Ss1.1-Pig4-TMW8028J07.5
|
GGTCCGCGTGATCTTCCGCAAGTGCTCCGGTATAGTCCAGGGAGGGGGCTGGCGGAGTCC
GGGAAATTCTCCTGGAGGCCAGGGTGTCTCAGCGGACCGTCGGGGCCCTTCGGAGATATA
AGGCAGAGTCACTTTAATTATTTCTAATATCAATTTCAAACTGTTTACTCTTGGATAACA
GTTCAGTTATATGAAAGTATGGCTGGTTATAAACCTGTAGCGATCCAGACATATCCTATA
CTTGGTGAAAAAATCACTCAAGATACACTGTACTGGAACAACTATAAGACCCCTGTTCAG
ATCAAGGAGTTCGGTGCAGTCTCAAAAGTAGACTTTTCTCCACAGCCTCCGTATAATTAT
GCTGTCACAGCTTCTTCAAGGATTCACATTTATGGCCGATACTCCCAAGAACCTATAAAA
ACCTTTTCACGATTTAAAGACACAGCCTACTGTGCTACTTTTCGACAGGATGGTAGACTG
CTTATAGCTGGCAGTGAAGATGGTGGCGTTCAGCTTTTTGATATAAGTGGGAGGGCTCCC
CTCAGGCAGTTTGAAGGCCATACTAAGTAAGAGACAATTCCTTTTTTTAAATTGAGGTAT
AATTAACATACATTATATTAATTTCAGATGTGCAACATGATTTCGTATTTGGATATATTG
TGAAATGAACACCACAATAAATCTGGTTAACATCTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTCCGCGTGATCTTCCGCAAGTGCTCCGGTATAGTCCAGGGAGGGGGCTGGCGGAGTCC
GGGAAATTCTCCTGGAGGCCAGGGTGTCTCAGCGGACCGTCGGGGCCCTTCGGAGATATA
AGGCAGAGTCACTTTAATTATTTCTAATATCAATTTCAAACTGTTTACTCTTGGATAACA
GTTCAGTTATATGAAAGTATGGCTGGTTATAAACCTGTAGCGATCCAGACATATCCTATA
CTTGGTGAAAAAATCACTCAAGATACACTGTACTGGAACAACTATAAGACCCCTGTTCAG
ATCAAGGAGTTCGGTGCAGTCTCAAAAGTAGACTTTTCTCCACAGCCTCCGTATAATTAT
GCTGTCACAGCTTCTTCAAGGATTCACATTTATGGCCGATACTCCCAAGAACCTATAAAA
ACCTTTTCACGATTTAAAGACACAGCCTACTGTGCTACTTTTCGACAGGATGGTAGACTG
CTTATAGCTGGCAGTGAAGATGGTGGCGTTCAGCTTTTTGATATAAGTGGGAGGGCTCCC
CTCAGGCAGTTTGAAGGCCATACTAAGTAAGAGACAATTCCTTTTTTTAAATTGAGGTAT
AATTAACATACATTATATTAATTTCAGATGTGCAACATGATTTCGTATTTGGATATATTG
TGAAATGAACACCACAATAAATCTGGTTAACATCTA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
114-288, gnl|bosTau2|chr20 (3631435-3631600) |
|
114-288, gnl|Hg17|chr5 (72898841-72899015) |
|
114-288, gnl|Mm7|chr13 (95330834-95330661) |
| |
|
381-695, gnl|bosTau2|chr20 (3632761-3633071) |
|
381-695, gnl|canFam2|chr2 (59252979-59253209) |
|
381-695, gnl|dasNov1|scaffold_136739 (2766-3004) |
|
381-695, gnl|echTel1|scaffold_314135 (4219-4470) |
|
381-695, gnl|fr1|chrUn (114493485-114493267) |
|
381-695, gnl|galGal2|chrUn (132992669-132992437) |
|
381-695, gnl|hg17|chr5 (72899972-72900209) |
|
381-695, gnl|loxAfr1|scaffold_88045 (2217-1975) |
|
381-695, gnl|mm7|chr13 (95329182-95328952) |
|
381-695, gnl|monDom2|scaffold_60 (7068868-7069132) |
|
381-695, gnl|oryCun1|scaffold_172486 (21242-21480) |
|
381-695, gnl|panTro1|chr4 (42566630-42566393) |
|
381-695, gnl|rheMac2|chr6 (69761923-69762160) |
|
381-695, gnl|rn3|chr2 (28769519-28769287) |
|
381-695, gnl|tetNig1|chr12 (3277885-3278104) |
|
381-695, gnl|xenTro1|scaffold_120 (1152760-1153001) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
114-288, gnl|bosTau2|chr20 (3631435-3631600) |
|
114-288, gnl|Hg17|chr5 (72898841-72899015) |
|
114-288, gnl|Mm7|chr13 (95330834-95330661) |
| |
|
381-695, gnl|bosTau2|chr20 (3632761-3633071) |
|
381-695, gnl|canFam2|chr2 (59252979-59253209) |
|
381-695, gnl|dasNov1|scaffold_136739 (2766-3004) |
|
381-695, gnl|echTel1|scaffold_314135 (4219-4470) |
|
381-695, gnl|fr1|chrUn (114493485-114493267) |
|
381-695, gnl|galGal2|chrUn (132992669-132992437) |
|
381-695, gnl|hg17|chr5 (72899972-72900209) |
|
381-695, gnl|loxAfr1|scaffold_88045 (2217-1975) |
|
381-695, gnl|mm7|chr13 (95329182-95328952) |
|
381-695, gnl|monDom2|scaffold_60 (7068868-7069132) |
|
381-695, gnl|oryCun1|scaffold_172486 (21242-21480) |
|
381-695, gnl|panTro1|chr4 (42566630-42566393) |
|
381-695, gnl|rheMac2|chr6 (69761923-69762160) |
|
381-695, gnl|rn3|chr2 (28769519-28769287) |
|
381-695, gnl|tetNig1|chr12 (3277885-3278104) |
|
381-695, gnl|xenTro1|scaffold_120 (1152760-1153001) |
|
cbe (0.478469) |
|
nco (0.161734) |
|
ute (0.132784) |
|
cbe (0.478469) |
|
nco (0.161734) |
|
ute (0.132784) |
