Non-Coding RNA Search

Ss1.1-Pig4-TMW8028L08.5

Sequence:


               
               GATGGTGCCTACTACCAGCTCTTTGTGCGAGGTGGCCAACTCCAGCCTGTCCTAAGGCAG
AAGTCCTGTCGAGGCATGAACTGGGTGGCTGGGCTCCGTATGGTGACTGATGGGAGCATG
GTCATCCTGGGTTTCCACGCCAATGAGTTTGTGGTGTGGAGCCCCCGGTCTCATGAGAAG
CTGCATATCATCAACTGTGGTGGAGGGCATCGCTCCTGGGCCTTCTCTGATACCGAGTCT
GCTATGGCCTTCGCCTACCTCAAGGATGGGGATGTCATGCTGTACCGAGCTTTGGGTGGC
TGCACCCGGCCACATGTGATTCTCCGGGAGAGCCTGCATGGCCGTGAGATCACTTGTGTA
AAGCGTGTGGGTACCATCACCCTGGGGCCTGAATTCGGGGTGCCCAGCTTCATTCAGCCT
GATTATCTAGAGCCTGGAAGTGAGGGGCCTGGCCTAATTGACATCGTGATCACGTGCAGT
GAAGACACTACCGTCTGTGTCCTGGCACTCCCCACAGCCACAGGCTCAGCCCATGCGCTT
ACAGCTGTTTGTAACCATATCTCCTCGGTACGTGCAGTGGCTGTCTGGGGCACTGGCACC
CCAGGTGGCCCACAGGATCCTCAGCCTGGCCTGACTGCCCATGTGGTGTCTGCGGGGGGC
CGGGCTGAGATGCACTGCTTCACCCTCATGGTCACCCCAGACCCCAGCACCCCAAGTCAC
CTTGCCTGTCATGTCATGCACCTTTCATCCCACCGGCTGGATGAGTATTGGGACCGGCAG
CGAAATCGGCACCGGATGATCAAGGTGGATCCAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGTGCCTACTACCAGCTCTTTGTGCGAGGTGGCCAACTCCAGCCTGTCCTAAGGCAG
AAGTCCTGTCGAGGCATGAACTGGGTGGCTGGGCTCCGTATGGTGACTGATGGGAGCATG
GTCATCCTGGGTTTCCACGCCAATGAGTTTGTGGTGTGGAGCCCCCGGTCTCATGAGAAG
CTGCATATCATCAACTGTGGTGGAGGGCATCGCTCCTGGGCCTTCTCTGATACCGAGTCT
GCTATGGCCTTCGCCTACCTCAAGGATGGGGATGTCATGCTGTACCGAGCTTTGGGTGGC
TGCACCCGGCCACATGTGATTCTCCGGGAGAGCCTGCATGGCCGTGAGATCACTTGTGTA
AAGCGTGTGGGTACCATCACCCTGGGGCCTGAATTCGGGGTGCCCAGCTTCATTCAGCCT
GATTATCTAGAGCCTGGAAGTGAGGGGCCTGGCCTAATTGACATCGTGATCACGTGCAGT
GAAGACACTACCGTCTGTGTCCTGGCACTCCCCACAGCCACAGGCTCAGCCCATGCGCTT
ACAGCTGTTTGTAACCATATCTCCTCGGTACGTGCAGTGGCTGTCTGGGGCACTGGCACC
CCAGGTGGCCCACAGGATCCTCAGCCTGGCCTGACTGCCCATGTGGTGTCTGCGGGGGGC
CGGGCTGAGATGCACTGCTTCACCCTCATGGTCACCCCAGACCCCAGCACCCCAAGTCAC
CTTGCCTGTCATGTCATGCACCTTTCATCCCACCGGCTGGATGAGTATTGGGACCGGCAG
CGAAATCGGCACCGGATGATCAAGGTGGATCCAGAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               280-399, - strand, RNAz p=0.621614
               

               
               438-541, - strand, RNAz p=0.938508

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-399, - strand, RNAz p=0.621614
               

               
               438-541, - strand, RNAz p=0.938508

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               439-571, - strand, RNAmicro p=0.921723

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               439-571, - strand, RNAmicro p=0.921723

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-816, gnl|bosTau2|chr22 (40009017-40009850)
               

               
               1-816, gnl|Hg17|chr3 (49025733-49026548)
               

               
               1-816, gnl|Mm7|chr9 (108287686-108286871)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr22 (40009017-40009850)
               

               
               1-816, gnl|Hg17|chr3 (49025733-49026548)
               

               
               1-816, gnl|Mm7|chr9 (108287686-108286871)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               eep (0.245128)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eep (0.245128)
               

               
               ese (0.126502)

	280-399, - strand, RNAz p=0.621614
	438-541, - strand, RNAz p=0.938508

	1-816, gnl\|bosTau2\|chr22 (40009017-40009850)
	1-816, gnl\|Hg17\|chr3 (49025733-49026548)
	1-816, gnl\|Mm7\|chr9 (108287686-108286871)