Ss1.1-Pig4-TMW8028L13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGGACTCTATGTTCTTCCGTGCTTGAAAGTCGGGGGCCGAGCTGGAGGCCGACTCTCC CGGAGCGCGAGACTTCTATTTCGAAGGGTGCACCGGTTCCGTGCCCTAAAGCTGATGCGG CTTGGTGCGAGATCGTCGCTAGGAGGCCGGCCTGCAGTGTGACCTGCCGTCTGCCCGGCC CCTCTCCCGTTTCGACGTGGGCAAGGGGTGCTGAGGCTCGAGCAGCATGACGACGGAGAC TTTCGTGAAGGATATCAAGCCTGGGCTCAAGAACCTGAACCTCATCTTCATTGTGCTGGA GACAGGGCGAGTGACTAAAACAAAGGACGGGCACGAGGTTCGGACCTGCAAAGTGGCAGA CAAAACTGGGAGCATCAATATCTCTGTCTGGGACGACGTGGGCAACTTGATCCAGCCTGG GGACATTATCCGGCTCACCAAAGGGTACGCTTCAGTGTTCAAAGGTTGTCTGACACTGTA CACTGGCCGTGGGGGTGACCTTCAGAAGATTGGAGAATTCTGTATGGTTTATTCTGAGGT TCCTAACTTCAGTGAACCAAATCCCCGAAGCCAGCCCAACCACACACCTGCCGGCCCTCC GGGCCCCTCCAGCAACCCTGTCAGTAACGGCAAAGAAACCCGGAGGAGCAGCAAGAGATA GCAGGACCTTCTTCCTCCCTTCTTGCCACCCACCATAACCCAGGTGTCCGCTAGAGAACA CAGCTTCCTACTGGACTGCTGGCTTTGGGGGGGCAGGGGAGTCATAGGAGTGTTTTAGCC ACTAATCTTCACTGGAGGGGTGGTAGGCGGTGGCCTTATCCACCCTAAGCCCATATTCCC CTCTTGTCCAGCTGAAGCTGCCTACTTCCTGGGATTCAGGGCCCTCTCTGCCTGCCCTCC TTCCTCTTTAGAAACAACAGTTACAGTCTGTTTCATGTGTGTGATGCGGGAACCTAATTG CATCCCTCCTTCCTAATAAATGTCACTACTCTGTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGGACTCTATGTTCTTCCGTGCTTGAAAGTCGGGGGCCGAGCTGGAGGCCGACTCTCC CGGAGCGCGAGACTTCTATTTCGAAGGGTGCACCGGTTCCGTGCCCTAAAGCTGATGCGG CTTGGTGCGAGATCGTCGCTAGGAGGCCGGCCTGCAGTGTGACCTGCCGTCTGCCCGGCC CCTCTCCCGTTTCGACGTGGGCAAGGGGTGCTGAGGCTCGAGCAGCATGACGACGGAGAC TTTCGTGAAGGATATCAAGCCTGGGCTCAAGAACCTGAACCTCATCTTCATTGTGCTGGA GACAGGGCGAGTGACTAAAACAAAGGACGGGCACGAGGTTCGGACCTGCAAAGTGGCAGA CAAAACTGGGAGCATCAATATCTCTGTCTGGGACGACGTGGGCAACTTGATCCAGCCTGG GGACATTATCCGGCTCACCAAAGGGTACGCTTCAGTGTTCAAAGGTTGTCTGACACTGTA CACTGGCCGTGGGGGTGACCTTCAGAAGATTGGAGAATTCTGTATGGTTTATTCTGAGGT TCCTAACTTCAGTGAACCAAATCCCCGAAGCCAGCCCAACCACACACCTGCCGGCCCTCC GGGCCCCTCCAGCAACCCTGTCAGTAACGGCAAAGAAACCCGGAGGAGCAGCAAGAGATA GCAGGACCTTCTTCCTCCCTTCTTGCCACCCACCATAACCCAGGTGTCCGCTAGAGAACA CAGCTTCCTACTGGACTGCTGGCTTTGGGGGGGCAGGGGAGTCATAGGAGTGTTTTAGCC ACTAATCTTCACTGGAGGGGTGGTAGGCGGTGGCCTTATCCACCCTAAGCCCATATTCCC CTCTTGTCCAGCTGAAGCTGCCTACTTCCTGGGATTCAGGGCCCTCTCTGCCTGCCCTCC TTCCTCTTTAGAAACAACAGTTACAGTCTGTTTCATGTGTGTGATGCGGGAACCTAATTG CATCCCTCCTTCCTAATAAATGTCACTACTCTGTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 751-904, - strand, RNAz p=0.644057 | |
| 755-852, - strand, RNAz p=0.584128 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 751-904, - strand, RNAz p=0.644057 | |
| 755-852, - strand, RNAz p=0.584128 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 3-193, gnl|bosTau2|chr5 (33399500-33399313) | |
| 3-193, gnl|canFam2|chr10 (3527764-3528474) | |
| 3-193, gnl|dasNov1|scaffold_26856 (11506-12178) | |
| 3-193, gnl|echTel1|scaffold_298797 (3215-3890) | |
| 3-193, gnl|hg17|chr12 (54901806-54902482) | |
