Non-Coding RNA Search

Ss1.1-Pig4-TMW8028J19.3

Sequence:


               
               GACTTTTGAGTTGGTAACTATGGTAGTGAAATGTTATGAGGCGAACTCTTCACAAACAAT
GCTGCTTTTGTATAGAGCAATTTAATCAGAGAGAGTGGCTATTCTTACTTCAGGGATGCA
AAGACGGGTCTCGTACTGTTTGGATAAATGCCGTGCTGTTTGTGCTCTTCTTCCACTGAC
ACCTTCATCTCTTTCCATGATCAGGTGGGCTCTGTGGCAGCCCAGTGAACCTATGTATTA
ATGGCAGGTTAGGAGCAAATGGAAATTGACTTGTCTGATACAACTGAAATGTATGTTTTA
ATCTTTTACCGAAGCATTGCACTTGAATATTTAAATGCAAATGAAGTTACTTTTAAATTT
CCTGTAGGTTTGTTATGTTTGTTTTCATTTCTAAGGACTCAATTCTTCAGAGCTAAGTCT
ATATGCCATGGTTGATTTCGAAGGGATCAAATCCTATGGAACAAAAGTATTTGGGCAAGT
TGGGCTGTTTGTTCCCCTAGCTGTTTTACCTCTGCAGATGTTTGATGACTAAAAGCATTA
TAAAAATGCAGCGGTTGTTCCCAAGTCCATTTCTTCACCAAGTGGATGCAGGTTCTCTAG
CCACTTTTCAAAAAATCATTGTCACCATTTTCACTCCTGTTAAAGAAATGACAAAGTAGA
GTGACTGCTGCTGATGAGCTGGTTCAGGATGGCTTTGATGGAAATATGATCACTCTTTAG
AGTGTTTCAGGGACAAGTTATTCTTTTCTAAGTTAATACAAGGCTTAAGTGGTAAGTGGT
TGCGATGTCTACAGTTAATGTAACATATAGGGATAACGGTATATTTTTTTAATATAATTT
TTTTGCTGAAAAGTTTTTGGCTACTGTAAATTAATTATGTGATAGAACTTGTGTTGCAAC
AAGATTATAACCCAGACTCTTAAAAATGCTTAATCGTCCATATTCGGTTTCGTCCAGCCT
TGTGTCCTTCTGTTTACATGTAATCCTAACCTTGGTTGTTCTGGCAGACTGAAACTCGGC
AAAAAGGCAGACTCTGGTGCCATGGTAACAGAGAGAGCCACTTTAATCAGGCCAGAGTTT
TGCATTGTGATTACCTTTTTCGGATGGATTTGTCTATTAGGCAATACTGTTAAAGGACTG
TTGTGGCTCCAGACTCCCAAACTGATAAATAAATTAAGTTTTACGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTTTTGAGTTGGTAACTATGGTAGTGAAATGTTATGAGGCGAACTCTTCACAAACAAT
GCTGCTTTTGTATAGAGCAATTTAATCAGAGAGAGTGGCTATTCTTACTTCAGGGATGCA
AAGACGGGTCTCGTACTGTTTGGATAAATGCCGTGCTGTTTGTGCTCTTCTTCCACTGAC
ACCTTCATCTCTTTCCATGATCAGGTGGGCTCTGTGGCAGCCCAGTGAACCTATGTATTA
ATGGCAGGTTAGGAGCAAATGGAAATTGACTTGTCTGATACAACTGAAATGTATGTTTTA
ATCTTTTACCGAAGCATTGCACTTGAATATTTAAATGCAAATGAAGTTACTTTTAAATTT
CCTGTAGGTTTGTTATGTTTGTTTTCATTTCTAAGGACTCAATTCTTCAGAGCTAAGTCT
ATATGCCATGGTTGATTTCGAAGGGATCAAATCCTATGGAACAAAAGTATTTGGGCAAGT
TGGGCTGTTTGTTCCCCTAGCTGTTTTACCTCTGCAGATGTTTGATGACTAAAAGCATTA
TAAAAATGCAGCGGTTGTTCCCAAGTCCATTTCTTCACCAAGTGGATGCAGGTTCTCTAG
CCACTTTTCAAAAAATCATTGTCACCATTTTCACTCCTGTTAAAGAAATGACAAAGTAGA
GTGACTGCTGCTGATGAGCTGGTTCAGGATGGCTTTGATGGAAATATGATCACTCTTTAG
AGTGTTTCAGGGACAAGTTATTCTTTTCTAAGTTAATACAAGGCTTAAGTGGTAAGTGGT
TGCGATGTCTACAGTTAATGTAACATATAGGGATAACGGTATATTTTTTTAATATAATTT
TTTTGCTGAAAAGTTTTTGGCTACTGTAAATTAATTATGTGATAGAACTTGTGTTGCAAC
AAGATTATAACCCAGACTCTTAAAAATGCTTAATCGTCCATATTCGGTTTCGTCCAGCCT
TGTGTCCTTCTGTTTACATGTAATCCTAACCTTGGTTGTTCTGGCAGACTGAAACTCGGC
AAAAAGGCAGACTCTGGTGCCATGGTAACAGAGAGAGCCACTTTAATCAGGCCAGAGTTT
TGCATTGTGATTACCTTTTTCGGATGGATTTGTCTATTAGGCAATACTGTTAAAGGACTG
TTGTGGCTCCAGACTCCCAAACTGATAAATAAATTAAGTTTTACGTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               23-895, gnl|bosTau2|chr29 (3412802-3411919)
               

               
               23-895, gnl|Hg17|chr11 (86710492-86711331)
               

               
               23-895, gnl|Mm7|chr7 (85078449-85077654)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-895, gnl|bosTau2|chr29 (3412802-3411919)
               

               
               23-895, gnl|Hg17|chr11 (86710492-86711331)
               

               
               23-895, gnl|Mm7|chr7 (85078449-85077654)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               aor (0.195274)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)

	23-895, gnl\|bosTau2\|chr29 (3412802-3411919)
	23-895, gnl\|Hg17\|chr11 (86710492-86711331)
	23-895, gnl\|Mm7\|chr7 (85078449-85077654)

	aor (0.195274)
	sin (0.174948)
	fhi (0.169578)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	kid (0.129735)
	ova (0.129132)