Ss1.1-Pig4-TMW8028L21.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCAGAAAACTGGCAGCTGTGACTTATAATGGAGTTGATAATAACAAGAATAAAGGGC AGCTTACTAAGAGCCCTCTTGCACAAATGGAAGAAGAAAGAAGGGAGCATGTAGCTAAGA TGAAGAAAATGGAGATGGAGATGGAGCAGGTATTTGAGATGAAGGTCAAAGAAAAAGTTC AAAAACTGAAGGACTCTGAAGCTGAGCTCCAGCGACGCCATGAGCAAATGAAAAAGAATT TGGAAGCACAGCACAAAGAGTTAGAGGAAAAACGTCGTCAGTTTGAAGATGAGAAAGCAA ACTGGGAAGCCCAACAACGCATTTTAGAACAACAGAACTCTTCAAGAACCTTGGAAAAGA ACAAGAAGAAAGGGAAGATCTTTTAAACCCTCTATTGACCACCAGTTATGTATTAGTTGC CAATATGCCAGCTTGGACATCAGTGTTTGTTGGATCTGTTTGACCAATTTGCACCGGTTT TATCCTTAATGATGGATTTAACAGCATGACAAAAATTATTATTTTTTTGTTCTTAATGGA GATTAAGATGCCTTGAATTGTCTAAGGTGTTGTGTACTTAGAAACTAACAGCTCTAAGTA CCTTTCCTACATCTTTTTTTTTTTTTTTTTTATTAAACAGATGTCTTCAATTTAATGCAA GAAAACATTTTACTGTTGTACAATCATGTTCTGGTGGTTAGATTGTTTACAGGATATTCC AAAATAAAAGGACTCTGGAAGGTTTTCATTGAGGATAAATTGCCATAATATGATGCAAAC TATGCTTCTTTATGATAATTATAATACAAAGGTTCAATTCAGTGCAGCGTATACAATAAT GTAATTTAGTCTAACACAGTTGACCCTATTTTTTGACACTTCCATTGTTTAAAAATACAC ATGGAAAAAAAAAACCTATATGCTTACAATACACCTAGAGCTTTTTTATAACAACCTTTT TTTGTTTGTTTGTTTTGAATTCTTTAAATATATATTATTCTCATTTAGTGCCCTCTTTAG CCAGAATCTCATTACTGCTTCATTTTTGTAATAACATTTAATTTAGGTATTTTCCATATA TTGGCCCTGCTAAAATAGAATATAGCATCTTTCATATGGTAGGAACCAACAAGGAAACTT TCCTTTAATTCCCTTTTTACACTTTATGGTAAGTAGCAGGGGGAAAAAAATGCATTTATA GATCATTTCTAGGCAAAATTGTGAAGCTAACGACCAACCTATTTCTACCTATGTGCAGTC TCTTTATTTTACTAGAAATGGGAATCATGGCCTCTTGAAAAGGAAAAAAAGTCACCATTC TGCATTTAGCTGTATTCATATATTGCATTTCTGTATTTTTTGTTTGTATTGTAAAAAATT CACATAATAAACAATGTTGTGATGTAAAAAAAAAAAAAAAAAAAAAAAAGTCGCGATCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCAGAAAACTGGCAGCTGTGACTTATAATGGAGTTGATAATAACAAGAATAAAGGGC AGCTTACTAAGAGCCCTCTTGCACAAATGGAAGAAGAAAGAAGGGAGCATGTAGCTAAGA TGAAGAAAATGGAGATGGAGATGGAGCAGGTATTTGAGATGAAGGTCAAAGAAAAAGTTC AAAAACTGAAGGACTCTGAAGCTGAGCTCCAGCGACGCCATGAGCAAATGAAAAAGAATT TGGAAGCACAGCACAAAGAGTTAGAGGAAAAACGTCGTCAGTTTGAAGATGAGAAAGCAA ACTGGGAAGCCCAACAACGCATTTTAGAACAACAGAACTCTTCAAGAACCTTGGAAAAGA ACAAGAAGAAAGGGAAGATCTTTTAAACCCTCTATTGACCACCAGTTATGTATTAGTTGC CAATATGCCAGCTTGGACATCAGTGTTTGTTGGATCTGTTTGACCAATTTGCACCGGTTT TATCCTTAATGATGGATTTAACAGCATGACAAAAATTATTATTTTTTTGTTCTTAATGGA GATTAAGATGCCTTGAATTGTCTAAGGTGTTGTGTACTTAGAAACTAACAGCTCTAAGTA CCTTTCCTACATCTTTTTTTTTTTTTTTTTTATTAAACAGATGTCTTCAATTTAATGCAA GAAAACATTTTACTGTTGTACAATCATGTTCTGGTGGTTAGATTGTTTACAGGATATTCC AAAATAAAAGGACTCTGGAAGGTTTTCATTGAGGATAAATTGCCATAATATGATGCAAAC TATGCTTCTTTATGATAATTATAATACAAAGGTTCAATTCAGTGCAGCGTATACAATAAT GTAATTTAGTCTAACACAGTTGACCCTATTTTTTGACACTTCCATTGTTTAAAAATACAC ATGGAAAAAAAAAACCTATATGCTTACAATACACCTAGAGCTTTTTTATAACAACCTTTT TTTGTTTGTTTGTTTTGAATTCTTTAAATATATATTATTCTCATTTAGTGCCCTCTTTAG CCAGAATCTCATTACTGCTTCATTTTTGTAATAACATTTAATTTAGGTATTTTCCATATA TTGGCCCTGCTAAAATAGAATATAGCATCTTTCATATGGTAGGAACCAACAAGGAAACTT