Non-Coding RNA Search

Ss1.1-Pig4-TMW8028M22.5

Sequence:


               
               TTCGATGCCATTGTTTAGCATCTTTGAGAAAGAAGTTCTGTCTTACCCTCTCTCCACAGA
AAGACTGAGTGGGAGACCCAAGCAAAAGGGTACAAGAGAACTTAGTGACTCCTTGAGGTG
TTTGTCAGTTTTGACTTTTTTCCCTTTTGTTATATTATTTCTTTTATGTATTGTCTTAAT
GAACCTGTTGTTACCTGAGTTTGAAAAGGATGAAGACAGCTGCTACCATTAAGGACCAAA
TTTCATGCTACCACTGAACAACAACAACAACAAAATCCACTCAGTCTGTGTTAAATTGTA
TGTCTTTTTAAAGGTATTTGGAGATTCCACTAAGCTTTTAGAGACAGCTGAGCAGCTCAG
GAAACCTGTAATCTGGACATAACTTTTTGGACCTGATTTTCATGCTTCTGCTGCTCTGCA
AGCCTCTGAAGAGCAATAGCTAATTTATTATTACTGTAACTTTTTAAGGCTTTAAAGTGC
CTCAGGGGTCCTCTGAAACTAATTTTCTATTTCTGGGATTCCCTGGATTCTTAATAAGAG
ATGGTGACATAATGATTATAGGAATTTTTTTTTTTTAGGAAGAAAGTTGTCCCTTCTTCA
GTACTTGCCTCTTACTAGCATTGAGTTGTCACAGGGATAAAAATTGGTTAATTTTTTATT
TCTAACTCCCAGCAGGCTCCTCTTGCCCAGTATTTATTTGATTCCCTTTAACTACCAGAG
GGGAGGGGGGAATGAACTCATTCAAGCTGCCATTATTTATCTATGGACTGCAGCAGTACA
CTGAATTGTACTGCAGCAGGGATTATTGAGATGCTCTGGGGGTGTATTGTATACCTTCCA
GCTTTCTTTATTTCCTAATTGAATTTTCTTTTCTTGATGTTGGTCTCCTTCATATCACCT
CAAGGTTTAGATTTGTGAAGGAACAAATTTGATGGGGATAATAGTCTTGAAAGGAGATAA
TATTGTATATAATCAGAAGGAAGAGGAAAGAAGGACTTGTCGACTTTGGTATTTTGCTGT
TAGGTGGCCAGTTTTATTTCTCATGGGGAAATCTGACCCACCTGTCATGTTGGCTCCTAA
GGAACTGCTGTTGTAAGCGGCTCATCAAGAGTTGAACTTCATGTAGCCTTGTTGGGAATA
TGGAAAAGGAAGAAAGCCACAGGACTGCCCATTCAGTCTTGGGAGGATCTGGATGATTCT
ACACAAGCAAAAATGACTTGAAATTTATGTATAGACACTTCTCTATCAATCCATCTGAAT
GTTGTCTAATAGCCCTTCTCCAAAGCAGGGGTGGAATGTTTTGGTTTCACCGCAGATTTT
CTACTCATTTCATTTGGAATCAGCTTGTAGATTCCTGGTCCCTTTTGTATATAACCTTTA
TTCTTTTGCTTTTTTAAAAATAATTTTGTTTCATATTTAAAGTCCTGTATTAGTCAATGA
TTCATGTTCAGCATTATTTGAACCATTTGCCATTACAGAAAGAGAAATGCTTATTTGTGT
TTTAAATAAAAACCGATATAGCAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGATGCCATTGTTTAGCATCTTTGAGAAAGAAGTTCTGTCTTACCCTCTCTCCACAGA
AAGACTGAGTGGGAGACCCAAGCAAAAGGGTACAAGAGAACTTAGTGACTCCTTGAGGTG
TTTGTCAGTTTTGACTTTTTTCCCTTTTGTTATATTATTTCTTTTATGTATTGTCTTAAT
GAACCTGTTGTTACCTGAGTTTGAAAAGGATGAAGACAGCTGCTACCATTAAGGACCAAA
TTTCATGCTACCACTGAACAACAACAACAACAAAATCCACTCAGTCTGTGTTAAATTGTA
TGTCTTTTTAAAGGTATTTGGAGATTCCACTAAGCTTTTAGAGACAGCTGAGCAGCTCAG
GAAACCTGTAATCTGGACATAACTTTTTGGACCTGATTTTCATGCTTCTGCTGCTCTGCA
AGCCTCTGAAGAGCAATAGCTAATTTATTATTACTGTAACTTTTTAAGGCTTTAAAGTGC
CTCAGGGGTCCTCTGAAACTAATTTTCTATTTCTGGGATTCCCTGGATTCTTAATAAGAG
ATGGTGACATAATGATTATAGGAATTTTTTTTTTTTAGGAAGAAAGTTGTCCCTTCTTCA
GTACTTGCCTCTTACTAGCATTGAGTTGTCACAGGGATAAAAATTGGTTAATTTTTTATT
TCTAACTCCCAGCAGGCTCCTCTTGCCCAGTATTTATTTGATTCCCTTTAACTACCAGAG
GGGAGGGGGGAATGAACTCATTCAAGCTGCCATTATTTATCTATGGACTGCAGCAGTACA
CTGAATTGTACTGCAGCAGGGATTATTGAGATGCTCTGGGGGTGTATTGTATACCTTCCA
GCTTTCTTTATTTCCTAATTGAATTTTCTTTTCTTGATGTTGGTCTCCTTCATATCACCT
CAAGGTTTAGATTTGTGAAGGAACAAATTTGATGGGGATAATAGTCTTGAAAGGAGATAA
TATTGTATATAATCAGAAGGAAGAGGAAAGAAGGACTTGTCGACTTTGGTATTTTGCTGT
TAGGTGGCCAGTTTTATTTCTCATGGGGAAATCTGACCCACCTGTCATGTTGGCTCCTAA
GGAACTGCTGTTGTAAGCGGCTCATCAAGAGTTGAACTTCATGTAGCCTTGTTGGGAATA
TGGAAAAGGAAGAAAGCCACAGGACTGCCCATTCAGTCTTGGGAGGATCTGGATGATTCT
ACACAAGCAAAAATGACTTGAAATTTATGTATAGACACTTCTCTATCAATCCATCTGAAT
GTTGTCTAATAGCCCTTCTCCAAAGCAGGGGTGGAATGTTTTGGTTTCACCGCAGATTTT
CTACTCATTTCATTTGGAATCAGCTTGTAGATTCCTGGTCCCTTTTGTATATAACCTTTA
TTCTTTTGCTTTTTTAAAAATAATTTTGTTTCATATTTAAAGTCCTGTATTAGTCAATGA
TTCATGTTCAGCATTATTTGAACCATTTGCCATTACAGAAAGAGAAATGCTTATTTGTGT
TTTAAATAAAAACCGATATAGCAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|58760442|gb|AAW82129.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58760442|gb|AAW82129.1|

