Ss1.1-Pig4-TMW8028K02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTGGTGAGCAGCATGGAGGTTCAGTCGGAATCCCAGTCTGGCCCGACCTGTTCGTCGT CCTCCCAGAACCACTCTGGGGTCTCGGTGTCCAAGGAGCTGCTGACGGCGGGGAGCGGCG ACCAAGGAGGTATATGGGACAAGCTGCTCATCAACTCCAAGCCTAATTCCAGAAAGAATT CCACTCTTCAAACAGTTCGGATAGAGAGGAGTCCCTTATTGGACCGAGTACAGACGTTTC TCCCACAGATGGCTCAGGCAAATGAACAGCTAAGAAAAGAAATGGCAGCTGCACCACCTG GTTGTTTCAACATTGAAAATATTGATGAGACTCTCGGAAAAGTTATACAAATGGATGTGG CCTTGTTTGAGATGAATCCATCTGATTCAAAAGAAGAGGACAGTTCAGAAGAGAATTCAC AAGACAGCTCAGCCTCTGAGGACGAAGATGACAGTACCTCTTCCGAAGGCGAAATCACCA TCGATAACATTAAACTTCCTCATTCAGAAGCTGGAAAAGGCAAGATAGAGGTTCTGGACA GTCCTGACAGTGAAAAAAAAGAAACAGGGAAATAAACAATCTAAGAAACAGGTAATAGAT GCCTGCTGATTCTGTGAAGAATAGATCGCTGGTTATTTTGCATTTCAGACATTATGGTGC TTTTATACAATATTGGATGTATTTTTGTTTCTTGGAGAAATAGAAGCTGGCTTTTAAGGA GATGGAATAGATGGCATTTGGGGATCTTCTAAGAGCAGACTGTATTTGATCCATGCTAAA AAGATTTAGTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTGGTGAGCAGCATGGAGGTTCAGTCGGAATCCCAGTCTGGCCCGACCTGTTCGTCGT CCTCCCAGAACCACTCTGGGGTCTCGGTGTCCAAGGAGCTGCTGACGGCGGGGAGCGGCG ACCAAGGAGGTATATGGGACAAGCTGCTCATCAACTCCAAGCCTAATTCCAGAAAGAATT CCACTCTTCAAACAGTTCGGATAGAGAGGAGTCCCTTATTGGACCGAGTACAGACGTTTC TCCCACAGATGGCTCAGGCAAATGAACAGCTAAGAAAAGAAATGGCAGCTGCACCACCTG GTTGTTTCAACATTGAAAATATTGATGAGACTCTCGGAAAAGTTATACAAATGGATGTGG CCTTGTTTGAGATGAATCCATCTGATTCAAAAGAAGAGGACAGTTCAGAAGAGAATTCAC AAGACAGCTCAGCCTCTGAGGACGAAGATGACAGTACCTCTTCCGAAGGCGAAATCACCA TCGATAACATTAAACTTCCTCATTCAGAAGCTGGAAAAGGCAAGATAGAGGTTCTGGACA GTCCTGACAGTGAAAAAAAAGAAACAGGGAAATAAACAATCTAAGAAACAGGTAATAGAT GCCTGCTGATTCTGTGAAGAATAGATCGCTGGTTATTTTGCATTTCAGACATTATGGTGC TTTTATACAATATTGGATGTATTTTTGTTTCTTGGAGAAATAGAAGCTGGCTTTTAAGGA GATGGAATAGATGGCATTTGGGGATCTTCTAAGAGCAGACTGTATTTGATCCATGCTAAA AAGATTTAGTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 8-131, gnl|bosTau2|chr5 (64722554-64722431) | |
| 8-131, gnl|dasNov1|scaffold_82764 (1506-1620) | |
| 8-131, gnl|Hg17|chr12 (103882591-103882714) | |
| 8-131, gnl|hg17|chr6 (75569745-75569879) | |
| 8-131, gnl|Mm7|chr10 (82901761-82901884) | |
| 8-131, gnl|panTro1|chr5 (76914047-76914181) | |
| 8-131, gnl|rheMac2|chr4 (70940405-70940539) | |
| 353-611, gnl|bosTau2|chr5 (64715118-64714846) | |
| 353-611, gnl|canFam2|chr10 (36497676-36497465) | |
| 353-611, gnl|canFam2|chr10 (36497742-36497455) | |
| 353-611, gnl|dasNov1|scaffold_17611 (15373-15084) | |
| 353-611, gnl|dasNov1|scaffold_82764 (1840-2055) | |
| 353-611, gnl|echTel1|scaffold_310732 (84882-85184) | |
| 353-611, gnl|echTel1|scaffold_322000 (60259-60454) | |
| 353-611, gnl|hg17|chr1 (200884133-200884309) | |
| 353-611, gnl|hg17|chr12 (103890655-103890943) | |
| 353-611, gnl|Hg17|chr12 (103890722-103890984) | |
| 353-611, gnl|loxAfr1|scaffold_125382 (4439-4224) | |
| 353-611, gnl|loxAfr1|scaffold_125382 (4506-4219) | |
| 353-611, gnl|mm7|chr10 (82907213-82907425) | |
| 353-611, gnl|mm7|chr10 (82907144-82907430) | |
| 353-611, gnl|Mm7|chr10 (82907212-82907455) | |
| 353-611, gnl|oryCun1|scaffold_172451 (4760-5047) | |
