622-768, gnl|galGal2|chr11 (17297064-17296958) | |
| 622-768, gnl|hg17|chr14 (18481689-18481794) | |
| 622-768, gnl|Hg17|chr16 (83363646-83363792) | |
| 622-768, gnl|loxAfr1|scaffold_1357 (38267-38348) | |
| 622-768, gnl|mm7|chr8 (118590635-118590529) | |
| 622-768, gnl|Mm7|chr8 (118590490-118590636) | |
| 622-768, gnl|monDom2|scaffold_125 (2726668-2726773) | |
| 622-768, gnl|panTro1|chrUn_random (20587360-20587255) | |
| 622-768, gnl|rheMac2|chr3 (73850605-73850711) | |
| 622-768, gnl|rn3|chr19 (50246972-50246866) | |
| 622-768, gnl|tetNig1|chr5 (5630586-5630480) | |
| 622-768, gnl|xenTro1|scaffold_79 (2500848-2500742) | |
| 828-1836, gnl|bosTau2|chr18 (11956157-11955149) | |
| 828-1836, gnl|Hg17|chr16 (83369995-83371023) | |
| 828-1836, gnl|Mm7|chr8 (118592279-118593257) |
| Aligned organism(s): 87 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 74-180, gnl|bosTau2|chr18 (11967247-11967141) | |
| 74-180, gnl|canFam2|chr5 (70751020-70751092) | |
| 74-180, gnl|canFam2|chr5 (70751141-70750984) | |
| 74-180, gnl|danRer3|chr8 (24201317-24201247) | |
| 74-180, gnl|danRer3|chr8 (24201196-24201320) | |
| 74-180, gnl|dasNov1|scaffold_81903 (1218-1146) | |
| 74-180, gnl|dasNov1|scaffold_81903 (1097-1255) | |
| 74-180, gnl|echTel1|scaffold_283123 (13962-13890) | |
| 74-180, gnl|echTel1|scaffold_283123 (13843-13966) | |
| 74-180, gnl|fr1|chrUn (191637733-191637661) | |
| 74-180, gnl|fr1|chrUn (191637615-191637740) | |
| 74-180, gnl|galGal2|chr11 (17279624-17279552) | |
| 74-180, gnl|galGal2|chr11 (17279503-17279629) | |
| 74-180, gnl|hg17|chr14 (18482269-18482339) | |
| 74-180, gnl|hg17|chr16 (83351263-83351421) | |
| 74-180, gnl|Hg17|chr16 (83351277-83351383) | |
| 74-180, gnl|loxAfr1|scaffold_1357 (50471-50543) | |
| 74-180, gnl|loxAfr1|scaffold_1357 (50592-50435) | |
| 74-180, gnl|mm7|chr8 (118584484-118584415) | |
| 74-180, gnl|mm7|chr8 (118584365-118584510) | |
| 74-180, gnl|Mm7|chr8 (118584380-118584486) | |
| 74-180, gnl|monDom2|scaffold_125 (2727250-2727322) | |
| 74-180, gnl|monDom2|scaffold_23 (15682358-15682200) | |
| 74-180, gnl|oryCun1|scaffold_113569 (617-686) | |
| 74-180, gnl|oryCun1|scaffold_113569 (735-598) | |
| 74-180, gnl|panTro1|chr18 (78254425-78254583) | |
| 74-180, gnl|panTro1|chrUn_random (20586769-20586699) | |
| 74-180, gnl|rheMac2|chr20 (82894901-82895059) | |
| 74-180, gnl|rheMac2|chr3 (73851178-73851250) | |
| 74-180, gnl|rn3|chr19 (50239717-50239648) | |
| 74-180, gnl|rn3|chr19 (50239600-50239737) | |
| 74-180, gnl|tetNig1|chr5 (5627957-5627885) | |
| 74-180, gnl|tetNig1|chr5 (5627838-5627958) | |
| 74-180, gnl|xenTro1|scaffold_79 (2493020-2492948) | |
| 74-180, gnl|xenTro1|scaffold_79 (2492899-2493030) | |
| 280-459, gnl|bosTau2|chr18 (11963902-11963723) | |
| 280-459, gnl|canFam2|chr5 (70747707-70747554) | |
| 280-459, gnl|canFam2|chr5 (70747721-70747487) | |
| 280-459, gnl|danRer3|chr8 (24205770-24205911) | |
| 280-459, gnl|danRer3|chr8 (24205755-24205968) | |
| 280-459, gnl|dasNov1|scaffold_81903 (5323-5473) | |
| 280-459, gnl|dasNov1|scaffold_81903 (5309-5538) | |
| 280-459, gnl|echTel1|scaffold_283123 (15724-15877) | |
| 280-459, gnl|echTel1|scaffold_283123 (15710-15928) | |
