Ss1.1-Pig4-TMW8028K17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCGTCCTGGAGATAAGTGAGTCCTGGCCGGGAGAGCAGGTGCGGGTGTCCCAGCCAGC TCAGGTGACAGCCCTGTCCACACGCGCCTCAGCTCTGATGTCTGCAGAGGCAGCTGCCTC CATGTGTGACCTGGAGTTTGGGGGCATCAAGGTGAAGGAGCCCAGCAAGGGGGGCAGGTG GCGCGAGGGCTGGTATGAGCGATACCTGCAGCCCTGCCTGGTCGAACTGCTGGGCTCGGC CCTCTTCATCTTCATCGGCTGCCTGTCGGTCATTGAGAATAGGCCGGACACTGGGCTGCT GCAGCCGGCACTGGCCCACGGGCTGGCCCTGGGCCTCGTCATTGCCACGCTGGGGAACAT CAGTGGCGGACACTTCAACCCTGCGGTGTCCCTGGCAGCCATGCTGGTCGGAGGTCTCCA CCTGACGATGCTTCTTCCCTACTGGATCTCCCAGCTGTGCGGGGGGCTGATCGGGGCCGC CTTGGCCAAGGCAGTGAGTCCTGAGGAGAGGTTCTGGAATGCGTCTGGGGCAGCCTTTGT GACGGTCCAGGAGCCGGGGCAGGTGGTAGGGGCAGTGGTGGCAGAGATCATCCTGACGAC ACTGCTGGTGCTGGCCGTGTGCATGGGTGCCATCAACAAGAAGACGCAGGGTCCTCTGGC CCCATTCTCCATCGGCTTCTCTGTCACCGTGGATATCCTGGCGGGCGGTGCTGTGTCTGG AGCCTGCATGAATCCCGCACGAGCCTTTGGACCTGCTGTGGTGGCCAGCTACTGGGACTT CCACTGGATCTACTGGCTGGGCCCGCTCCTGGCCAGCCTGGTTGTAGGAGGGCTCATCAG GTTCTTTATCGGAGATGGGAAAACTCGCCTAATTCTAAAGGGACGGTGAAGCTGAGATGG TGGGATTCCTGCTGCCCCAGGAGCCCTCAGTGGCCCCATCCTGGACTGCAGACAAGACAG CTCTGCCTTTCCTGCTGGGGCAGAGCCCCCGAGGAGCAAGTGACCTGCGTCACCTGACTT GGGCCTGGCCTCTCAGGTGGGCCAGGTTCTTCAACTTCCTTTGTGGTCGTCAGAGACCTC AGCCTGGGGAATGTGTTGCCAGCGCCGCCCAGAAGGAGGTGGCAGCAGCACAGCAGAAGA GCTTTTCTTGACAGGGGAGGTCCCAGGAGCAGAAGAATGGTTGGAAGAGGTGGCTGTTTA TGTATCTCTGTTCATTTCCCTCATCCCCTTTCTCCTTCTCTTGCCCCCCAATACCTCCGT TCTAGAGCGTCTTCTGTGATCTAGTTCCCTGCTTCCTGAGCTGTCAATCTAGCTTTGCAA TAAATAGCCCAGTGTTCCCTTGTGCATCCCCGCTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCGTCCTGGAGATAAGTGAGTCCTGGCCGGGAGAGCAGGTGCGGGTGTCCCAGCCAGC TCAGGTGACAGCCCTGTCCACACGCGCCTCAGCTCTGATGTCTGCAGAGGCAGCTGCCTC CATGTGTGACCTGGAGTTTGGGGGCATCAAGGTGAAGGAGCCCAGCAAGGGGGGCAGGTG GCGCGAGGGCTGGTATGAGCGATACCTGCAGCCCTGCCTGGTCGAACTGCTGGGCTCGGC CCTCTTCATCTTCATCGGCTGCCTGTCGGTCATTGAGAATAGGCCGGACACTGGGCTGCT GCAGCCGGCACTGGCCCACGGGCTGGCCCTGGGCCTCGTCATTGCCACGCTGGGGAACAT CAGTGGCGGACACTTCAACCCTGCGGTGTCCCTGGCAGCCATGCTGGTCGGAGGTCTCCA CCTGACGATGCTTCTTCCCTACTGGATCTCCCAGCTGTGCGGGGGGCTGATCGGGGCCGC CTTGGCCAAGGCAGTGAGTCCTGAGGAGAGGTTCTGGAATGCGTCTGGGGCAGCCTTTGT GACGGTCCAGGAGCCGGGGCAGGTGGTAGGGGCAGTGGTGGCAGAGATCATCCTGACGAC ACTGCTGGTGCTGGCCGTGTGCATGGGTGCCATCAACAAGAAGACGCAGGGTCCTCTGGC CCCATTCTCCATCGGCTTCTCTGTCACCGTGGATATCCTGGCGGGCGGTGCTGTGTCTGG AGCCTGCATGAATCCCGCACGAGCCTTTGGACCTGCTGTGGTGGCCAGCTACTGGGACTT CCACTGGATCTACTGGCTGGGCCCGCTCCTGGCCAGCCTGGTTGTAGGAGGGCTCATCAG GTTCTTTATCGGAGATGGGAAAACTCGCCTAATTCTAAAGGGACGGTGAAGCTGAGATGG TGGGATTCCTGCTGCCCCAGGAGCCCTCAGTGGCCCCATCCTGGACTGCAGACAAGACAG CTCTGCCTTTCCTGCTGGGGCAGAGCCCCCGAGGAGCAAGTGACCTGCGTCACCTGACTT GGGCCTGGCCTCTCAGGTGGGCCAGGTTCTTCAACTTCCTTTGTGGTCGTCAGAGACCTC AGCCTGGGGAATGTGTTGCCAGCGCCGCCCAGAAGGAGGTGGCAGCAGCACAGCAGAAGA GCTTTTCTTGACAGGGGAGGTCCCAGGAGCAGAAGAATGGTTGGAAGAGGTGGCTGTTTA TGTATCTCTGTTCATTTCCCTCATCCCCTTTCTCCTTCTCTTGCCCCCCAATACCTCCGT TCTAGAGCGTCTTCTGTGATCTAGTTCCCTGCTTCCTGAGCTGTCAATCTAGCTTTGCAA TAAATAGCCCAGTGTTCCCTTGTGCATCCCCGCTAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 105-372, gnl|bosTau2|chr25 (22258279-22258012) | |
