Non-Coding RNA Search

Ss1.1-Pig4-TMW8028J06.3

Sequence:


               
               AAATACCTTGGTCATTTTTTTTTTTTTTATATTGCCTTATTTCCTTATGGCTGAGCCTTG
TTGTGACACATCAAGATTTTCTACAGATGTTGTCTTGGCTTCCCACCAGATTAAGCATTT
ATATGCTCTGCTTTTAGTTTATATATACATACATAATATTTTTTTCCTTTCTTAATTTTG
TCTTTTAATTTGGGATCAGCTTCTTGCACTCCTTTCTTGACTCAACCCTTTCTGTCTCCC
CTTCTCTCACCTGATCACTTCATGTTTTGTTTTTGGTAGTAGTCCCTGGATGAGGCACTT
CTGTCATTCTTTTAAAGTCCTTAGTCCCAGCAGCAGAATGGAGAATCCTTGAAGCTCAGG
CGGATGCTTGAGGTAGCTCTGAAGAGAGTGTTCAAAATACTACTGACGCAGGCACCCTCT
TGGCGCTGGAGAGTCAAAGGCACCTCTCTCTTCATTAGCTGCTCTAAGCAACAAGAATCA
GAAGTCTTTCTATGGGATTATACAAGAGACCCTTTGAAGGTTATCATCTGGGATCAGTTT
GTATAAACTGAGAAAAGATGGTCAAATAATAAGTAGGGGCTTTCAGTAGGAAAATGATGG
GCTCAGAAGTGGAAGTAACTCAAGTGGTCCAGGCCAGGAGTTAGTGGAGTATTTGGACCT
TTGTACAGCTGTCTTCCAGGGTAGCTCTAAGCTTTGTTATGTGGGCTTCTGAGTTCACAT
TCTGAAAGGAAATACACTTCCTCTCTTGAACATCCCCAATAGTTTCTTTCCCATTATGTT
ATTAAGGAGCATCAGCCAATGAACCTGTTCTGGACTTCCATTCTGCAGAACTCCAGAGCA
TGTACCAGTGGCAAGGCAGTTCTTTGATCTTTTCCCTTAATTCTTCCTTGGGTGGTTCCT
AAGGGAAAAGAGTGCACACACGATCATGGGAATGATAGCCCAGAACAAAAAGAAATCTTG
TCTTACCACTGGGGTTTATAGGAGAGATCAGGAAAAACCATCCTGCTTTCTTCGTGGCCT
GATTTCTGAAGAGACTGATCCAAAAATTATAGCGGCAGGGAACTCTTAGTGCATTTGGCA
CTGAGATTTAAATGCAACCAGAGTTGTCCTCAAGGCCCAGCCATTAAAACATTGTCTCTC
TCGACCTTCTGGTATCTTGTCAGAGAGCTTTTCACTGTGAGGAAGTGTGGAAATGGCTGT
GTGTATGTGTGTAATCTGTTAGGTTGGGGGTAGGTTTTCTGTTAGCCAATACTATGAGAG
ACCTGCAATAAAAAATTACCCTGATCTGATAGAAAGTGAACTGTTTGTGTATGACTGTGT
GTGAATGTGTGTTTGTGCCTGTATATATCTACACACAGATAAGAAATTATATTTGAAATT
GTTGGAAAATAAATCAAATTCAGATCAAAATGCCTTTCAGGCCCATTACCTAGAAATCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATACCTTGGTCATTTTTTTTTTTTTTATATTGCCTTATTTCCTTATGGCTGAGCCTTG
TTGTGACACATCAAGATTTTCTACAGATGTTGTCTTGGCTTCCCACCAGATTAAGCATTT
ATATGCTCTGCTTTTAGTTTATATATACATACATAATATTTTTTTCCTTTCTTAATTTTG
TCTTTTAATTTGGGATCAGCTTCTTGCACTCCTTTCTTGACTCAACCCTTTCTGTCTCCC
CTTCTCTCACCTGATCACTTCATGTTTTGTTTTTGGTAGTAGTCCCTGGATGAGGCACTT
CTGTCATTCTTTTAAAGTCCTTAGTCCCAGCAGCAGAATGGAGAATCCTTGAAGCTCAGG
CGGATGCTTGAGGTAGCTCTGAAGAGAGTGTTCAAAATACTACTGACGCAGGCACCCTCT
TGGCGCTGGAGAGTCAAAGGCACCTCTCTCTTCATTAGCTGCTCTAAGCAACAAGAATCA
GAAGTCTTTCTATGGGATTATACAAGAGACCCTTTGAAGGTTATCATCTGGGATCAGTTT
GTATAAACTGAGAAAAGATGGTCAAATAATAAGTAGGGGCTTTCAGTAGGAAAATGATGG
GCTCAGAAGTGGAAGTAACTCAAGTGGTCCAGGCCAGGAGTTAGTGGAGTATTTGGACCT
TTGTACAGCTGTCTTCCAGGGTAGCTCTAAGCTTTGTTATGTGGGCTTCTGAGTTCACAT
TCTGAAAGGAAATACACTTCCTCTCTTGAACATCCCCAATAGTTTCTTTCCCATTATGTT
ATTAAGGAGCATCAGCCAATGAACCTGTTCTGGACTTCCATTCTGCAGAACTCCAGAGCA
TGTACCAGTGGCAAGGCAGTTCTTTGATCTTTTCCCTTAATTCTTCCTTGGGTGGTTCCT
AAGGGAAAAGAGTGCACACACGATCATGGGAATGATAGCCCAGAACAAAAAGAAATCTTG
TCTTACCACTGGGGTTTATAGGAGAGATCAGGAAAAACCATCCTGCTTTCTTCGTGGCCT
GATTTCTGAAGAGACTGATCCAAAAATTATAGCGGCAGGGAACTCTTAGTGCATTTGGCA
CTGAGATTTAAATGCAACCAGAGTTGTCCTCAAGGCCCAGCCATTAAAACATTGTCTCTC
TCGACCTTCTGGTATCTTGTCAGAGAGCTTTTCACTGTGAGGAAGTGTGGAAATGGCTGT
GTGTATGTGTGTAATCTGTTAGGTTGGGGGTAGGTTTTCTGTTAGCCAATACTATGAGAG
ACCTGCAATAAAAAATTACCCTGATCTGATAGAAAGTGAACTGTTTGTGTATGACTGTGT
GTGAATGTGTGTTTGTGCCTGTATATATCTACACACAGATAAGAAATTATATTTGAAATT
GTTGGAAAATAAATCAAATTCAGATCAAAATGCCTTTCAGGCCCATTACCTAGAAATCTA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               20-218, - strand, RNAz p=0.953857
               

