Non-Coding RNA Search

Ss1.1-Pig4-TMW8028K14.5

Sequence:


               
               GGTCCTTCTGTGGCATCTTCTACAAATCCATTTCAGACCAATGCCAGAGGAGCAACAGCA
GCGACCTTTGGCACTGCATCAATGAGCATGCCTGCAGGGTTTGGGACTCCTGCTCCCTAC
AGTCTTCCCACCAGCTTTAGCGGCAGCTTCCAGCAGCCTGCCTTCCCAGCCCAAGCAGCT
TTCCCTCAGCAGACGGCTTTTTCTCAACAGCCCAATGGTGCAGGTTTTGCAGCATTTGGA
CAAACAAAGCCAGTGGTAACTCCTTTTGGTCAAGTTGCAGCTGCTGGAGTATCTAGTAAT
CCTTTTATGACTGGTGCACCGACAGGACAATTTCCAACAGGAAGCTCATCAACCAATCCT
TTCTTATAGCCTTATATAGACACTTTACTGGAACGAACTTTTACGTGGTCACAGTACATC
TCTCCGCCTCTTGCACTGTTGTCTTGTTTCACTGATCTTAGCTTTAAACACAAGAGAAGT
CTTTAAAAAGCCTGCATTGTGTATTAAATACCAGGTAATATGTGCAAAACAGAGGGCTCC
AGTAACAACTTTTAACCTGTGAATTGGCAAAAAAAAGTAGCCGTATCATGTATATTAAAA
ATTGGCTAATATTAAGTTATTGCAGATACCACATTCATTATGCTGCAGTACTGTACATAT
TTTTCTTAGAAATTAGCTATTTGTGCATATCAGTATTTGTAACTTTAACACATTGTTATG
TGAGAAATGTTACTGGGGAAATAGATCAGCCACTTTTGAGGTGCTGTCATATATCTTGGA
ATGAATGACCTAAAATCACTTTAACCATTGCTACTGGAAAGTTACAAAGTCAAAATTGGA
AGGTTTTATTCATTCTTGAATTTTTCCTTTCTAAAGAGCTCTTCTATTTATACATGCCTA
AATCTTTAAAAATGTAGAGGGATACCTGTCTGCATAATAAAGCTGATCATGTTTTGCTAC
AGTTTGCAGGTGAAAAAAAATAAATATTAGAAAATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCCTTCTGTGGCATCTTCTACAAATCCATTTCAGACCAATGCCAGAGGAGCAACAGCA
GCGACCTTTGGCACTGCATCAATGAGCATGCCTGCAGGGTTTGGGACTCCTGCTCCCTAC
AGTCTTCCCACCAGCTTTAGCGGCAGCTTCCAGCAGCCTGCCTTCCCAGCCCAAGCAGCT
TTCCCTCAGCAGACGGCTTTTTCTCAACAGCCCAATGGTGCAGGTTTTGCAGCATTTGGA
CAAACAAAGCCAGTGGTAACTCCTTTTGGTCAAGTTGCAGCTGCTGGAGTATCTAGTAAT
CCTTTTATGACTGGTGCACCGACAGGACAATTTCCAACAGGAAGCTCATCAACCAATCCT
TTCTTATAGCCTTATATAGACACTTTACTGGAACGAACTTTTACGTGGTCACAGTACATC
TCTCCGCCTCTTGCACTGTTGTCTTGTTTCACTGATCTTAGCTTTAAACACAAGAGAAGT
CTTTAAAAAGCCTGCATTGTGTATTAAATACCAGGTAATATGTGCAAAACAGAGGGCTCC
AGTAACAACTTTTAACCTGTGAATTGGCAAAAAAAAGTAGCCGTATCATGTATATTAAAA
ATTGGCTAATATTAAGTTATTGCAGATACCACATTCATTATGCTGCAGTACTGTACATAT
TTTTCTTAGAAATTAGCTATTTGTGCATATCAGTATTTGTAACTTTAACACATTGTTATG
TGAGAAATGTTACTGGGGAAATAGATCAGCCACTTTTGAGGTGCTGTCATATATCTTGGA
ATGAATGACCTAAAATCACTTTAACCATTGCTACTGGAAAGTTACAAAGTCAAAATTGGA
AGGTTTTATTCATTCTTGAATTTTTCCTTTCTAAAGAGCTCTTCTATTTATACATGCCTA
AATCTTTAAAAATGTAGAGGGATACCTGTCTGCATAATAAAGCTGATCATGTTTTGCTAC
AGTTTGCAGGTGAAAAAAAATAAATATTAGAAAATAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47227955|emb|CAF97584.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47227955|emb|CAF97584.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               739-858, + strand, RNAz p=0.705978

