Non-Coding RNA Search

Ss1.1-Pig4-TMW8028J12.5

Sequence:


               
               ATTTTGCTGCTATTACCACACACACTGCAAAAGCAGACAGACACTTCCTTAGCGCACTTC
AGCCCTTGTTACGGAGCCTGCACAGTACAGGAGGTACAACTGCCTCCCCCTGACCCCCCG
CCACCCTGCTGCCTCCTCCGACCCCTCTGTTCTCCCTCCTGGGCGTACACAGGCTGGGGA
GCACTCCATGGGCTATTTGGTGTCTTCTCTGGGCTGCTGAGAAAGGCTCATTTGGCACAA
TGAGGAAGGGGCTACCAGAGTTTCCAAATCCCTTTCTAAAACAGGTGCTGGCAGCCTGAA
TAAATCAGGAAGTCTCTTATTTCTTCTCTACTCTGGAAGCCTTTGGGCCCTTGGCTTCTC
AGTCTCAGTTCAACCTCTGCCCCTAGGCTCAGTCTCACTGTGACCTGAACCAAGTCACTT
CGTTGCTCTGTTCCTTGGAGTCTTTTTTTCAAATTGACGGTACTGGACCAGGAAAAGTCT
AGGACCTTCCAGCTCTCAAGTGCCATGATTCAGTGTGACTCGACTCTGTCGATCCAAGTA
GAACTTGAGGTCTCTTGGTCCATGTGTGGAGGACTCGGGATCAAAATCAGTGAACTCAGC
AAAGCCTTTGAAGGTGCCGGCCCGAGTGGACTCATGATCTGTAAGCAAAGGGTCAGTGTG
AGCACCCAAAGAAGATAAGGCTGTGAGGCTGAGTGTGGAAGGCTGTGCAGGCCAGGTATT
GGGCCTTGGACGTCATCCCGTACACAGAGGGAAGCTCTTTGAGCAGGGGCGGGGTAACTG
GTTGGAGCTATGTTTAGAAAGATTAACCAAACTGCAGGATGGAGAGAATGCAGAGGTGAG
CAGGTTAGGAGGCCACAGTCATGACCTGTGCCACGGCCACAGATGAGGCCTCCAGCCTCC
TTCCCCCCAGCCCCTGAGCCAGCCCTGGTGGGGGGGTCCAGGCCCCAAGATACAAGACTA
TCCCATGATAGTCACACCCCACCTGTGGAAATTACAATTGTAAGAAACGTGAGTATGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGCTGCTATTACCACACACACTGCAAAAGCAGACAGACACTTCCTTAGCGCACTTC
AGCCCTTGTTACGGAGCCTGCACAGTACAGGAGGTACAACTGCCTCCCCCTGACCCCCCG
CCACCCTGCTGCCTCCTCCGACCCCTCTGTTCTCCCTCCTGGGCGTACACAGGCTGGGGA
GCACTCCATGGGCTATTTGGTGTCTTCTCTGGGCTGCTGAGAAAGGCTCATTTGGCACAA
TGAGGAAGGGGCTACCAGAGTTTCCAAATCCCTTTCTAAAACAGGTGCTGGCAGCCTGAA
TAAATCAGGAAGTCTCTTATTTCTTCTCTACTCTGGAAGCCTTTGGGCCCTTGGCTTCTC
AGTCTCAGTTCAACCTCTGCCCCTAGGCTCAGTCTCACTGTGACCTGAACCAAGTCACTT
CGTTGCTCTGTTCCTTGGAGTCTTTTTTTCAAATTGACGGTACTGGACCAGGAAAAGTCT
AGGACCTTCCAGCTCTCAAGTGCCATGATTCAGTGTGACTCGACTCTGTCGATCCAAGTA
GAACTTGAGGTCTCTTGGTCCATGTGTGGAGGACTCGGGATCAAAATCAGTGAACTCAGC
AAAGCCTTTGAAGGTGCCGGCCCGAGTGGACTCATGATCTGTAAGCAAAGGGTCAGTGTG
AGCACCCAAAGAAGATAAGGCTGTGAGGCTGAGTGTGGAAGGCTGTGCAGGCCAGGTATT
GGGCCTTGGACGTCATCCCGTACACAGAGGGAAGCTCTTTGAGCAGGGGCGGGGTAACTG
GTTGGAGCTATGTTTAGAAAGATTAACCAAACTGCAGGATGGAGAGAATGCAGAGGTGAG
CAGGTTAGGAGGCCACAGTCATGACCTGTGCCACGGCCACAGATGAGGCCTCCAGCCTCC
TTCCCCCCAGCCCCTGAGCCAGCCCTGGTGGGGGGGTCCAGGCCCCAAGATACAAGACTA
TCCCATGATAGTCACACCCCACCTGTGGAAATTACAATTGTAAGAAACGTGAGTATGGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               96-191, - strand, RNAz p=0.759389

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-191, - strand, RNAz p=0.759389

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1020, gnl|bosTau2|chr11 (23312002-23310968)
               

               
               2-1020, gnl|Hg17|chr2 (46496897-46498290)
               

               
               2-1020, gnl|Mm7|chr17 (85109474-85110515)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1020, gnl|bosTau2|chr11 (23312002-23310968)
               

               
               2-1020, gnl|Hg17|chr2 (46496897-46498290)
               

               
               2-1020, gnl|Mm7|chr17 (85109474-85110515)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               che (0.136314)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               pla (0.133672)

	2-1020, gnl\|bosTau2\|chr11 (23312002-23310968)
	2-1020, gnl\|Hg17\|chr2 (46496897-46498290)
	2-1020, gnl\|Mm7\|chr17 (85109474-85110515)