               
               1022-1141, - strand, RNAz p=0.847263
               

               
               1196-1312, - strand, RNAz p=0.913537

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               20-218, - strand, RNAz p=0.953857
               

               
               1022-1141, - strand, RNAz p=0.847263
               

               
               1196-1312, - strand, RNAz p=0.913537

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1440, gnl|bosTau2|chr5 (19039348-19037916)
               

               
               1-1440, gnl|Hg17|chr12 (52091789-52093239)
               

               
               1-1440, gnl|Mm7|chr15 (102417687-102419129)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1440, gnl|bosTau2|chr5 (19039348-19037916)
               

               
               1-1440, gnl|Hg17|chr12 (52091789-52093239)
               

               
               1-1440, gnl|Mm7|chr15 (102417687-102419129)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mgm (0.180343)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               thg (0.126791)
               

               
               clu (0.119646)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               thg (0.126791)
               

               
               clu (0.119646)

	20-218, - strand, RNAz p=0.953857
	1022-1141, - strand, RNAz p=0.847263
	1196-1312, - strand, RNAz p=0.913537

	1-1440, gnl\|bosTau2\|chr5 (19039348-19037916)
	1-1440, gnl\|Hg17\|chr12 (52091789-52093239)
	1-1440, gnl\|Mm7\|chr15 (102417687-102419129)

	mgm (0.180343)
	eli (0.151814)
	liv (0.146284)
	hlv (0.139256)
	thg (0.126791)
	clu (0.119646)