TCCTTTAATTCCCTTTTTACACTTTATGGTAAGTAGCAGGGGGAAAAAAATGCATTTATA GATCATTTCTAGGCAAAATTGTGAAGCTAACGACCAACCTATTTCTACCTATGTGCAGTC TCTTTATTTTACTAGAAATGGGAATCATGGCCTCTTGAAAAGGAAAAAAAGTCACCATTC TGCATTTAGCTGTATTCATATATTGCATTTCTGTATTTTTTGTTTGTATTGTAAAAAATT CACATAATAAACAATGTTGTGATGTAAAAAAAAAAAAAAAAAAAAAAAAGTCGCGATCTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 194-346, gnl|bosTau2|chr4 (33902816-33902966) | |
| 194-346, gnl|canFam2|chr14 (50454075-50453934) | |
| 194-346, gnl|canFam2|chr14 (50453938-50454077) | |
| 194-346, gnl|danRer3|chr25 (18258609-18258744) | |
| 194-346, gnl|danRer3|chr25 (17409692-17409556) | |
| 194-346, gnl|dasNov1|scaffold_92314 (1006-1142) | |
| 194-346, gnl|dasNov1|scaffold_92314 (1143-1004) | |
| 194-346, gnl|echTel1|scaffold_321819 (181206-181343) | |
| 194-346, gnl|echTel1|scaffold_321819 (181343-181204) | |
| 194-346, gnl|fr1|chrUn (143121508-143121375) | |
| 194-346, gnl|fr1|chrUn (143121376-143121511) | |
| 194-346, gnl|galGal2|chr2 (45998570-45998709) | |
| 194-346, gnl|galGal2|chr2 (45998705-45998567) | |
| 194-346, gnl|hg17|chr19 (58967614-58967760) | |
| 194-346, gnl|Hg17|chr7 (35715915-35716065) | |
| 194-346, gnl|hg17|chr9 (98449792-98449930) | |
| 194-346, gnl|loxAfr1|scaffold_4583 (20098-20244) | |
| 194-346, gnl|loxAfr1|scaffold_4583 (20235-20096) | |
| 194-346, gnl|mm7|chr9 (25189251-25189110) | |
| 194-346, gnl|mm7|chr9 (25189114-25189253) | |
| 194-346, gnl|Mm7|chr9 (25189111-25189254) | |
| 194-346, gnl|monDom2|scaffold_17 (46071590-46071727) | |
| 194-346, gnl|monDom2|scaffold_17 (46071727-46071588) | |
| 194-346, gnl|oryCun1|scaffold_182947 (30970-31093) | |
| 194-346, gnl|oryCun1|scaffold_182947 (31093-30969) | |
| 194-346, gnl|panTro1|chr11 (82669766-82669908) | |
| 194-346, gnl|panTro1|chr20 (56384404-56384546) | |
| 194-346, gnl|rheMac2|chr15 (37623802-37623934) | |
| 194-346, gnl|rheMac2|chr15 (37623935-37623800) | |
| 194-346, gnl|rn3|chr11 (3115646-3115784) | |
| 194-346, gnl|rn3|chr11 (3115784-3115644) | |
| 194-346, gnl|tetNig1|chrUn_random (31768290-31768420) | |
| 194-346, gnl|tetNig1|chrUn_random (31768419-31768284) | |
| 194-346, gnl|xenTro1|scaffold_219 (752277-752139) | |
| 194-346, gnl|xenTro1|scaffold_219 (752140-752277) | |
| 1077-1422, gnl|bosTau2|chr15 (18818828-18818488) | |
| 1077-1422, gnl|Hg17|chr7 (35717831-35718157) | |
| 1077-1422, gnl|Mm7|chr9 (25191230-25191561) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 194-346, gnl|bosTau2|chr4 (33902816-33902966) | |
| 194-346, gnl|canFam2|chr14 (50454075-50453934) | |
| 194-346, gnl|canFam2|chr14 (50453938-50454077) | |
| 194-346, gnl|danRer3|chr25 (18258609-18258744) | |
| 194-346, gnl|danRer3|chr25 (17409692-17409556) | |
