Ss1.1-Pig4-TMW8028L03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGAGCGGGCACCCGGGAGCGTAGACGATAATGCAAAGTGCTATGTTCCTGACTGTCCA TCACGACTGCGGACCCATGGACAAGAGCGCAGGCACCGGCCCCAAAAGCGAGGAGAAGCG GGAGAAGATGAAGCGGACCCTATTAAAAGATTGGAAGACCCGTTTGAGCTACTTCTTGCA AAACTCCTCCTCTCCTGGGAAGCCCAAAACCGGCAAGAAAAGCAAACCGCAAACCTTCAT CAAGCCTTCTCCTGAGGAAGCACAGCTGTGGGCAGAAGCATTTGATGAGCTGCTAGCCAG CAAATATGGTCTTGCTGCATTCAGAGCTTTTTTGAAATCTGAATTCTGTGAAGAAAATAT TGAATTCTGGCTGGCCTGTGAAGACTTCAAAAAAACAAAGTCACCCCAAAAGCTGTCCTC CAAAGCCAGGAAAATATACACTGACTTCATAGAAAAAGAAGCTCCAAAAGAGATAAACAT AGACTTTCAAACCAAAACTCTCATTGCCCAAAACATACAAGAGGCTACAAGTGGCTGCTT TACAACTGCCCAGAAAAGGGTGTACAGCTTGATGGAGAACAACTCTTATCCCCGTTTCTT GGAGTCTGAATTCTACCAAGACTTGTGTAGGAAGCCGCCGCAGATCACCACAGAGCCCCA TGCCACATGAGATGGAAACGGGAGCCCCGCAACGAGGACATTGCTTTTTTTCTTTTTGTT TCCTAAGGGGAAAGGCTGTCACCTGCCGAAAAGACTGACCTTGAATTCAGCCTGGGTGTT GAGGAAACATCACTCAGAACTATTGATTCGGAGTTAGTGAGTCAGGAAGCCAGGAGCAGT CTAGGAGAAGCCGGCACTGGGACAGCTTCCAGAACTGATGGAGCACAGGGAGGCAGTGGC CAGGATGTGGCGTGTCTCACGCTGGGAAAGCAGGCACGCGAGACTGAAGGGTGACAGTGT AACGCTATGGTCCAAGAGCACTGAAAATCAATAGGTCTGGGATTATGTGGCCTTAGCTAG CTGGCTGTACATACTTCCCTAACTCAGTCCTTGTCACCCCAGAGTGGTTTAGTGGTAGCT TTTTAGTCCTAGGTGCCATGTTTACTCTGTACAGGGGTCTCGACGTTCTTACGACTACAG GTCCTCAGTACTGGCCCGCGTGACTCTAAACCTGAAACGGTCTGTGTTTAAATGGTCAGT TGCTGTGTGTCACAGGATGAGTGCTGTGGTGTAGAAAGCGACAATGTCCGTGAGGAGTGC CAAAAACTGTCCTGATGGCAGCTACACTTTGACATGGTCTTTGAAGACTTTTAATAAATT TATTTTGATAAATAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGAGCGGGCACCCGGGAGCGTAGACGATAATGCAAAGTGCTATGTTCCTGACTGTCCA TCACGACTGCGGACCCATGGACAAGAGCGCAGGCACCGGCCCCAAAAGCGAGGAGAAGCG GGAGAAGATGAAGCGGACCCTATTAAAAGATTGGAAGACCCGTTTGAGCTACTTCTTGCA AAACTCCTCCTCTCCTGGGAAGCCCAAAACCGGCAAGAAAAGCAAACCGCAAACCTTCAT CAAGCCTTCTCCTGAGGAAGCACAGCTGTGGGCAGAAGCATTTGATGAGCTGCTAGCCAG CAAATATGGTCTTGCTGCATTCAGAGCTTTTTTGAAATCTGAATTCTGTGAAGAAAATAT TGAATTCTGGCTGGCCTGTGAAGACTTCAAAAAAACAAAGTCACCCCAAAAGCTGTCCTC CAAAGCCAGGAAAATATACACTGACTTCATAGAAAAAGAAGCTCCAAAAGAGATAAACAT AGACTTTCAAACCAAAACTCTCATTGCCCAAAACATACAAGAGGCTACAAGTGGCTGCTT TACAACTGCCCAGAAAAGGGTGTACAGCTTGATGGAGAACAACTCTTATCCCCGTTTCTT GGAGTCTGAATTCTACCAAGACTTGTGTAGGAAGCCGCCGCAGATCACCACAGAGCCCCA TGCCACATGAGATGGAAACGGGAGCCCCGCAACGAGGACATTGCTTTTTTTCTTTTTGTT TCCTAAGGGGAAAGGCTGTCACCTGCCGAAAAGACTGACCTTGAATTCAGCCTGGGTGTT GAGGAAACATCACTCAGAACTATTGATTCGGAGTTAGTGAGTCAGGAAGCCAGGAGCAGT CTAGGAGAAGCCGGCACTGGGACAGCTTCCAGAACTGATGGAGCACAGGGAGGCAGTGGC CAGGATGTGGCGTGTCTCACGCTGGGAAAGCAGGCACGCGAGACTGAAGGGTGACAGTGT AACGCTATGGTCCAAGAGCACTGAAAATCAATAGGTCTGGGATTATGTGGCCTTAGCTAG CTGGCTGTACATACTTCCCTAACTCAGTCCTTGTCACCCCAGAGTGGTTTAGTGGTAGCT TTTTAGTCCTAGGTGCCATGTTTACTCTGTACAGGGGTCTCGACGTTCTTACGACTACAG GTCCTCAGTACTGGCCCGCGTGACTCTAAACCTGAAACGGTCTGTGTTTAAATGGTCAGT TGCTGTGTGTCACAGGATGAGTGCTGTGGTGTAGAAAGCGACAATGTCCGTGAGGAGTGC CAAAAACTGTCCTGATGGCAGCTACACTTTGACATGGTCTTTGAAGACTTTTAATAAATT TATTTTGATAAATAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 710-816, - strand, RNAz p=0.570856 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 710-816, - strand, RNAz p=0.570856 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 28-141, gnl|bosTau2|chr16 (5007057-5006944) | |
| 28-141, gnl|Hg17|chr1 (189509855-189509968) | |
