Non-Coding RNA Search

Ss1.1-Pig4-TMW8028L20.3

Sequence:


               
               CATATTTCAGCCGCCGCCGCCGCCGGGAGCCGCGGGCACAGTCCGGCGACGCGGCGAGCA
GCCTGGGCGGCCGCTACGATGTGTGCCGTGCAGGTGAAGCTGGAGCTGGGGCACCGCGCC
CAGGTGAGGAAAAAACCCACCGTGGAGGGCTTCACCCACGACTGGATGGTGTTCGTGCGC
GGCCCGGAGCACAGTAACATACAGCACTTTGTGGAGAAAGTCGTCTTCCACTTGCACGAA
AGCTTCCCTAGGCCAAAAAGAGTGTGCAAAGATCCACCTTACAAAGTAGAAGAATCTGGG
TATGCTGGTTTCATTTTGCCAATTGAGGTTTATTTTAAAAACAAGGAAGAACCTAAGAAA
GTTCGCTTTGATTATGACTTATTCCTGCATCTTGAAGGCCATCCACCAGTGAATCACCTC
CGCTGTGAAAAGCTAACTTTCAACAACCCCACGGAGGAATTTAGAAGAAAGTTGCTGAAG
GCAGGAGGGGACCCTAACAGGAGTATCCATACCAGCAGCAGCAGCAGCAGCAGCAGCTGT
AGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGC
AGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGTTTTTCCAAGCCTCACAAATTA
ATGAAGGAGCACAAGGAAAAACCTTCTAAAGACTCCAGAGAACATAAAAGTGCCTTCAAA
GAACCTTCCAGGGATCACAACAAATCTTCCAAAGAATCCTCTAAGAAACCCAAAGAAAAT
AAACCACTGAAAGAAGAAAAAATCGTTCCTAAGATGGCCTTCAAGGAACCGAAGCCCATG
TCAAAAGAGCCAAAACCAGACAGTAACTTACTCACCATCACCAGTGGACAGCAAGATAAG
AAGGCTCCTAGTAAAAGACCCCCCATTTCAGATTCTGAAGAACTCTCAGCCAAAAAAAGG
AAAAAGAGTAGCTCAGAGGCTTTATTTAAAAGTTTTTCTAGCGCGCCACCACTGATACTC
ACTTGTTCCGCTGATAAAAAACAAATAAAAGATAAATCTCATGTCAAGATGGGAAAGGTC
AAAGTTGAGAGTGAGACGTCAGAGAAGAAGAAATCAGCTTTACCGCCCTTTGATGACATT
GTGGATCCCAATGATTCCGACGTGGAGGAGAATATGTCCTCTAAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATATTTCAGCCGCCGCCGCCGCCGGGAGCCGCGGGCACAGTCCGGCGACGCGGCGAGCA
GCCTGGGCGGCCGCTACGATGTGTGCCGTGCAGGTGAAGCTGGAGCTGGGGCACCGCGCC
CAGGTGAGGAAAAAACCCACCGTGGAGGGCTTCACCCACGACTGGATGGTGTTCGTGCGC
GGCCCGGAGCACAGTAACATACAGCACTTTGTGGAGAAAGTCGTCTTCCACTTGCACGAA
AGCTTCCCTAGGCCAAAAAGAGTGTGCAAAGATCCACCTTACAAAGTAGAAGAATCTGGG
TATGCTGGTTTCATTTTGCCAATTGAGGTTTATTTTAAAAACAAGGAAGAACCTAAGAAA
GTTCGCTTTGATTATGACTTATTCCTGCATCTTGAAGGCCATCCACCAGTGAATCACCTC
CGCTGTGAAAAGCTAACTTTCAACAACCCCACGGAGGAATTTAGAAGAAAGTTGCTGAAG
GCAGGAGGGGACCCTAACAGGAGTATCCATACCAGCAGCAGCAGCAGCAGCAGCAGCTGT
AGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGC
AGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGTTTTTCCAAGCCTCACAAATTA
ATGAAGGAGCACAAGGAAAAACCTTCTAAAGACTCCAGAGAACATAAAAGTGCCTTCAAA
GAACCTTCCAGGGATCACAACAAATCTTCCAAAGAATCCTCTAAGAAACCCAAAGAAAAT
AAACCACTGAAAGAAGAAAAAATCGTTCCTAAGATGGCCTTCAAGGAACCGAAGCCCATG
TCAAAAGAGCCAAAACCAGACAGTAACTTACTCACCATCACCAGTGGACAGCAAGATAAG
AAGGCTCCTAGTAAAAGACCCCCCATTTCAGATTCTGAAGAACTCTCAGCCAAAAAAAGG
AAAAAGAGTAGCTCAGAGGCTTTATTTAAAAGTTTTTCTAGCGCGCCACCACTGATACTC
ACTTGTTCCGCTGATAAAAAACAAATAAAAGATAAATCTCATGTCAAGATGGGAAAGGTC
AAAGTTGAGAGTGAGACGTCAGAGAAGAAGAAATCAGCTTTACCGCCCTTTGATGACATT
GTGGATCCCAATGATTCCGACGTGGAGGAGAATATGTCCTCTAAATCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6MZE2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6MZE2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               883-1002, - strand, RNAz p=0.661822
               