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               739-858, + strand, RNAz p=0.705978

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of X89478, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of X89478, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               53-219, gnl|bosTau2|chr2 (69276962-69277128)
               

               
               53-219, gnl|Hg17|chr2 (228242174-228242340)
               

               
               53-219, gnl|Mm7|chr1 (83102103-83102273)
               


               
               304-996, gnl|bosTau2|chr2 (69278951-69279647)
               

               
               304-996, gnl|Hg17|chr2 (228244652-228245343)
               

               
               304-996, gnl|Mm7|chr1 (83103679-83104358)
               


               
               492-609, gnl|bosTau2|chr15 (31384769-31384652)
               

               
               492-609, gnl|Hg17|chr2 (228244839-228244955)
               

               
               492-609, gnl|Mm7|chr1 (83103866-83103982)
               


               
               614-850, gnl|bosTau2|chr15 (31384425-31384196)
               

               
               614-850, gnl|Hg17|chr2 (228244960-228245196)
               

               
               614-850, gnl|Mm7|chr1 (83103987-83104214)
               


               
               890-994, gnl|bosTau2|chr15 (31383938-31384041)
               

               
               890-994, gnl|Hg17|chr2 (228245236-228245341)
               

               
               890-994, gnl|Mm7|chr1 (83104253-83104356)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-219, gnl|bosTau2|chr2 (69276962-69277128)
               

               
               53-219, gnl|Hg17|chr2 (228242174-228242340)
               

               
               53-219, gnl|Mm7|chr1 (83102103-83102273)
               


               
               304-996, gnl|bosTau2|chr2 (69278951-69279647)
               

               
               304-996, gnl|Hg17|chr2 (228244652-228245343)
               

               
               304-996, gnl|Mm7|chr1 (83103679-83104358)
               


               
               492-609, gnl|bosTau2|chr15 (31384769-31384652)
               

               
               492-609, gnl|Hg17|chr2 (228244839-228244955)
               

               
               492-609, gnl|Mm7|chr1 (83103866-83103982)
               


               
               614-850, gnl|bosTau2|chr15 (31384425-31384196)
               

               
               614-850, gnl|Hg17|chr2 (228244960-228245196)
               

               
               614-850, gnl|Mm7|chr1 (83103987-83104214)
               


               
               890-994, gnl|bosTau2|chr15 (31383938-31384041)
               

               
               890-994, gnl|Hg17|chr2 (228245236-228245341)
               

               
               890-994, gnl|Mm7|chr1 (83104253-83104356)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               sin (0.524843)
               

               
               tes (0.415628)
               

               
               fat (0.294855)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.524843)
               

               
               tes (0.415628)
               

               
               fat (0.294855)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	53-219, gnl\|bosTau2\|chr2 (69276962-69277128)
	53-219, gnl\|Hg17\|chr2 (228242174-228242340)
	53-219, gnl\|Mm7\|chr1 (83102103-83102273)

	304-996, gnl\|bosTau2\|chr2 (69278951-69279647)
	304-996, gnl\|Hg17\|chr2 (228244652-228245343)
	304-996, gnl\|Mm7\|chr1 (83103679-83104358)

	492-609, gnl\|bosTau2\|chr15 (31384769-31384652)
	492-609, gnl\|Hg17\|chr2 (228244839-228244955)
	492-609, gnl\|Mm7\|chr1 (83103866-83103982)

	614-850, gnl\|bosTau2\|chr15 (31384425-31384196)
	614-850, gnl\|Hg17\|chr2 (228244960-228245196)
	614-850, gnl\|Mm7\|chr1 (83103987-83104214)

	890-994, gnl\|bosTau2\|chr15 (31383938-31384041)
	890-994, gnl\|Hg17\|chr2 (228245236-228245341)
	890-994, gnl\|Mm7\|chr1 (83104253-83104356)

	sin (0.524843)
	tes (0.415628)
	fat (0.294855)
	cki (0.165235)
	lin (0.145603)
	spl (0.143184)
	ova (0.129132)
	ese (0.126502)
	tra (0.123092)
	med (0.116252)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)