Non-Coding RNA Search

Ss1.1-Pig4-TMW8028J04.3

Sequence:


               
               CAAAAACTGACAACACAGACTCCAGTGGAACTCAAAGTCCTAAACGCCATTCTGGGTCTT
ACCTTGTGACGTGTCTGTTTAAAAAGAGCTGGAATGGAAACTAAGAATGTGTTATGTGTT
CATTACAACTGCTATGTAGAAATTCTGTTTCAAATGCAACTTTAAAAGACTGAAAAAAAT
TGTAAATAGGTCTGATTCTTGTTAGAGAGTTTTTGTTCTGGAAGCCATATTTGATAGTAT
ACCTTGTCTTCACTGGTCATATTTTGGGAGGCACTCTTGATAGTTAGGAAGAAAATGGTA
AAGCCAAGGATATTTGTACAGTATGTTTTACAAGTATTTAAGTAGCATCCCATCCCATCA
TCCTTTAATTATTGCTTGTCTTAAAATAATGAACACTACAAATAGAAGATATGATATATT
GCTGTTATCAATCATTTCTAGATTATAAACTGACTTAAACTTACATCAGGGAGAAATTGG
TATTTATGCAAAAAAAAATTCTGTTTTAGTCCTTGTGAGTCCATCTAACATCATAATTAA
TCATGTGGCTGTGAAATTCACAGTAATATGGTTCCCGATGAACAAGTTTACCCAGCCTGC
TTTGCTTTACTGCATGAATGAAACTGATGGTTCAATTTCAGAAGTAATGATTAACAGTTC
TGTGGTCACATGATGTGCATATAGATAGCTATAGTGTAACAACTTACACTATTTTGTGCT
CAAAACAAAAATCTGTGTAACTGTAAAACATTGAATGAAACTATTTTACCTGAACTAGAT
TTTATCTGAAAGTAGGTAGAATTTTTGCTATGCTGTAACTTGTTGTATATTCTGGTATTT
GAGGTGAGATGGCTGCTCTTTTATTAATGAGACATGGATCGTGTCTCAACAGAAACTAAA
TGAACATTTCAGAATAAATTATTGCTGTATGTAAACTGTTACTGAAATTGGTATTTGTTT
GAAGGGTCTTATTTCACATTTGTATTAATAATTGTCAAAAGGGCCTCTTTTAAAAGCTTA
TATAAATTTTTTCTTCAAATTCTATGCATTAAGAGTAAAATTCCTCTTACTGTAATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAACTGACAACACAGACTCCAGTGGAACTCAAAGTCCTAAACGCCATTCTGGGTCTT
ACCTTGTGACGTGTCTGTTTAAAAAGAGCTGGAATGGAAACTAAGAATGTGTTATGTGTT
CATTACAACTGCTATGTAGAAATTCTGTTTCAAATGCAACTTTAAAAGACTGAAAAAAAT
TGTAAATAGGTCTGATTCTTGTTAGAGAGTTTTTGTTCTGGAAGCCATATTTGATAGTAT
ACCTTGTCTTCACTGGTCATATTTTGGGAGGCACTCTTGATAGTTAGGAAGAAAATGGTA
AAGCCAAGGATATTTGTACAGTATGTTTTACAAGTATTTAAGTAGCATCCCATCCCATCA
TCCTTTAATTATTGCTTGTCTTAAAATAATGAACACTACAAATAGAAGATATGATATATT
GCTGTTATCAATCATTTCTAGATTATAAACTGACTTAAACTTACATCAGGGAGAAATTGG
TATTTATGCAAAAAAAAATTCTGTTTTAGTCCTTGTGAGTCCATCTAACATCATAATTAA
TCATGTGGCTGTGAAATTCACAGTAATATGGTTCCCGATGAACAAGTTTACCCAGCCTGC
TTTGCTTTACTGCATGAATGAAACTGATGGTTCAATTTCAGAAGTAATGATTAACAGTTC
TGTGGTCACATGATGTGCATATAGATAGCTATAGTGTAACAACTTACACTATTTTGTGCT
CAAAACAAAAATCTGTGTAACTGTAAAACATTGAATGAAACTATTTTACCTGAACTAGAT
TTTATCTGAAAGTAGGTAGAATTTTTGCTATGCTGTAACTTGTTGTATATTCTGGTATTT
GAGGTGAGATGGCTGCTCTTTTATTAATGAGACATGGATCGTGTCTCAACAGAAACTAAA
TGAACATTTCAGAATAAATTATTGCTGTATGTAAACTGTTACTGAAATTGGTATTTGTTT
GAAGGGTCTTATTTCACATTTGTATTAATAATTGTCAAAAGGGCCTCTTTTAAAAGCTTA
TATAAATTTTTTCTTCAAATTCTATGCATTAAGAGTAAAATTCCTCTTACTGTAATAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               475-714, - strand, RNAz p=0.963822
               

               
               830-949, + strand, RNAz p=0.643949

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               475-714, - strand, RNAz p=0.963822
               

               
               830-949, + strand, RNAz p=0.643949

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000038, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000038, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1080, gnl|bosTau2|chr10 (9477630-9478696)
               

               
               1-1080, gnl|Hg17|chr5 (112207643-112208720)
               

               
               1-1080, gnl|Mm7|chr18 (34693967-34695010)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1080, gnl|bosTau2|chr10 (9477630-9478696)
               

               
               1-1080, gnl|Hg17|chr5 (112207643-112208720)
               

               
               1-1080, gnl|Mm7|chr18 (34693967-34695010)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fco (0.628832)
               

               
               vin (0.332557)
               

               
               sug (0.254582)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               vin (0.332557)
               

               
               sug (0.254582)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	475-714, - strand, RNAz p=0.963822
	830-949, + strand, RNAz p=0.643949

	1-1080, gnl\|bosTau2\|chr10 (9477630-9478696)
	1-1080, gnl\|Hg17\|chr5 (112207643-112208720)
	1-1080, gnl\|Mm7\|chr18 (34693967-34695010)

	fco (0.628832)
	vin (0.332557)
	sug (0.254582)
	fhi (0.169578)
	mga (0.160205)
	fat (0.147427)
	lyg (0.133103)
	ret (0.128733)
	cbl (0.114797)
	spc (0.113366)