Non-Coding RNA Search

Ss1.1-Pig4-TMW8028J13.5

Sequence:


               
               TATTATACAATTCTGTATTGAGCGACGTGTTTATTACAGAACGTGTTCCTTTTTTTTTTT
TTTAATTTAAACAAAGTTCATCAATCTCTCATAGAAACGGTTTTGTGGGTTTTTGTTCTG
TTTACCGTTATAGGACGTGAACCTGACAAAGTTGTTCACGGGTCTGCTAGCTTTAAGTAC
AACAGGATTTCCGCGTTCAAAAGACTATACTAAGTGCTTAATCAAATCCCGTCACACAAA
AGCCAGATTTAGTCCTCTAACAACTGCAGTCTGCATGTAAGCCTGGATTTCAATGTTGTG
TGGGTTTCAACAGTAAAAAGTGGTGTGTCCCCCATGGGTGCCTTAATTGGGACAGGGCAG
CGGTGGCTAAAGGGAGATGTTTCATTTGTTCCAGATTTGATGACTCTGAAAATTGGTCAC
TGTTTCCTATTGTCAAAATACAAAAATACCTTCATCTGGATAAAAATGTATACAGTGGAA
AACTCTTCAATGCATAGCCTGGGTGTATGGAAAAGGAGGTTTTTCCTGCAGGGTTTGCGT
TGCTCTTCATTGACTGGTGTGGAGACTGCAGCCTGGGCTGGGTGCATGAGAGTTGAGATT
TCTGGAACGGCCCTCAACTGTCCCCTTCTGGTCACTGGATTTTGTTGGCCTGAGTTCCGA
AATGTTCGCTGTATCCTTGAAACCCCCAGGCATTGGGTTGGCACCACTATGACCACCTTT
TCATCGTCATTCTTTATTCAGCTGCAAAGTCACCCAACTCAGCTTCCCCACAGAGTTTGA
GAAAAATAAAAGAAACAGCAGGAACTCCTGTTTGCACATGTTTAAGTGGATCACAATTTC
TTTCAACGCAACAACAACCGATGTGAAAACACCCAGTGAATATTTGTTCTGTACTCCTAT
TCTCTTCTGTTTTACCAGGGCCTGGCGCACACACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTATACAATTCTGTATTGAGCGACGTGTTTATTACAGAACGTGTTCCTTTTTTTTTTT
TTTAATTTAAACAAAGTTCATCAATCTCTCATAGAAACGGTTTTGTGGGTTTTTGTTCTG
TTTACCGTTATAGGACGTGAACCTGACAAAGTTGTTCACGGGTCTGCTAGCTTTAAGTAC
AACAGGATTTCCGCGTTCAAAAGACTATACTAAGTGCTTAATCAAATCCCGTCACACAAA
AGCCAGATTTAGTCCTCTAACAACTGCAGTCTGCATGTAAGCCTGGATTTCAATGTTGTG
TGGGTTTCAACAGTAAAAAGTGGTGTGTCCCCCATGGGTGCCTTAATTGGGACAGGGCAG
CGGTGGCTAAAGGGAGATGTTTCATTTGTTCCAGATTTGATGACTCTGAAAATTGGTCAC
TGTTTCCTATTGTCAAAATACAAAAATACCTTCATCTGGATAAAAATGTATACAGTGGAA
AACTCTTCAATGCATAGCCTGGGTGTATGGAAAAGGAGGTTTTTCCTGCAGGGTTTGCGT
TGCTCTTCATTGACTGGTGTGGAGACTGCAGCCTGGGCTGGGTGCATGAGAGTTGAGATT
TCTGGAACGGCCCTCAACTGTCCCCTTCTGGTCACTGGATTTTGTTGGCCTGAGTTCCGA
AATGTTCGCTGTATCCTTGAAACCCCCAGGCATTGGGTTGGCACCACTATGACCACCTTT
TCATCGTCATTCTTTATTCAGCTGCAAAGTCACCCAACTCAGCTTCCCCACAGAGTTTGA
GAAAAATAAAAGAAACAGCAGGAACTCCTGTTTGCACATGTTTAAGTGGATCACAATTTC
TTTCAACGCAACAACAACCGATGTGAAAACACCCAGTGAATATTTGTTCTGTACTCCTAT
TCTCTTCTGTTTTACCAGGGCCTGGCGCACACACTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               485-600, + strand, RNAz p=0.907253

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               485-600, + strand, RNAz p=0.907253

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-686, gnl|bosTau2|chr17 (29472900-29473593)
               

               
               1-686, gnl|Hg17|chr12 (110251077-110250406)
               

               
               1-686, gnl|Mm7|chr5 (121092650-121093325)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-686, gnl|bosTau2|chr17 (29472900-29473593)
               

               
               1-686, gnl|Hg17|chr12 (110251077-110250406)
               

               
               1-686, gnl|Mm7|chr5 (121092650-121093325)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fco (0.314416)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

	1-686, gnl\|bosTau2\|chr17 (29472900-29473593)
	1-686, gnl\|Hg17\|chr12 (110251077-110250406)
	1-686, gnl\|Mm7\|chr5 (121092650-121093325)