Ss1.1-Pig4-TMW8028M13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGAAGAACTCGGGTGTCTTCAAGCCGTTTAGTGGGAGCATCCAGAAGATGATCCTGAA TGACCGGACCATCCACGTGAAGCATGACTTTACCTGGGGAGTGAATGTGGAGAATGCAGC TCACCCCTGCGTGGGGTCTCCCTGTGCCCATGGGGGCAGCTGCCGGCCCAGAAAGGAGGG CTATGAGTGTGACTGTCCCTTGGGCTTCGAGGGGCTACACTGCCAGAAAGCCATCACGGA AGCCATTGAGATCCCGCAGTTTATCGGCCGCAGTTACCTGACGTATGACAACCCAGCCAT CCTCAAGAGGGTTTCGGGATCGAGATCAAATGCATTCATGAGGTTTAAGACAACTGCCAA AGATGGCCTGTTGATGTGGAGGGGAGACAGCCCCATGAGACCCAACAGTGACTTCATTTC CTTGGGCCTTCGGGATGGAGCCCTGGTGTTCAGCTATAACCTGGGCAGTGGTGTGGCATC CATCCTGGTGAACGGCTCATTCAACGATGGCCGGTGGCACCGAGTCAAGGCTGTTCGGGA TGGCCAATCCGGAAAGATAACTGTGGATGACTATGGGGCCAGAACGGGCAAGTCACCTGG CATGATGAGGCAGCTCAACATCAATGGAGCTCTGTATGTGGGTGGAATGAAGGAAATTGC CCTGCACACTAATAGGCAGTACATGCGAGGCCTCGTGGGCTGCATTTCTCATTTCACCCT GTCCACTGATTACCACATTGCCCTTGTGGAAGACGCCGTGGATGGGAAAAACATCAATAC TTGCGGAGCCAAGTAACACCAGCTGGCCTTGCCCGAGGGACTGAGCCTTCTATCCTGAGA ATCCCGGGGGGGCCCGAGACTGCCTGACGCCACACACAGAGGCACGGGGACCAGGTGTAT TTCCTCTCAGCAAGGAGCAAGTACACCCTGATGAGAAACGAGGACTGAGACAGGAGCCCC TGTGTGGCCTTTCCTGCTGACACTCCGTGGGCCAAACCCAACGGAATGCTCTGTGTAGGA AGCATCAGTTGCCTGTGGAGTGGCTGCCAGAGATCACACGTCAAGGCGAATTTCACAGCC TGTCTGCTCTAGCTCAGTGACTGTGTTGTGATTCATAGTTCGTTTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGAAGAACTCGGGTGTCTTCAAGCCGTTTAGTGGGAGCATCCAGAAGATGATCCTGAA TGACCGGACCATCCACGTGAAGCATGACTTTACCTGGGGAGTGAATGTGGAGAATGCAGC TCACCCCTGCGTGGGGTCTCCCTGTGCCCATGGGGGCAGCTGCCGGCCCAGAAAGGAGGG CTATGAGTGTGACTGTCCCTTGGGCTTCGAGGGGCTACACTGCCAGAAAGCCATCACGGA AGCCATTGAGATCCCGCAGTTTATCGGCCGCAGTTACCTGACGTATGACAACCCAGCCAT CCTCAAGAGGGTTTCGGGATCGAGATCAAATGCATTCATGAGGTTTAAGACAACTGCCAA AGATGGCCTGTTGATGTGGAGGGGAGACAGCCCCATGAGACCCAACAGTGACTTCATTTC CTTGGGCCTTCGGGATGGAGCCCTGGTGTTCAGCTATAACCTGGGCAGTGGTGTGGCATC CATCCTGGTGAACGGCTCATTCAACGATGGCCGGTGGCACCGAGTCAAGGCTGTTCGGGA TGGCCAATCCGGAAAGATAACTGTGGATGACTATGGGGCCAGAACGGGCAAGTCACCTGG CATGATGAGGCAGCTCAACATCAATGGAGCTCTGTATGTGGGTGGAATGAAGGAAATTGC CCTGCACACTAATAGGCAGTACATGCGAGGCCTCGTGGGCTGCATTTCTCATTTCACCCT GTCCACTGATTACCACATTGCCCTTGTGGAAGACGCCGTGGATGGGAAAAACATCAATAC TTGCGGAGCCAAGTAACACCAGCTGGCCTTGCCCGAGGGACTGAGCCTTCTATCCTGAGA ATCCCGGGGGGGCCCGAGACTGCCTGACGCCACACACAGAGGCACGGGGACCAGGTGTAT TTCCTCTCAGCAAGGAGCAAGTACACCCTGATGAGAAACGAGGACTGAGACAGGAGCCCC TGTGTGGCCTTTCCTGCTGACACTCCGTGGGCCAAACCCAACGGAATGCTCTGTGTAGGA AGCATCAGTTGCCTGTGGAGTGGCTGCCAGAGATCACACGTCAAGGCGAATTTCACAGCC TGTCTGCTCTAGCTCAGTGACTGTGTTGTGATTCATAGTTCGTTTAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 113-230, + strand, RNAz p=0.980236 | |
| 840-954, - strand, RNAz p=0.529951 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 113-230, + strand, RNAz p=0.980236 | |
| 840-954, - strand, RNAz p=0.529951 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 47-230, gnl|bosTau2|chr20 (22468831-22469014) | |
| 47-230, gnl|canFam2|chr4 (73613425-73613189) | |
| 47-230, gnl|danRer3|chrUn (76428050-76428264) | |
| 47-230, gnl|dasNov1|scaffold_82304 (7963-8200) | |
| 47-230, gnl|echTel1|scaffold_191965 (565-322) | |
| 47-230, gnl|fr1|chrUn (118231069-118231303) | |
| 47-230, gnl|galGal2|chrZ_random (10970217-10970437) | |
| 47-230, gnl|hg17|chr5 (38474095-38474331) | |
| 47-230, gnl|Hg17|chr5 (38474131-38474314) | |
| 47-230, gnl|loxAfr1|scaffold_32937 (10777-11004) | |
| 47-230, gnl|mm7|chr15 (7058622-7058387) | |
| 47-230, gnl|Mm7|chr15 (7058584-7058401) | |
| 47-230, gnl|monDom2|scaffold_20 (33407281-33407046) | |
| 47-230, gnl|oryCun1|scaffold_178348 (1091-853) | |
