Ss1.1-Pig4-TMW8028M08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGCCCGCCTCCCAGCCAGGCGGGAGGCGGGGGCATGGAGCCGGCCCCACCTTGCTGTT GAGCCCTGGCCCCGCGCAGCTGCCTAGGGCTCGCTGGAGGGGCTCAGTGGGGCGTGCGCC GGTCGCGCGGCTCCCGGGACCCGTGCGGCCCGGCGCTGCGCGGATGGCCCAGCTCCCGCG GCCCGCGCTCGCCCTCCTCCTCCTGCTACTGACCGCGGCTTTCAGATGCCAGGAGCAGGC CCAGCCCACCGATTGGAGGGCCACCCTGAAGACCATCCGGAACGGCGTTCACAAAATAGA CACGTACCTCAACGCCGCCTTGGACCTTCTGGGAGGAGAGGATGGGCTCTGCCAGTATAA GTGCAATGACGGATCTAAGCCTTTCCCACGTTATGGATATAAACCCTCCCCACCGAATGG ATGTGGCTCCCCACTCTTTGGTGTTCATCTTAACATCGGCATCCCTTCCCTGACAAAGTG CTGCAACCAGCACGACAGGTGCTATGAGACCTGCGGCAAAAGCAAAAATGACTGTGATGA GGAGTTCCAGTACTGCCTCTCCAAAATCTGCCGAGACGTGCAGAAAACACTAGGACTAGC TCAGCATATCCAGGCCTGTGAAACCACAGTGGAGCTCTTGTTTGACAGTGTTATACATCT AGGCTGTAAACCATACCTGGACAGCCAACGAGCTGCATGTAGATGTCGCTACCAAGAAAA AACCGATCTTTAAAGAAGATGCTGACAGGTGGTGACAACAGCTGAGGACAGAAGAACTAA CCTTTGACAAAGAACTAATGCTTTTACGGCATAATGCTGCCTTATTTTTGTGAAAGGATT ATTTTAAGACCTTATTTTGACATTAAAACTTCAAACTAAAGAAGTAAATGGAGATATCTT CCTGGACATTGCTGCCTTAGGGTGCCACATTGTCTTGACCAGTCTCAGAAAGAGGTGCAT GTTAAGTGGAGAAGTTCTTAAAAGAAAACGTCCGTAACTCAGTTTTCACAACCGTATTAA CCAAAAAGTAAGGTCAAGTGTAAGATTCATTGTAAGGTATGTTCAATATTATCTTATTTG GAAATAAGGGAAATCTTCCCTTAGAAGTATGTATGTTTACTGTAAAATTTAAAATACACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGCCCGCCTCCCAGCCAGGCGGGAGGCGGGGGCATGGAGCCGGCCCCACCTTGCTGTT GAGCCCTGGCCCCGCGCAGCTGCCTAGGGCTCGCTGGAGGGGCTCAGTGGGGCGTGCGCC GGTCGCGCGGCTCCCGGGACCCGTGCGGCCCGGCGCTGCGCGGATGGCCCAGCTCCCGCG GCCCGCGCTCGCCCTCCTCCTCCTGCTACTGACCGCGGCTTTCAGATGCCAGGAGCAGGC CCAGCCCACCGATTGGAGGGCCACCCTGAAGACCATCCGGAACGGCGTTCACAAAATAGA CACGTACCTCAACGCCGCCTTGGACCTTCTGGGAGGAGAGGATGGGCTCTGCCAGTATAA GTGCAATGACGGATCTAAGCCTTTCCCACGTTATGGATATAAACCCTCCCCACCGAATGG ATGTGGCTCCCCACTCTTTGGTGTTCATCTTAACATCGGCATCCCTTCCCTGACAAAGTG CTGCAACCAGCACGACAGGTGCTATGAGACCTGCGGCAAAAGCAAAAATGACTGTGATGA GGAGTTCCAGTACTGCCTCTCCAAAATCTGCCGAGACGTGCAGAAAACACTAGGACTAGC TCAGCATATCCAGGCCTGTGAAACCACAGTGGAGCTCTTGTTTGACAGTGTTATACATCT AGGCTGTAAACCATACCTGGACAGCCAACGAGCTGCATGTAGATGTCGCTACCAAGAAAA AACCGATCTTTAAAGAAGATGCTGACAGGTGGTGACAACAGCTGAGGACAGAAGAACTAA CCTTTGACAAAGAACTAATGCTTTTACGGCATAATGCTGCCTTATTTTTGTGAAAGGATT ATTTTAAGACCTTATTTTGACATTAAAACTTCAAACTAAAGAAGTAAATGGAGATATCTT CCTGGACATTGCTGCCTTAGGGTGCCACATTGTCTTGACCAGTCTCAGAAAGAGGTGCAT GTTAAGTGGAGAAGTTCTTAAAAGAAAACGTCCGTAACTCAGTTTTCACAACCGTATTAA CCAAAAAGTAAGGTCAAGTGTAAGATTCATTGTAAGGTATGTTCAATATTATCTTATTTG GAAATAAGGGAAATCTTCCCTTAGAAGTATGTATGTTTACTGTAAAATTTAAAATACACA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 75-372, gnl|bosTau2|chr6 (3598146-3597861) | |
| 75-372, gnl|Hg17|chr4 (111008676-111008361) | |
| 75-372, gnl|Mm7|chr3 (129718038-129718290) | |
| 444-614, gnl|bosTau2|chr6 (3589964-3589794) | |
| 444-614, gnl|canFam2|chr32 (32839199-32839030) | |
| 444-614, gnl|canFam2|chr32 (32839024-32839209) | |
| 444-614, gnl|danRer3|chrNA (62488821-62488642) | |
| 444-614, gnl|dasNov1|scaffold_125443 (5396-5565) | |
| 444-614, gnl|dasNov1|scaffold_81167 (3317-3132) | |
| 444-614, gnl|echTel1|scaffold_315942 (7423-7254) | |
| 444-614, gnl|echTel1|scaffold_315942 (7248-7433) | |
| 444-614, gnl|fr1|chrUn (238409362-238409193) | |
| 444-614, gnl|fr1|chrUn (238409187-238409365) | |
| 444-614, gnl|galGal2|chr4 (58652371-58652185) | |
| 444-614, gnl|hg17|chr13 (38374673-38374846) | |