| 3-193, gnl|Hg17|chr12 (54902181-54902350) | |
| 3-193, gnl|mm7|chr10 (127913329-127912660) | |
| 3-193, gnl|Mm7|chr10 (127912973-127912793) | |
| 3-193, gnl|oryCun1|scaffold_183133 (4325-3674) | |
| 3-193, gnl|panTro1|chr10 (56152201-56152877) | |
| 3-193, gnl|rheMac2|chr11 (53291796-53292433) | |
| 3-193, gnl|rn3|chr7 (1700647-1699969) | |
| 303-450, gnl|bosTau2|chr5 (33396859-33396712) | |
| 303-450, gnl|Hg17|chr12 (54905421-54905568) | |
| 303-450, gnl|Mm7|chr10 (127910341-127910189) | |
| 559-995, gnl|bosTau2|chr5 (33393806-33393385) | |
| 559-995, gnl|canFam2|chr10 (3534380-3533969) | |
| 559-995, gnl|dasNov1|scaffold_12794 (53302-52944) | |
| 559-995, gnl|Hg17|chr12 (54909162-54909912) | |
| 559-995, gnl|hg17|chr4 (54634285-54634658) | |
| 559-995, gnl|mm7|chr10 (127902894-127903289) | |
| 559-995, gnl|Mm7|chr10 (127903323-127902890) | |
| 559-995, gnl|monDom2|scaffold_15 (10525960-10526358) | |
| 559-995, gnl|oryCun1|scaffold_178686 (43753-44107) | |
| 559-995, gnl|panTro1|chr3 (92026403-92026030) | |
| 559-995, gnl|rheMac2|chr5 (75470830-75470450) | |
| 559-995, gnl|rn3|chr7 (1693110-1693492) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-193, gnl|bosTau2|chr5 (33399500-33399313) | |
| 3-193, gnl|canFam2|chr10 (3527764-3528474) | |
| 3-193, gnl|dasNov1|scaffold_26856 (11506-12178) | |
| 3-193, gnl|echTel1|scaffold_298797 (3215-3890) | |
| 3-193, gnl|hg17|chr12 (54901806-54902482) | |
| 3-193, gnl|Hg17|chr12 (54902181-54902350) | |
| 3-193, gnl|mm7|chr10 (127913329-127912660) | |
| 3-193, gnl|Mm7|chr10 (127912973-127912793) | |
| 3-193, gnl|oryCun1|scaffold_183133 (4325-3674) | |
| 3-193, gnl|panTro1|chr10 (56152201-56152877) | |
| 3-193, gnl|rheMac2|chr11 (53291796-53292433) | |
| 3-193, gnl|rn3|chr7 (1700647-1699969) | |
| 303-450, gnl|bosTau2|chr5 (33396859-33396712) | |
| 303-450, gnl|Hg17|chr12 (54905421-54905568) | |
| 303-450, gnl|Mm7|chr10 (127910341-127910189) | |
| 559-995, gnl|bosTau2|chr5 (33393806-33393385) | |
| 559-995, gnl|canFam2|chr10 (3534380-3533969) | |
| 559-995, gnl|dasNov1|scaffold_12794 (53302-52944) | |
| 559-995, gnl|Hg17|chr12 (54909162-54909912) | |
| 559-995, gnl|hg17|chr4 (54634285-54634658) | |
| 559-995, gnl|mm7|chr10 (127902894-127903289) | |
| 559-995, gnl|Mm7|chr10 (127903323-127902890) | |
| 559-995, gnl|monDom2|scaffold_15 (10525960-10526358) | |
| 559-995, gnl|oryCun1|scaffold_178686 (43753-44107) | |
| 559-995, gnl|panTro1|chr3 (92026403-92026030) | |
| 559-995, gnl|rheMac2|chr5 (75470830-75470450) | |
| 559-995, gnl|rn3|chr7 (1693110-1693492) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| fce (0.543183) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| jca (0.11396) | |
| ldo (0.0970026) |