               
               1043-1188, - strand, RNAz p=0.740851

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               883-1002, - strand, RNAz p=0.661822
               

               
               1043-1188, - strand, RNAz p=0.740851

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               81-257, gnl|bosTau2|chr7 (14059257-14059433)
               

               
               81-257, gnl|Hg17|chr19 (6221771-6221595)
               

               
               81-257, gnl|Mm7|chr17 (55138303-55138127)
               


               
               489-1188, gnl|bosTau2|chr18 (53783185-53782480)
               

               
               489-1188, gnl|canFam2|chr11 (43028412-43029017)
               

               
               489-1188, gnl|danRer3|chr23 (8831162-8831723)
               

               
               489-1188, gnl|dasNov1|scaffold_23101 (36760-36155)
               

               
               489-1188, gnl|echTel1|scaffold_292483 (44148-43545)
               

               
               489-1188, gnl|fr1|chrUn (164150122-164150673)
               

               
               489-1188, gnl|galGal2|chrZ (13220747-13220159)
               

               
               489-1188, gnl|hg17|chr9 (20403696-20404299)
               

               
               489-1188, gnl|Hg17|chr9 (20404424-20403722)
               

               
               489-1188, gnl|loxAfr1|scaffold_66694 (6404-7009)
               

               
               489-1188, gnl|mm7|chr4 (87244390-87244991)
               

               
               489-1188, gnl|Mm7|chr4 (87245116-87244411)
               

               
               489-1188, gnl|monDom2|scaffold_19 (15789267-15789872)
               

               
               489-1188, gnl|panTro1|chr11 (20673589-20674192)
               

               
               489-1188, gnl|rheMac2|chr15 (56590654-56590051)
               

               
               489-1188, gnl|xenTro1|scaffold_884 (265336-264724)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-257, gnl|bosTau2|chr7 (14059257-14059433)
               

               
               81-257, gnl|Hg17|chr19 (6221771-6221595)
               

               
               81-257, gnl|Mm7|chr17 (55138303-55138127)
               


               
               489-1188, gnl|bosTau2|chr18 (53783185-53782480)
               

               
               489-1188, gnl|canFam2|chr11 (43028412-43029017)
               

               
               489-1188, gnl|danRer3|chr23 (8831162-8831723)
               

               
               489-1188, gnl|dasNov1|scaffold_23101 (36760-36155)
               

               
               489-1188, gnl|echTel1|scaffold_292483 (44148-43545)
               

               
               489-1188, gnl|fr1|chrUn (164150122-164150673)
               

               
               489-1188, gnl|galGal2|chrZ (13220747-13220159)
               

               
               489-1188, gnl|hg17|chr9 (20403696-20404299)
               

               
               489-1188, gnl|Hg17|chr9 (20404424-20403722)
               

               
               489-1188, gnl|loxAfr1|scaffold_66694 (6404-7009)
               

               
               489-1188, gnl|mm7|chr4 (87244390-87244991)
               

               
               489-1188, gnl|Mm7|chr4 (87245116-87244411)
               

               
               489-1188, gnl|monDom2|scaffold_19 (15789267-15789872)
               

               
               489-1188, gnl|panTro1|chr11 (20673589-20674192)
               

               
               489-1188, gnl|rheMac2|chr15 (56590654-56590051)
               

               
               489-1188, gnl|xenTro1|scaffold_884 (265336-264724)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mgm (0.180343)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)

	883-1002, - strand, RNAz p=0.661822
	1043-1188, - strand, RNAz p=0.740851

	81-257, gnl\|bosTau2\|chr7 (14059257-14059433)
	81-257, gnl\|Hg17\|chr19 (6221771-6221595)
	81-257, gnl\|Mm7\|chr17 (55138303-55138127)

	489-1188, gnl\|bosTau2\|chr18 (53783185-53782480)
	489-1188, gnl\|canFam2\|chr11 (43028412-43029017)
	489-1188, gnl\|danRer3\|chr23 (8831162-8831723)
	489-1188, gnl\|dasNov1\|scaffold_23101 (36760-36155)
	489-1188, gnl\|echTel1\|scaffold_292483 (44148-43545)
	489-1188, gnl\|fr1\|chrUn (164150122-164150673)
	489-1188, gnl\|galGal2\|chrZ (13220747-13220159)
	489-1188, gnl\|hg17\|chr9 (20403696-20404299)
	489-1188, gnl\|Hg17\|chr9 (20404424-20403722)
	489-1188, gnl\|loxAfr1\|scaffold_66694 (6404-7009)
	489-1188, gnl\|mm7\|chr4 (87244390-87244991)
	489-1188, gnl\|Mm7\|chr4 (87245116-87244411)
	489-1188, gnl\|monDom2\|scaffold_19 (15789267-15789872)
	489-1188, gnl\|panTro1\|chr11 (20673589-20674192)
	489-1188, gnl\|rheMac2\|chr15 (56590654-56590051)
	489-1188, gnl\|xenTro1\|scaffold_884 (265336-264724)