Non-Coding RNA Search

Ss1.1-Pig4-TMW8028L09.5

Sequence:


               
               TCTGGATGTTCTACTATTTGGTGAACTAGCTAGTTCTGCTGAAAAGCCACAATCTAAAGA
AGGACTTTTAAGTGGACAGGACACAGCCGCTCAGTTTGGACCACAGAAGGAGCCAGTAAG
ACAGCAGATTCATCGTATGTTCCTCTTAAGAGTGAAGCTCATGCACTTTGTGAACAGTTT
ACACAACTACATCATGACCAGGATTCTTCACAGTACAGGGTTGGAGTTTCAACACCAAGT
TGAGGAAGCCAAGGATTTAGATCAGTTGATTAAAATTCACTATAGATACTTGTCAACCAT
CCATGATCGATGTCTGCTGAGAGAAAAGGTCAGTTTTGTGAAGGAAGCCATCATGAAGGT
GTTGAACTTGGCCCTCATGTTCGCAGATGGTTGGCAGGCCGGCCTAGGGGCATGGCAAAT
GGAGTCTATAGAGAAAATGGAGTCTGATTTTAAAAACTGCCATATGTTTCTTGTAACCAT
TTTAAACAAAGCTGTCTGTAGAGGATCTTTTCCCCATTTGGAATCTCTAGCGCTGTCACT
CATGGCTGGCATGGAACAAAGTTAAATATCTTCAGTGCAGTAAATACTTCAGATTTAATC
GTCATACATTTCCACCACATGCAGCTGAGAAACAGGAATCTATTTTGGACCGTTTTAAAA
CCTCTTGTCTATTATCTAGACAAGTGGATTTTGTTTCCTCTGGGGATTATTGGTTAGTGT
ATAGGATCATGTGTATAAAATTGTATCAATAATGTAAAAAATATATAGCATATTTACACT
TATATCCTAATGTAAGCTATAGATTTATGGTATTGATATCTTTAAAAATGTAATTATTAA
TATTATAGATAAATTAAAGCACTTATTTTATTCCCTTTTTGCTTAGCCATAGTTTTTTAT
GTAGAGTTTTACATGCTGTCTTCCATCAAGGTTGTCTGAAAAATGTATTTTTATGTGCCT
GCAAAGTTCCAAAATGGAAAATAGCATCAATCAATGTCAATAAATATAAAAGCCAGCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGGATGTTCTACTATTTGGTGAACTAGCTAGTTCTGCTGAAAAGCCACAATCTAAAGA
AGGACTTTTAAGTGGACAGGACACAGCCGCTCAGTTTGGACCACAGAAGGAGCCAGTAAG
ACAGCAGATTCATCGTATGTTCCTCTTAAGAGTGAAGCTCATGCACTTTGTGAACAGTTT
ACACAACTACATCATGACCAGGATTCTTCACAGTACAGGGTTGGAGTTTCAACACCAAGT
TGAGGAAGCCAAGGATTTAGATCAGTTGATTAAAATTCACTATAGATACTTGTCAACCAT
CCATGATCGATGTCTGCTGAGAGAAAAGGTCAGTTTTGTGAAGGAAGCCATCATGAAGGT
GTTGAACTTGGCCCTCATGTTCGCAGATGGTTGGCAGGCCGGCCTAGGGGCATGGCAAAT
GGAGTCTATAGAGAAAATGGAGTCTGATTTTAAAAACTGCCATATGTTTCTTGTAACCAT
TTTAAACAAAGCTGTCTGTAGAGGATCTTTTCCCCATTTGGAATCTCTAGCGCTGTCACT
CATGGCTGGCATGGAACAAAGTTAAATATCTTCAGTGCAGTAAATACTTCAGATTTAATC
GTCATACATTTCCACCACATGCAGCTGAGAAACAGGAATCTATTTTGGACCGTTTTAAAA
CCTCTTGTCTATTATCTAGACAAGTGGATTTTGTTTCCTCTGGGGATTATTGGTTAGTGT
ATAGGATCATGTGTATAAAATTGTATCAATAATGTAAAAAATATATAGCATATTTACACT
TATATCCTAATGTAAGCTATAGATTTATGGTATTGATATCTTTAAAAATGTAATTATTAA
TATTATAGATAAATTAAAGCACTTATTTTATTCCCTTTTTGCTTAGCCATAGTTTTTTAT
GTAGAGTTTTACATGCTGTCTTCCATCAAGGTTGTCTGAAAAATGTATTTTTATGTGCCT
GCAAAGTTCCAAAATGGAAAATAGCATCAATCAATGTCAATAAATATAAAAGCCAGCTTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61883813|ref|XP_601572.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61883813|ref|XP_601572.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               23-236, gnl|bosTau2|chr2 (800199-800412)
               

               
               23-236, gnl|Hg17|chr15 (20418898-20419113)
               

               
               23-236, gnl|Mm7|chr7 (52066012-52066229)
               


               
               510-1018, gnl|bosTau2|chr2 (806638-807178)
               

               
               510-1018, gnl|Hg17|chr15 (20424634-20426154)
               

               
               510-1018, gnl|Mm7|chr7 (52073326-52073869)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-236, gnl|bosTau2|chr2 (800199-800412)
               

               
               23-236, gnl|Hg17|chr15 (20418898-20419113)
               

               
               23-236, gnl|Mm7|chr7 (52066012-52066229)
               


               
               510-1018, gnl|bosTau2|chr2 (806638-807178)
               

               
               510-1018, gnl|Hg17|chr15 (20424634-20426154)
               

               
               510-1018, gnl|Mm7|chr7 (52073326-52073869)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               thg (0.253582)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               thg (0.253582)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	23-236, gnl\|bosTau2\|chr2 (800199-800412)
	23-236, gnl\|Hg17\|chr15 (20418898-20419113)
	23-236, gnl\|Mm7\|chr7 (52066012-52066229)

	510-1018, gnl\|bosTau2\|chr2 (806638-807178)
	510-1018, gnl\|Hg17\|chr15 (20424634-20426154)
	510-1018, gnl\|Mm7\|chr7 (52073326-52073869)

	elu (0.385356)
	thg (0.253582)
	gul (0.177588)
	nje (0.16592)
	nco (0.161734)
	isp (0.150376)
	hyp (0.142837)
	spc (0.113366)
	ldo (0.0970026)