| 47-230, gnl|panTro1|chr4 (78274972-78274736) | |
| 47-230, gnl|rheMac2|chr6 (38271865-38272101) | |
| 47-230, gnl|rn3|chr2 (56445188-56444953) | |
| 47-230, gnl|tetNig1|chr12 (7485067-7484848) | |
| 47-230, gnl|xenTro1|scaffold_363 (403605-403389) | |
| 308-456, gnl|bosTau2|chr20 (22480847-22480995) | |
| 308-456, gnl|canFam2|chr4 (73601400-73601220) | |
| 308-456, gnl|danRer3|chrUn (76433916-76434074) | |
| 308-456, gnl|echTel1|scaffold_102739 (1359-1544) | |
| 308-456, gnl|fr1|chrUn (118232057-118232218) | |
| 308-456, gnl|galGal2|chrZ_random (10974995-10975180) | |
| 308-456, gnl|hg17|chr5 (38487160-38487341) | |
| 308-456, gnl|Hg17|chr5 (38487172-38487320) | |
| 308-456, gnl|loxAfr1|scaffold_40395 (17535-17716) | |
| 308-456, gnl|mm7|chr15 (7046597-7046413) | |
| 308-456, gnl|Mm7|chr15 (7046583-7046435) | |
| 308-456, gnl|monDom2|scaffold_20 (33386289-33386092) | |
| 308-456, gnl|panTro1|chr4 (78261866-78261685) | |
| 308-456, gnl|rheMac2|chr6 (38284820-38285001) | |
| 308-456, gnl|rn3|chr2 (56433180-56432999) | |
| 308-456, gnl|tetNig1|chr12 (7484184-7484026) | |
| 308-456, gnl|xenTro1|scaffold_363 (401121-400959) | |
| 641-1128, gnl|bosTau2|chr20 (22493861-22494349) | |
| 641-1128, gnl|Hg17|chr5 (38499690-38500185) | |
| 641-1128, gnl|Mm7|chr15 (7034616-7034144) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-230, gnl|bosTau2|chr20 (22468831-22469014) | |
| 47-230, gnl|canFam2|chr4 (73613425-73613189) | |
| 47-230, gnl|danRer3|chrUn (76428050-76428264) | |
| 47-230, gnl|dasNov1|scaffold_82304 (7963-8200) | |
| 47-230, gnl|echTel1|scaffold_191965 (565-322) | |
| 47-230, gnl|fr1|chrUn (118231069-118231303) | |
| 47-230, gnl|galGal2|chrZ_random (10970217-10970437) | |
| 47-230, gnl|hg17|chr5 (38474095-38474331) | |
| 47-230, gnl|Hg17|chr5 (38474131-38474314) | |
| 47-230, gnl|loxAfr1|scaffold_32937 (10777-11004) | |
| 47-230, gnl|mm7|chr15 (7058622-7058387) | |
| 47-230, gnl|Mm7|chr15 (7058584-7058401) | |
| 47-230, gnl|monDom2|scaffold_20 (33407281-33407046) | |
| 47-230, gnl|oryCun1|scaffold_178348 (1091-853) | |
| 47-230, gnl|panTro1|chr4 (78274972-78274736) | |
| 47-230, gnl|rheMac2|chr6 (38271865-38272101) | |
| 47-230, gnl|rn3|chr2 (56445188-56444953) | |
| 47-230, gnl|tetNig1|chr12 (7485067-7484848) | |
| 47-230, gnl|xenTro1|scaffold_363 (403605-403389) | |
| 308-456, gnl|bosTau2|chr20 (22480847-22480995) | |
| 308-456, gnl|canFam2|chr4 (73601400-73601220) | |
| 308-456, gnl|danRer3|chrUn (76433916-76434074) | |
| 308-456, gnl|echTel1|scaffold_102739 (1359-1544) | |
| 308-456, gnl|fr1|chrUn (118232057-118232218) | |
| 308-456, gnl|galGal2|chrZ_random (10974995-10975180) | |
| 308-456, gnl|hg17|chr5 (38487160-38487341) | |
| 308-456, gnl|Hg17|chr5 (38487172-38487320) | |
| 308-456, gnl|loxAfr1|scaffold_40395 (17535-17716) | |
| 308-456, gnl|mm7|chr15 (7046597-7046413) | |
| 308-456, gnl|Mm7|chr15 (7046583-7046435) | |
| 308-456, gnl|monDom2|scaffold_20 (33386289-33386092) | |
| 308-456, gnl|panTro1|chr4 (78261866-78261685) | |
| 308-456, gnl|rheMac2|chr6 (38284820-38285001) | |
| 308-456, gnl|rn3|chr2 (56433180-56432999) | |
| 308-456, gnl|tetNig1|chr12 (7484184-7484026) | |
| 308-456, gnl|xenTro1|scaffold_363 (401121-400959) | |
| 641-1128, gnl|bosTau2|chr20 (22493861-22494349) | |
| 641-1128, gnl|Hg17|chr5 (38499690-38500185) | |
| 641-1128, gnl|Mm7|chr15 (7034616-7034144) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) |