| 194-346, gnl|dasNov1|scaffold_92314 (1006-1142) | |
| 194-346, gnl|dasNov1|scaffold_92314 (1143-1004) | |
| 194-346, gnl|echTel1|scaffold_321819 (181206-181343) | |
| 194-346, gnl|echTel1|scaffold_321819 (181343-181204) | |
| 194-346, gnl|fr1|chrUn (143121508-143121375) | |
| 194-346, gnl|fr1|chrUn (143121376-143121511) | |
| 194-346, gnl|galGal2|chr2 (45998570-45998709) | |
| 194-346, gnl|galGal2|chr2 (45998705-45998567) | |
| 194-346, gnl|hg17|chr19 (58967614-58967760) | |
| 194-346, gnl|Hg17|chr7 (35715915-35716065) | |
| 194-346, gnl|hg17|chr9 (98449792-98449930) | |
| 194-346, gnl|loxAfr1|scaffold_4583 (20098-20244) | |
| 194-346, gnl|loxAfr1|scaffold_4583 (20235-20096) | |
| 194-346, gnl|mm7|chr9 (25189251-25189110) | |
| 194-346, gnl|mm7|chr9 (25189114-25189253) | |
| 194-346, gnl|Mm7|chr9 (25189111-25189254) | |
| 194-346, gnl|monDom2|scaffold_17 (46071590-46071727) | |
| 194-346, gnl|monDom2|scaffold_17 (46071727-46071588) | |
| 194-346, gnl|oryCun1|scaffold_182947 (30970-31093) | |
| 194-346, gnl|oryCun1|scaffold_182947 (31093-30969) | |
| 194-346, gnl|panTro1|chr11 (82669766-82669908) | |
| 194-346, gnl|panTro1|chr20 (56384404-56384546) | |
| 194-346, gnl|rheMac2|chr15 (37623802-37623934) | |
| 194-346, gnl|rheMac2|chr15 (37623935-37623800) | |
| 194-346, gnl|rn3|chr11 (3115646-3115784) | |
| 194-346, gnl|rn3|chr11 (3115784-3115644) | |
| 194-346, gnl|tetNig1|chrUn_random (31768290-31768420) | |
| 194-346, gnl|tetNig1|chrUn_random (31768419-31768284) | |
| 194-346, gnl|xenTro1|scaffold_219 (752277-752139) | |
| 194-346, gnl|xenTro1|scaffold_219 (752140-752277) | |
| 1077-1422, gnl|bosTau2|chr15 (18818828-18818488) | |
| 1077-1422, gnl|Hg17|chr7 (35717831-35718157) | |
| 1077-1422, gnl|Mm7|chr9 (25191230-25191561) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| eye (0.682012) | |
| fco (0.628832) | |
| tbr (0.616713) | |
| bfe (0.449573) | |
| liv (0.438853) | |
| spl (0.429553) | |
| hyp (0.42851) | |
| aor (0.390549) | |
| kid (0.259471) | |
| ese (0.253004) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| tes (0.207814) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ton (0.1755) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| che (0.136314) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.682012) | |
| fco (0.628832) | |
| tbr (0.616713) | |
| bfe (0.449573) | |
| liv (0.438853) | |
| spl (0.429553) | |
| hyp (0.42851) | |
| aor (0.390549) | |
| kid (0.259471) | |
| ese (0.253004) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| tes (0.207814) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ton (0.1755) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| che (0.136314) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) |