| 280-459, gnl|fr1|chrUn (191638860-191639016) | |
| 280-459, gnl|fr1|chrUn (191638837-191639046) | |
| 280-459, gnl|galGal2|chr11 (17282239-17282395) | |
| 280-459, gnl|galGal2|chr11 (17282225-17282441) | |
| 280-459, gnl|hg17|chr16 (83355180-83355414) | |
| 280-459, gnl|Hg17|chr16 (83355193-83355371) | |
| 280-459, gnl|hg17|chr22 (14789779-14789928) | |
| 280-459, gnl|loxAfr1|scaffold_1357 (47123-46970) | |
| 280-459, gnl|loxAfr1|scaffold_1357 (47137-46907) | |
| 280-459, gnl|mm7|chr8 (118587625-118587778) | |
| 280-459, gnl|mm7|chr8 (118587611-118587828) | |
| 280-459, gnl|Mm7|chr8 (118587624-118587802) | |
| 280-459, gnl|monDom2|scaffold_125 (2727150-2727000) | |
| 280-459, gnl|monDom2|scaffold_23 (15678987-15678773) | |
| 280-459, gnl|panTro1|chr18 (78258599-78258833) | |
| 280-459, gnl|panTro1|chrUn_random (20586871-20587025) | |
| 280-459, gnl|rheMac2|chr20 (82898928-82899162) | |
| 280-459, gnl|rheMac2|chr3 (73851078-73850925) | |
| 280-459, gnl|rn3|chr19 (50242380-50242532) | |
| 280-459, gnl|rn3|chr19 (50242365-50242582) | |
| 280-459, gnl|tetNig1|chr5 (5628863-5629009) | |
| 280-459, gnl|tetNig1|chr5 (5628850-5629039) | |
| 280-459, gnl|xenTro1|scaffold_79 (2494486-2494622) | |
| 280-459, gnl|xenTro1|scaffold_79 (2494471-2494657) | |
| 622-768, gnl|bosTau2|chr18 (11959886-11959740) | |
| 622-768, gnl|canFam2|chr5 (70741564-70741670) | |
| 622-768, gnl|danRer3|chr8 (24208289-24208183) | |
| 622-768, gnl|fr1|chrUn (191640354-191640248) | |
| 622-768, gnl|galGal2|chr11 (17297064-17296958) | |
| 622-768, gnl|hg17|chr14 (18481689-18481794) | |
| 622-768, gnl|Hg17|chr16 (83363646-83363792) | |
| 622-768, gnl|loxAfr1|scaffold_1357 (38267-38348) | |
| 622-768, gnl|mm7|chr8 (118590635-118590529) | |
| 622-768, gnl|Mm7|chr8 (118590490-118590636) | |
| 622-768, gnl|monDom2|scaffold_125 (2726668-2726773) | |
| 622-768, gnl|panTro1|chrUn_random (20587360-20587255) | |
| 622-768, gnl|rheMac2|chr3 (73850605-73850711) | |
| 622-768, gnl|rn3|chr19 (50246972-50246866) | |
| 622-768, gnl|tetNig1|chr5 (5630586-5630480) | |
| 622-768, gnl|xenTro1|scaffold_79 (2500848-2500742) | |
| 828-1836, gnl|bosTau2|chr18 (11956157-11955149) | |
| 828-1836, gnl|Hg17|chr16 (83369995-83371023) | |
| 828-1836, gnl|Mm7|chr8 (118592279-118593257) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| pgl (0.35545) | |
| sme (0.305437) | |
| lun (0.300978) | |
| ski (0.29347) | |
| spl (0.286369) | |
| cga (0.279096) | |
| ste (0.270416) | |
| ova (0.258264) | |
| sug (0.254582) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| sag (0.182715) | |
| ill (0.175593) | |
| rec (0.17307) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| cov (0.132153) | |
| kid (0.129735) | |
| bla (0.124347) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.35545) | |
| sme (0.305437) | |
| lun (0.300978) | |
| ski (0.29347) | |
| spl (0.286369) | |
| cga (0.279096) | |
| ste (0.270416) | |
| ova (0.258264) | |
| sug (0.254582) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| sag (0.182715) | |
| ill (0.175593) | |
| rec (0.17307) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| cov (0.132153) | |
| kid (0.129735) | |
| bla (0.124347) |