| 28-141, gnl|Mm7|chr1 (143930403-143930290) | |
| 142-244, gnl|bosTau2|chr16 (5005922-5005820) | |
| 142-244, gnl|canFam2|chr38 (9202215-9202013) | |
| 142-244, gnl|dasNov1|scaffold_14542 (8059-8250) | |
| 142-244, gnl|echTel1|scaffold_54987 (322-518) | |
| 142-244, gnl|fr1|chrUn (85605120-85605354) | |
| 142-244, gnl|galGal2|chr8 (3507540-3507343) | |
| 142-244, gnl|hg17|chr1 (189510941-189511141) | |
| 142-244, gnl|Hg17|chr1 (189510953-189511055) | |
| 142-244, gnl|loxAfr1|scaffold_102683 (3565-3375) | |
| 142-244, gnl|mm7|chr1 (143929352-143929140) | |
| 142-244, gnl|Mm7|chr1 (143929334-143929232) | |
| 142-244, gnl|monDom2|scaffold_16 (49959935-49960149) | |
| 142-244, gnl|oryCun1|scaffold_176651 (42334-42168) | |
| 142-244, gnl|panTro1|chr1 (172092190-172092390) | |
| 142-244, gnl|rheMac2|chr1 (177797151-177796946) | |
| 142-244, gnl|rn3|chr13 (57907411-57907200) | |
| 142-244, gnl|xenTro1|scaffold_349 (557989-558203) | |
| 471-1335, gnl|bosTau2|chr16 (5004639-5003775) | |
| 471-1335, gnl|Hg17|chr1 (189512187-189513055) | |
| 471-1335, gnl|Mm7|chr1 (143928157-143927281) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 28-141, gnl|bosTau2|chr16 (5007057-5006944) | |
| 28-141, gnl|Hg17|chr1 (189509855-189509968) | |
| 28-141, gnl|Mm7|chr1 (143930403-143930290) | |
| 142-244, gnl|bosTau2|chr16 (5005922-5005820) | |
| 142-244, gnl|canFam2|chr38 (9202215-9202013) | |
| 142-244, gnl|dasNov1|scaffold_14542 (8059-8250) | |
| 142-244, gnl|echTel1|scaffold_54987 (322-518) | |
| 142-244, gnl|fr1|chrUn (85605120-85605354) | |
| 142-244, gnl|galGal2|chr8 (3507540-3507343) | |
| 142-244, gnl|hg17|chr1 (189510941-189511141) | |
| 142-244, gnl|Hg17|chr1 (189510953-189511055) | |
| 142-244, gnl|loxAfr1|scaffold_102683 (3565-3375) | |
| 142-244, gnl|mm7|chr1 (143929352-143929140) | |
| 142-244, gnl|Mm7|chr1 (143929334-143929232) | |
| 142-244, gnl|monDom2|scaffold_16 (49959935-49960149) | |
| 142-244, gnl|oryCun1|scaffold_176651 (42334-42168) | |
| 142-244, gnl|panTro1|chr1 (172092190-172092390) | |
| 142-244, gnl|rheMac2|chr1 (177797151-177796946) | |
| 142-244, gnl|rn3|chr13 (57907411-57907200) | |
| 142-244, gnl|xenTro1|scaffold_349 (557989-558203) | |
| 471-1335, gnl|bosTau2|chr16 (5004639-5003775) | |
| 471-1335, gnl|Hg17|chr1 (189512187-189513055) | |
| 471-1335, gnl|Mm7|chr1 (143928157-143927281) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| cut (2.71878) | |
| sug (1.4002) | |
| cbl (0.918379) | |
| pgl (0.829384) | |
| pla (0.66836) | |
| bla (0.621736) | |
| spl (0.429553) | |
| lun (0.300978) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| mgp (0.230681) | |
| jej (0.197844) | |
| sto (0.179824) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| liv (0.146284) | |
| csk (0.140746) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (2.71878) | |
| sug (1.4002) | |
| cbl (0.918379) | |
| pgl (0.829384) | |
| pla (0.66836) | |
| bla (0.621736) | |
| spl (0.429553) | |
| lun (0.300978) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| mgp (0.230681) | |
| jej (0.197844) | |
| sto (0.179824) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| liv (0.146284) | |
| csk (0.140746) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) |