| 444-614, gnl|hg17|chr4 (110996304-110996489) | |
| 444-614, gnl|Hg17|chr4 (110996478-110996308) | |
| 444-614, gnl|loxAfr1|scaffold_14577 (34193-34362) | |
| 444-614, gnl|loxAfr1|scaffold_44779 (5828-6013) | |
| 444-614, gnl|mm7|chr3 (129729623-129729787) | |
| 444-614, gnl|mm7|chr3 (129729793-129729609) | |
| 444-614, gnl|Mm7|chr3 (129729617-129729787) | |
| 444-614, gnl|monDom2|scaffold_9 (84991215-84991030) | |
| 444-614, gnl|oryCun1|scaffold_169139 (24511-24691) | |
| 444-614, gnl|oryCun1|scaffold_199046 (257-98) | |
| 444-614, gnl|panTro1|chr14 (37757845-37758017) | |
| 444-614, gnl|panTro1|chr3 (127493331-127493516) | |
| 444-614, gnl|rheMac2|chr17 (18022763-18022935) | |
| 444-614, gnl|rheMac2|chr5 (102628919-102629104) | |
| 444-614, gnl|rn3|chr2 (227329451-227329615) | |
| 444-614, gnl|rn3|chr2 (227329621-227329437) | |
| 444-614, gnl|tetNig1|chr18 (6156982-6156813) | |
| 444-614, gnl|tetNig1|chr18 (6156807-6156985) | |
| 444-614, gnl|xenTro1|scaffold_445 (934064-933887) | |
| 910-1140, gnl|bosTau2|chr14 (47483081-47482858) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-372, gnl|bosTau2|chr6 (3598146-3597861) | |
| 75-372, gnl|Hg17|chr4 (111008676-111008361) | |
| 75-372, gnl|Mm7|chr3 (129718038-129718290) | |
| 444-614, gnl|bosTau2|chr6 (3589964-3589794) | |
| 444-614, gnl|canFam2|chr32 (32839199-32839030) | |
| 444-614, gnl|canFam2|chr32 (32839024-32839209) | |
| 444-614, gnl|danRer3|chrNA (62488821-62488642) | |
| 444-614, gnl|dasNov1|scaffold_125443 (5396-5565) | |
| 444-614, gnl|dasNov1|scaffold_81167 (3317-3132) | |
| 444-614, gnl|echTel1|scaffold_315942 (7423-7254) | |
| 444-614, gnl|echTel1|scaffold_315942 (7248-7433) | |
| 444-614, gnl|fr1|chrUn (238409362-238409193) | |
| 444-614, gnl|fr1|chrUn (238409187-238409365) | |
| 444-614, gnl|galGal2|chr4 (58652371-58652185) | |
| 444-614, gnl|hg17|chr13 (38374673-38374846) | |
| 444-614, gnl|hg17|chr4 (110996304-110996489) | |
| 444-614, gnl|Hg17|chr4 (110996478-110996308) | |
| 444-614, gnl|loxAfr1|scaffold_14577 (34193-34362) | |
| 444-614, gnl|loxAfr1|scaffold_44779 (5828-6013) | |
| 444-614, gnl|mm7|chr3 (129729623-129729787) | |
| 444-614, gnl|mm7|chr3 (129729793-129729609) | |
| 444-614, gnl|Mm7|chr3 (129729617-129729787) | |
| 444-614, gnl|monDom2|scaffold_9 (84991215-84991030) | |
| 444-614, gnl|oryCun1|scaffold_169139 (24511-24691) | |
| 444-614, gnl|oryCun1|scaffold_199046 (257-98) | |
| 444-614, gnl|panTro1|chr14 (37757845-37758017) | |
| 444-614, gnl|panTro1|chr3 (127493331-127493516) | |
| 444-614, gnl|rheMac2|chr17 (18022763-18022935) | |
| 444-614, gnl|rheMac2|chr5 (102628919-102629104) | |
| 444-614, gnl|rn3|chr2 (227329451-227329615) | |
| 444-614, gnl|rn3|chr2 (227329621-227329437) | |
| 444-614, gnl|tetNig1|chr18 (6156982-6156813) | |
| 444-614, gnl|tetNig1|chr18 (6156807-6156985) | |
| 444-614, gnl|xenTro1|scaffold_445 (934064-933887) | |
| 910-1140, gnl|bosTau2|chr14 (47483081-47482858) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| pan (0.23596) | |
| mgp (0.230681) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| thg (0.126791) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (0.23596) | |
| mgp (0.230681) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| thg (0.126791) | |
| med (0.116252) | |
| eje (0.0988338) |