Non-Coding RNA Search

Ss1.1-Pig4-TMW8028I23.5

Sequence:


               
               AACACGTCGGGGGGCCCCGCCGACACCAGCGACCCACTGCAGCAGATCTGCAAGATCCTC
AATGCGCACATGGACTCCCTGCAGTGGATCGACCAGAACTCGGCCCTGCTGCAGAGGAAG
GTGGAGGAGGTGACCAAGGTGTGCGAGGGCCGGCGCAAGGAGCAGGAGCGCAGCCTCCGC
ATCACCTTCGACTAAGCCCAGGGCGTCACCCGGCAGCGCGCATGTGCCGTGTGGAACGTG
CAGTCACTGTCTTGGTTCTGGTTGCAACGAAATACTTGGTTGGTTGGTTGCTTGCTTCTT
TCTTTCTTTCCTTCAGATAGCTGTGCTGTTGAGAGCACTGTCCCATGGTTTGACTTTTCG
TCTTAGGGGGTAGCAAGTATTCTTAGCACTCCGATCCAGGCAGCAGCTTAGTAGGTGTGG
CGTCTGTGTGTTCTGGACCCTCTCCGCCTGCCGCCCCCCCCCCACCTCCAAGTGGTGGAG
AAGCGCTGAGCCACCTCAGAAGCCCGGCTCCCAGCCAGGGGGCCCAGCACACAGTTGTGG
GTGCAGGGAGAAAAGACTGAGGTGCAGGAGTCTCCGTCCTGGAGGAGCCAGCAATCGAGG
GTAAATGTAGTCAGTACAAAGAAGTGACTTAGGAATGGAACGGACAGTGGGAGGTAGAAT
TTCAAAGGCGGAAAGATAGGTCTGCTGAGGGGCTGGAATGAAGATGTCTCATCTTGCCTG
GCTGACCCCTCCTCCAGGAAGCCCTCTCTGCCACCCCGAGCCTGAGTCAGGTGGCCGTCC
TGTGAGCCCCACAACGCGGAGCTAGTGAGTACCCAGTTCACGACCCCTTTGGTAACGCTC
GCCATGTTGCCTTGTGCCCCTGGCTTGCTTCTCTGCCTCACCCTTAGCTTGCGCGTCCCT
GTGGGCAGGGACTATTTCTTGTTGCCTTTGTGTCCTCAGTGCAATCCTTGTCACACTTGT
CAATTGTATTAACAGTGGACCTGAAACCTGGCATAAAACATTAGTCCACAGAGTGCCCGT
TGAAAGGGCCAGGGTGCCAGAGGTGGCCCCTGACTTGGCTCTGAACCTCTCAACGCCAGA
GCAGACCCGGTCAGTTCGTGAGATGCACGGTGTTCGGAAGACAGGAGCCAGACCACCTGC
ATCCCAGGTGGCTTTTGTATTTGTCTCTACACTCTTTTGCATCCTCTGAAATACCCATGG
CTGTATGTTGCTTTTCTTCTAAAGAAAATAAAAGTTACCGTGGAACCCGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACACGTCGGGGGGCCCCGCCGACACCAGCGACCCACTGCAGCAGATCTGCAAGATCCTC
AATGCGCACATGGACTCCCTGCAGTGGATCGACCAGAACTCGGCCCTGCTGCAGAGGAAG
GTGGAGGAGGTGACCAAGGTGTGCGAGGGCCGGCGCAAGGAGCAGGAGCGCAGCCTCCGC
ATCACCTTCGACTAAGCCCAGGGCGTCACCCGGCAGCGCGCATGTGCCGTGTGGAACGTG
CAGTCACTGTCTTGGTTCTGGTTGCAACGAAATACTTGGTTGGTTGGTTGCTTGCTTCTT
TCTTTCTTTCCTTCAGATAGCTGTGCTGTTGAGAGCACTGTCCCATGGTTTGACTTTTCG
TCTTAGGGGGTAGCAAGTATTCTTAGCACTCCGATCCAGGCAGCAGCTTAGTAGGTGTGG
CGTCTGTGTGTTCTGGACCCTCTCCGCCTGCCGCCCCCCCCCCACCTCCAAGTGGTGGAG
AAGCGCTGAGCCACCTCAGAAGCCCGGCTCCCAGCCAGGGGGCCCAGCACACAGTTGTGG
GTGCAGGGAGAAAAGACTGAGGTGCAGGAGTCTCCGTCCTGGAGGAGCCAGCAATCGAGG
GTAAATGTAGTCAGTACAAAGAAGTGACTTAGGAATGGAACGGACAGTGGGAGGTAGAAT
TTCAAAGGCGGAAAGATAGGTCTGCTGAGGGGCTGGAATGAAGATGTCTCATCTTGCCTG
GCTGACCCCTCCTCCAGGAAGCCCTCTCTGCCACCCCGAGCCTGAGTCAGGTGGCCGTCC
TGTGAGCCCCACAACGCGGAGCTAGTGAGTACCCAGTTCACGACCCCTTTGGTAACGCTC
GCCATGTTGCCTTGTGCCCCTGGCTTGCTTCTCTGCCTCACCCTTAGCTTGCGCGTCCCT
GTGGGCAGGGACTATTTCTTGTTGCCTTTGTGTCCTCAGTGCAATCCTTGTCACACTTGT
CAATTGTATTAACAGTGGACCTGAAACCTGGCATAAAACATTAGTCCACAGAGTGCCCGT
TGAAAGGGCCAGGGTGCCAGAGGTGGCCCCTGACTTGGCTCTGAACCTCTCAACGCCAGA
GCAGACCCGGTCAGTTCGTGAGATGCACGGTGTTCGGAAGACAGGAGCCAGACCACCTGC
ATCCCAGGTGGCTTTTGTATTTGTCTCTACACTCTTTTGCATCCTCTGAAATACCCATGG
CTGTATGTTGCTTTTCTTCTAAAGAAAATAAAAGTTACCGTGGAACCCGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               1-199, gnl|bosTau2|chr18 (48932651-48932453)
               

               
               1-199, gnl|Hg17|chr19 (55103502-55103302)
               

               
               1-199, gnl|Mm7|chr7 (41004471-41004664)
               


               
               293-1217, gnl|bosTau2|chr18 (48932397-48931520)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-199, gnl|bosTau2|chr18 (48932651-48932453)
               

               
               1-199, gnl|Hg17|chr19 (55103502-55103302)
               

               
               1-199, gnl|Mm7|chr7 (41004471-41004664)
               


               
               293-1217, gnl|bosTau2|chr18 (48932397-48931520)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               fty (0.351679)
               

               
               hyp (0.285673)
               

               
               pla (0.267344)
               

               
               eje (0.197668)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               hyp (0.285673)
               

               
               pla (0.267344)
               

               
               eje (0.197668)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	1-199, gnl\|bosTau2\|chr18 (48932651-48932453)
	1-199, gnl\|Hg17\|chr19 (55103502-55103302)
	1-199, gnl\|Mm7\|chr7 (41004471-41004664)

	293-1217, gnl\|bosTau2\|chr18 (48932397-48931520)

	fty (0.351679)
	hyp (0.285673)
	pla (0.267344)
	eje (0.197668)
	fhi (0.169578)
	pty (0.142714)
	nmm (0.132802)
	ese (0.126502)
	med (0.116252)
	ecc (0.115035)