Non-Coding RNA Search

Ss1.1-Pig4-TMW8028L05.3

Sequence:


               
               TGAAGCACATACTTGTGTATTTAGATAGAAATTTGGCTTAATTTATAATCAATATAAAAT
ACTAATGCAGTTCCACAGCATTCTTATGAAGAGGACTTTAGGCTTAGGGTTAAGTGGTTA
GTGACATTTTATTGAAACCACTAAGAGATACTGTTTAAAGAACCTTGCAGGTTACTCTCA
GTATATAATACTCTTTGTAACATTTCTGTTCATAACTGGGCATAAATTTCATTTTTTTCA
TCATATGCAGTGTGGATATATACAGCTTAATGCAGCCCAATTGCTACCATTTGGATACTT
AGACACTTTGAGCAAAATTGTGGCAGTTTTTGCACACCTTTGCAATAGAAATACCTGGTA
CTCTTAATGTATCTTGTATGTTGTTGTTGCCATATTAGAAGAAAAGTGTAAAAGTAGGTA
ATTAAGTATACTGACAGCACCAAATAAGATATATAAAACTGCAAAATAAAATTCCAGTAG
TTTGTAAGTATTACCAAAAAAGTCACCTTTGACTAAGGGGAAGTTTGCATCCCACTGAAT
CTTGGTGCCTTTGGAATAGACTGGATTTTAAGGGCCTACTCATTTGAGGATTTTGCTGTA
TTGTTTTCCATAATGTCCTCTTTAGCCACCTTGGATTATGTAGAAAAACACAGGATAGCT
AAACATAAATACGATTAACAACGATAATGCTGAAAAAGTATTAGCCTACCAAAGACACAC
TCAGGCTTTAGTAACCTCAGTTTTTAACACACATGTATCTTCTCCAGTCATGAAATCAAA
GCAAGGTGCAGAGTTTGTACCGAGTACTAAGTAGGGGTCCACATGTGGCTGGCTTTATTT
TCCTTTGCTTTTGTTTATGGAAGATGTTCAGCTGACATAAACAGAAGTTGGCCAAAATAC
TGCCTGTGCCGTTAACTTCCTATATAATTCACTTAAATAAAACAGGCTAACCTCCGTGAT
AGCAGTTAAAGTGTCCCATCTTCAATGTTTCTTTTAAGTATTACCATTATGGTGCTACTG
AGCGTTTTCTTTTGGTAAAAAGAAAAATGCCATGGGCTGCAGTCTTCTTTCATCACTTTT
TCTCACCAGGCCCATTAATATGCTTATAACACTAGTGCCAGTTATTTTATTTGATAATGC
TTATTATGGTATTTGTATATTTGTTTGCATTCCAGTTTTGTTCAATAGTGAGTGTGTAAA
CTGCATACATGAAATAAATGTAAATACTAATGTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGCACATACTTGTGTATTTAGATAGAAATTTGGCTTAATTTATAATCAATATAAAAT
ACTAATGCAGTTCCACAGCATTCTTATGAAGAGGACTTTAGGCTTAGGGTTAAGTGGTTA
GTGACATTTTATTGAAACCACTAAGAGATACTGTTTAAAGAACCTTGCAGGTTACTCTCA
GTATATAATACTCTTTGTAACATTTCTGTTCATAACTGGGCATAAATTTCATTTTTTTCA
TCATATGCAGTGTGGATATATACAGCTTAATGCAGCCCAATTGCTACCATTTGGATACTT
AGACACTTTGAGCAAAATTGTGGCAGTTTTTGCACACCTTTGCAATAGAAATACCTGGTA
CTCTTAATGTATCTTGTATGTTGTTGTTGCCATATTAGAAGAAAAGTGTAAAAGTAGGTA
ATTAAGTATACTGACAGCACCAAATAAGATATATAAAACTGCAAAATAAAATTCCAGTAG
TTTGTAAGTATTACCAAAAAAGTCACCTTTGACTAAGGGGAAGTTTGCATCCCACTGAAT
CTTGGTGCCTTTGGAATAGACTGGATTTTAAGGGCCTACTCATTTGAGGATTTTGCTGTA
TTGTTTTCCATAATGTCCTCTTTAGCCACCTTGGATTATGTAGAAAAACACAGGATAGCT
AAACATAAATACGATTAACAACGATAATGCTGAAAAAGTATTAGCCTACCAAAGACACAC
TCAGGCTTTAGTAACCTCAGTTTTTAACACACATGTATCTTCTCCAGTCATGAAATCAAA
GCAAGGTGCAGAGTTTGTACCGAGTACTAAGTAGGGGTCCACATGTGGCTGGCTTTATTT
TCCTTTGCTTTTGTTTATGGAAGATGTTCAGCTGACATAAACAGAAGTTGGCCAAAATAC
TGCCTGTGCCGTTAACTTCCTATATAATTCACTTAAATAAAACAGGCTAACCTCCGTGAT
AGCAGTTAAAGTGTCCCATCTTCAATGTTTCTTTTAAGTATTACCATTATGGTGCTACTG
AGCGTTTTCTTTTGGTAAAAAGAAAAATGCCATGGGCTGCAGTCTTCTTTCATCACTTTT
TCTCACCAGGCCCATTAATATGCTTATAACACTAGTGCCAGTTATTTTATTTGATAATGC
TTATTATGGTATTTGTATATTTGTTTGCATTCCAGTTTTGTTCAATAGTGAGTGTGTAAA
CTGCATACATGAAATAAATGTAAATACTAATGTAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               813-932, - strand, RNAz p=0.680978
               

               
               1011-1124, + strand, RNAz p=0.520636

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               813-932, - strand, RNAz p=0.680978
               

               
               1011-1124, + strand, RNAz p=0.520636

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               850-936, + strand, RNAmicro p=0.989834

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               850-936, + strand, RNAmicro p=0.989834

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_183419, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_183419, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1234, gnl|bosTau2|chr14 (38059071-38057836)
               

               
               1-1234, gnl|Hg17|chr8 (101339691-101338471)
               

               
               1-1234, gnl|Mm7|chr15 (36350441-36349268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1234, gnl|bosTau2|chr14 (38059071-38057836)
               

               
               1-1234, gnl|Hg17|chr8 (101339691-101338471)
               

               
               1-1234, gnl|Mm7|chr15 (36350441-36349268)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               tes (0.415628)
               

               
               aor (0.390549)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               aor (0.390549)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

	813-932, - strand, RNAz p=0.680978
	1011-1124, + strand, RNAz p=0.520636

	1-1234, gnl\|bosTau2\|chr14 (38059071-38057836)
	1-1234, gnl\|Hg17\|chr8 (101339691-101338471)
	1-1234, gnl\|Mm7\|chr15 (36350441-36349268)

	tes (0.415628)
	aor (0.390549)
	gul (0.355177)
	vin (0.332557)
	tbr (0.308356)
	fce (0.271592)
	ova (0.258264)
	tra (0.246184)
	mgm (0.180343)
	fty (0.17584)
	fbs (0.175346)
	mga (0.160205)
	fco (0.157208)
	isp (0.150376)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	pty (0.142714)
	nca (0.136874)
	kid (0.129735)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	eru (0.120048)