Non-Coding RNA Search

Ss1.1-Pig4-TMW8028M01.3

Sequence:


               
               AGTAGGCTGCGTATTATCACTTGGAAACTTAAAACAAACAAACAAACAAAAAAACTCGGA
GATTTTTACTCATTAGTTCTTCGTTCTAGCTAAAACTGCTAGGGCAGATCATTAGTGCTG
GCAGGACAGTGTCACCTAAACTGCTATGGAGGTTCTCAGACCTAGGGGTCTAATTGGAGC
TGTTGCTGCCGGCCTACGCCACAGCCACAGCAACGCCAGATCCGAGCCTAATCTGCGACC
TACACCACAGTGCACGGCAATGCTGGATCCTTAACCCACTGAGTGAGGCCAGGAATCGAA
CCTGCAACCTCGTGGTTCCTAGTTGGATTTGTTTCCACTGTGCCACGATGGGAACTCCTC
CATGCACATTTTACAGAGCCCCTCTGATAAGTCTGATGCAAGGAACCACTGGTCTAGACT
TTCTAGTGATTCGTATTTATAAGGAGTGAAATAGTTTGAAAGCTACCCAGTAATTGTTGG
GATTAATCCTATGAAATAAATTCTTAAACTGTTTTTTTTGATATAAAGTTAGATTTAAGA
CTGAAATAGATAGCAGGCAGGAGATAGGTATAGAATCTGGGTTAATTGAAATTTTGTGAT
CTGTATTAAATCATGTTTATTGATCGAATGGCAAGGCACACGTACTTTTAGAGATGTATT
ATTTACACTTTGAAGTTTTTTAAAAATGTTAACAATATGTATTACCATTCACTATTTTTA
GGTCAGTTGTAAATCAGAAGTACTGTAATCTTGTTAATTAAAATCTAAAACTTTAGCTGT
ATTTCAGTAGTGTTCAAACATATCTTACCAAAGCTGAACAGAACCCTTATAATTAGTCTT
GCTGTAATTTTGCACAAAATAACGAATTAATAACTGAGTTAAAAAAATTGCCTTTGGCAT
TTTGGTTGAAAAAAATTGCATTTTGAAACTATATCACATATGTCTTGAACTAAAATGATG
GGAGTTAATTTTGTATTTACTTTGAGGCGGTATCATGTAAATATGCAGACATTGAATGTA
GTATGGACTGTGTCCACAGTGAGGTTTTGGGTGGATGCAGTTTATAAATATGCCAATTAT
ATACCCTCATGCACTTGTCTGATTTTGAGCCTGTAAAATGACTACTTTTTACACATTTAA
TAAAGAAAAAAAGTTCTGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAGGCTGCGTATTATCACTTGGAAACTTAAAACAAACAAACAAACAAAAAAACTCGGA
GATTTTTACTCATTAGTTCTTCGTTCTAGCTAAAACTGCTAGGGCAGATCATTAGTGCTG
GCAGGACAGTGTCACCTAAACTGCTATGGAGGTTCTCAGACCTAGGGGTCTAATTGGAGC
TGTTGCTGCCGGCCTACGCCACAGCCACAGCAACGCCAGATCCGAGCCTAATCTGCGACC
TACACCACAGTGCACGGCAATGCTGGATCCTTAACCCACTGAGTGAGGCCAGGAATCGAA
CCTGCAACCTCGTGGTTCCTAGTTGGATTTGTTTCCACTGTGCCACGATGGGAACTCCTC
CATGCACATTTTACAGAGCCCCTCTGATAAGTCTGATGCAAGGAACCACTGGTCTAGACT
TTCTAGTGATTCGTATTTATAAGGAGTGAAATAGTTTGAAAGCTACCCAGTAATTGTTGG
GATTAATCCTATGAAATAAATTCTTAAACTGTTTTTTTTGATATAAAGTTAGATTTAAGA
CTGAAATAGATAGCAGGCAGGAGATAGGTATAGAATCTGGGTTAATTGAAATTTTGTGAT
CTGTATTAAATCATGTTTATTGATCGAATGGCAAGGCACACGTACTTTTAGAGATGTATT
ATTTACACTTTGAAGTTTTTTAAAAATGTTAACAATATGTATTACCATTCACTATTTTTA
GGTCAGTTGTAAATCAGAAGTACTGTAATCTTGTTAATTAAAATCTAAAACTTTAGCTGT
ATTTCAGTAGTGTTCAAACATATCTTACCAAAGCTGAACAGAACCCTTATAATTAGTCTT
GCTGTAATTTTGCACAAAATAACGAATTAATAACTGAGTTAAAAAAATTGCCTTTGGCAT
TTTGGTTGAAAAAAATTGCATTTTGAAACTATATCACATATGTCTTGAACTAAAATGATG
GGAGTTAATTTTGTATTTACTTTGAGGCGGTATCATGTAAATATGCAGACATTGAATGTA
GTATGGACTGTGTCCACAGTGAGGTTTTGGGTGGATGCAGTTTATAAATATGCCAATTAT
ATACCCTCATGCACTTGTCTGATTTTGAGCCTGTAAAATGACTACTTTTTACACATTTAA
TAAAGAAAAAAAGTTCTGAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               362-718, gnl|bosTau2|chr29 (39414180-39414528)
               

               
               362-718, gnl|Hg17|chrX (18614265-18613908)
               


               
               731-1165, gnl|bosTau2|chr7 (30685055-30684607)
               

               
               731-1165, gnl|Hg17|chrX (18613895-18613276)
               


               
               930-1149, gnl|bosTau2|chr27 (5143231-5143452)
               

               
               930-1149, gnl|Hg17|chrX (18613516-18613294)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               362-718, gnl|bosTau2|chr29 (39414180-39414528)
               

               
               362-718, gnl|Hg17|chrX (18614265-18613908)
               


               
               731-1165, gnl|bosTau2|chr7 (30685055-30684607)
               

               
               731-1165, gnl|Hg17|chrX (18613895-18613276)
               


               
               930-1149, gnl|bosTau2|chr27 (5143231-5143452)
               

               
               930-1149, gnl|Hg17|chrX (18613516-18613294)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               thg (0.253582)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               thg (0.253582)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

	362-718, gnl\|bosTau2\|chr29 (39414180-39414528)
	362-718, gnl\|Hg17\|chrX (18614265-18613908)

	731-1165, gnl\|bosTau2\|chr7 (30685055-30684607)
	731-1165, gnl\|Hg17\|chrX (18613895-18613276)

	930-1149, gnl\|bosTau2\|chr27 (5143231-5143452)
	930-1149, gnl\|Hg17\|chrX (18613516-18613294)

	tbr (0.308356)
	sme (0.305437)
	thg (0.253582)
	fcc (0.197785)
	aor (0.195274)
	fty (0.17584)
	fbs (0.175346)
	rec (0.17307)
	fat (0.147427)
	spl (0.143184)
	lnt (0.142308)
	kid (0.129735)
	ret (0.128733)
	ese (0.126502)
	spc (0.113366)