| 105-372, gnl|Hg17|chr16 (25136015-25136276) | |
| 105-372, gnl|Mm7|chr7 (119565235-119565493) | |
| 489-705, gnl|bosTau2|chr25 (22253015-22252799) | |
| 489-705, gnl|canFam2|chr6 (24007624-24007389) | |
| 489-705, gnl|danRer3|chr12 (15251298-15251076) | |
| 489-705, gnl|dasNov1|scaffold_14665 (2642-2888) | |
| 489-705, gnl|echTel1|scaffold_277965 (85526-85772) | |
| 489-705, gnl|fr1|chrUn (223998217-223998481) | |
| 489-705, gnl|hg17|chr16 (25143171-25143417) | |
| 489-705, gnl|Hg17|chr16 (25143182-25143398) | |
| 489-705, gnl|loxAfr1|scaffold_34449 (21175-21422) | |
| 489-705, gnl|mm7|chr7 (119567761-119568008) | |
| 489-705, gnl|Mm7|chr7 (119567773-119567989) | |
| 489-705, gnl|monDom2|scaffold_49 (2484348-2484582) | |
| 489-705, gnl|oryCun1|scaffold_90360 (3073-2824) | |
| 489-705, gnl|panTro1|chr18_random (12005999-12005753) | |
| 489-705, gnl|rheMac2|chr20 (23699511-23699757) | |
| 489-705, gnl|rn3|chr1 (182474552-182474799) | |
| 489-705, gnl|tetNig1|chr3 (9126722-9126944) | |
| 489-705, gnl|xenTro1|scaffold_12 (2002575-2002351) | |
| 839-1354, gnl|bosTau2|chr25 (22249387-22248889) | |
| 839-1354, gnl|Hg17|chr16 (25147264-25147764) | |
| 839-1354, gnl|Mm7|chr7 (119570072-119570680) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 105-372, gnl|bosTau2|chr25 (22258279-22258012) | |
| 105-372, gnl|Hg17|chr16 (25136015-25136276) | |
| 105-372, gnl|Mm7|chr7 (119565235-119565493) | |
| 489-705, gnl|bosTau2|chr25 (22253015-22252799) | |
| 489-705, gnl|canFam2|chr6 (24007624-24007389) | |
| 489-705, gnl|danRer3|chr12 (15251298-15251076) | |
| 489-705, gnl|dasNov1|scaffold_14665 (2642-2888) | |
| 489-705, gnl|echTel1|scaffold_277965 (85526-85772) | |
| 489-705, gnl|fr1|chrUn (223998217-223998481) | |
| 489-705, gnl|hg17|chr16 (25143171-25143417) | |
| 489-705, gnl|Hg17|chr16 (25143182-25143398) | |
| 489-705, gnl|loxAfr1|scaffold_34449 (21175-21422) | |
| 489-705, gnl|mm7|chr7 (119567761-119568008) | |
| 489-705, gnl|Mm7|chr7 (119567773-119567989) | |
| 489-705, gnl|monDom2|scaffold_49 (2484348-2484582) | |
| 489-705, gnl|oryCun1|scaffold_90360 (3073-2824) | |
| 489-705, gnl|panTro1|chr18_random (12005999-12005753) | |
| 489-705, gnl|rheMac2|chr20 (23699511-23699757) | |
| 489-705, gnl|rn3|chr1 (182474552-182474799) | |
| 489-705, gnl|tetNig1|chr3 (9126722-9126944) | |
| 489-705, gnl|xenTro1|scaffold_12 (2002575-2002351) | |
| 839-1354, gnl|bosTau2|chr25 (22249387-22248889) | |
| 839-1354, gnl|Hg17|chr16 (25147264-25147764) | |
| 839-1354, gnl|Mm7|chr7 (119570072-119570680) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ute (0.663922) | |
| cje (0.330469) | |
| ill (0.175593) | |
| nje (0.16592) | |
| nco (0.161734) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.663922) | |
| cje (0.330469) | |
| ill (0.175593) | |
| nje (0.16592) | |
| nco (0.161734) | |
| jej (0.0989218) | |
| eje (0.0988338) |