| 353-611, gnl|oryCun1|scaffold_69103 (1037-1251) | |
| 353-611, gnl|panTro1|chr1 (183824635-183824811) | |
| 353-611, gnl|panTro1|chr10 (106376973-106377261) | |
| 353-611, gnl|rheMac2|chr1 (166250289-166250107) | |
| 353-611, gnl|rheMac2|chr11 (106110310-106110598) | |
| 353-611, gnl|rn3|chr7 (22520156-22519941) | |
| 353-611, gnl|rn3|chr7 (22520220-22519936) | |
| 395-593, gnl|bosTau2|chr23 (5423675-5423869) | |
| 395-593, gnl|Hg17|chr12 (103890776-103890970) | |
| 626-792, gnl|bosTau2|chr5 (64714700-64714533) | |
| 626-792, gnl|Hg17|chr12 (103891008-103900431) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-131, gnl|bosTau2|chr5 (64722554-64722431) | |
| 8-131, gnl|dasNov1|scaffold_82764 (1506-1620) | |
| 8-131, gnl|Hg17|chr12 (103882591-103882714) | |
| 8-131, gnl|hg17|chr6 (75569745-75569879) | |
| 8-131, gnl|Mm7|chr10 (82901761-82901884) | |
| 8-131, gnl|panTro1|chr5 (76914047-76914181) | |
| 8-131, gnl|rheMac2|chr4 (70940405-70940539) | |
| 353-611, gnl|bosTau2|chr5 (64715118-64714846) | |
| 353-611, gnl|canFam2|chr10 (36497676-36497465) | |
| 353-611, gnl|canFam2|chr10 (36497742-36497455) | |
| 353-611, gnl|dasNov1|scaffold_17611 (15373-15084) | |
| 353-611, gnl|dasNov1|scaffold_82764 (1840-2055) | |
| 353-611, gnl|echTel1|scaffold_310732 (84882-85184) | |
| 353-611, gnl|echTel1|scaffold_322000 (60259-60454) | |
| 353-611, gnl|hg17|chr1 (200884133-200884309) | |
| 353-611, gnl|hg17|chr12 (103890655-103890943) | |
| 353-611, gnl|Hg17|chr12 (103890722-103890984) | |
| 353-611, gnl|loxAfr1|scaffold_125382 (4439-4224) | |
| 353-611, gnl|loxAfr1|scaffold_125382 (4506-4219) | |
| 353-611, gnl|mm7|chr10 (82907213-82907425) | |
| 353-611, gnl|mm7|chr10 (82907144-82907430) | |
| 353-611, gnl|Mm7|chr10 (82907212-82907455) | |
| 353-611, gnl|oryCun1|scaffold_172451 (4760-5047) | |
| 353-611, gnl|oryCun1|scaffold_69103 (1037-1251) | |
| 353-611, gnl|panTro1|chr1 (183824635-183824811) | |
| 353-611, gnl|panTro1|chr10 (106376973-106377261) | |
| 353-611, gnl|rheMac2|chr1 (166250289-166250107) | |
| 353-611, gnl|rheMac2|chr11 (106110310-106110598) | |
| 353-611, gnl|rn3|chr7 (22520156-22519941) | |
| 353-611, gnl|rn3|chr7 (22520220-22519936) | |
| 395-593, gnl|bosTau2|chr23 (5423675-5423869) | |
| 395-593, gnl|Hg17|chr12 (103890776-103890970) | |
| 626-792, gnl|bosTau2|chr5 (64714700-64714533) | |
| 626-792, gnl|Hg17|chr12 (103891008-103900431) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| cte (0.58548) | |
| sag (0.36543) | |
| cag (0.302389) | |
| jej (0.296765) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| tes (0.207814) | |
| rec (0.17307) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| spc (0.113366) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| sag (0.36543) | |
| cag (0.302389) | |
| jej (0.296765) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| tes (0.207814) | |
| rec (0.17307) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| spc (0.113366) |