Non-Coding RNA Search

Ss1.1-Pig4-TMW8028L15.3

Sequence:


               
               CGCACGTGCACCTCTTGGCACCCGTCTCCGTGGAGCCCACCGATGCCAGCGTGGGGCTGG
CCTGGCTGGCGGTGGGCAGCGTGTGCCTCTTCATCGCTGGCTTCGCCCTGGGCTGGGGGC
CCATCCCCTGGCTCCTCATGTCTGAGATCTTCCCTCTGCACGTCAAGGGCGTGGCCACCG
GCGTCTGTGTCCTCACCAACTGGCTCATGGCCTTTCTGGTGACAAAGGAGTTCAGCAGCC
TCATGGAGGTGCTCAGGCCCTACGGTGCCTTCTGGCTCGCCTCCGCCTTCTGCATCTTCA
GTGTCCTTTTCACTCTGGCCTGTGTCCCTGAAACCAAAGGGAAGACTCTGGAGCAGATCA
CAGCCCATTTTGAGGGGCGATGACAGCCTCTCCCCGAGAGTGGCCACCCCTCTTAGCTGG
ACTTGGCTTTGGGCGGAGGGGATAGAGCTTGCCTGTGACTCCGAACTGAGCCTCAGCTGG
AGCCTGGAATGCCTGCCCGTCTGCAGGGAGCCAGGACTGCAGCCCCTTGGAGCCTTGGCC
TCTGGGGTCCCTCCTTCCTGCCCCCATCTCCACAGCCCAGGGAAGCACGGGGACGAGGCT
TCCAGCCCTGGCGTCCAGTTCCCGCTGCTGCTCTGTGACTCGGGAGGAGGGGACATCTCG
GAGGTGCTTTGCCGCCCTGTGGTCAGCCCCCCATGCGCTGGCTCCATCGTGACACAAAAG
TGACAATGGAAAAGGGGAACTCTTGGTTCCTGGTTTTCTGGAGAAAATGCTTTGGGAGGC
TGGGTAACGGCCCACGGTTTCTCCTCTCACGTGGCTGAGTTCTCAGGAAGGAACTTTGCC
AAATAAAGATTTGCCTTAGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACGTGCACCTCTTGGCACCCGTCTCCGTGGAGCCCACCGATGCCAGCGTGGGGCTGG
CCTGGCTGGCGGTGGGCAGCGTGTGCCTCTTCATCGCTGGCTTCGCCCTGGGCTGGGGGC
CCATCCCCTGGCTCCTCATGTCTGAGATCTTCCCTCTGCACGTCAAGGGCGTGGCCACCG
GCGTCTGTGTCCTCACCAACTGGCTCATGGCCTTTCTGGTGACAAAGGAGTTCAGCAGCC
TCATGGAGGTGCTCAGGCCCTACGGTGCCTTCTGGCTCGCCTCCGCCTTCTGCATCTTCA
GTGTCCTTTTCACTCTGGCCTGTGTCCCTGAAACCAAAGGGAAGACTCTGGAGCAGATCA
CAGCCCATTTTGAGGGGCGATGACAGCCTCTCCCCGAGAGTGGCCACCCCTCTTAGCTGG
ACTTGGCTTTGGGCGGAGGGGATAGAGCTTGCCTGTGACTCCGAACTGAGCCTCAGCTGG
AGCCTGGAATGCCTGCCCGTCTGCAGGGAGCCAGGACTGCAGCCCCTTGGAGCCTTGGCC
TCTGGGGTCCCTCCTTCCTGCCCCCATCTCCACAGCCCAGGGAAGCACGGGGACGAGGCT
TCCAGCCCTGGCGTCCAGTTCCCGCTGCTGCTCTGTGACTCGGGAGGAGGGGACATCTCG
GAGGTGCTTTGCCGCCCTGTGGTCAGCCCCCCATGCGCTGGCTCCATCGTGACACAAAAG
TGACAATGGAAAAGGGGAACTCTTGGTTCCTGGTTTTCTGGAGAAAATGCTTTGGGAGGC
TGGGTAACGGCCCACGGTTTCTCCTCTCACGTGGCTGAGTTCTCAGGAAGGAACTTTGCC
AAATAAAGATTTGCCTTAGAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55665096|emb|CAH72924.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55665096|emb|CAH72924.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               442-632, - strand, RNAz p=0.968008

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               442-632, - strand, RNAz p=0.968008

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               245-863, gnl|bosTau2|chr11 (77786438-77785831)
               

               
               245-863, gnl|Hg17|chr9 (127248944-127249498)
               

               
               245-863, gnl|Mm7|chr2 (32981044-32980510)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               245-863, gnl|bosTau2|chr11 (77786438-77785831)
               

               
               245-863, gnl|Hg17|chr9 (127248944-127249498)
               

               
               245-863, gnl|Mm7|chr2 (32981044-32980510)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               col (0.195008)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	245-863, gnl\|bosTau2\|chr11 (77786438-77785831)
	245-863, gnl\|Hg17\|chr9 (127248944-127249498)
	245-863, gnl\|Mm7\|chr2 (32981044-32980510)

	col (0.195008)
	duo (0.172801)
	fhi (0.169578)
	cly (0.120642)
	jej (0.0989218)