Predicted RNA structure(s): 5 entry(ies)

More info

Predicted RNA structure(s): 5 entry(ies)

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               1-114, - strand, RNAz p=0.551295
               

               
               432-589, - strand, RNAz p=0.852127
               

               
               739-975, - strand, RNAz p=0.983714
               

               
               748-1397, - strand, RNAz p=0.985924
               

               
               1016-1134, - strand, RNAz p=0.681778

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-114, - strand, RNAz p=0.551295
               

               
               432-589, - strand, RNAz p=0.852127
               

               
               739-975, - strand, RNAz p=0.983714
               

               
               748-1397, - strand, RNAz p=0.985924
               

               
               1016-1134, - strand, RNAz p=0.681778

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1524, gnl|bosTau2|chr16 (289745-291268)
               

               
               1-1524, gnl|Hg17|chr1 (200553384-200554905)
               

               
               1-1524, gnl|Mm7|chr1 (133522248-133520789)
               


               
               595-1506, gnl|bosTau2|chr15 (29293597-29292694)
               

               
               595-1506, gnl|Hg17|chr1 (200553968-200554892)
               

               
               595-1506, gnl|Mm7|chr1 (133521706-133520802)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1524, gnl|bosTau2|chr16 (289745-291268)
               

               
               1-1524, gnl|Hg17|chr1 (200553384-200554905)
               

               
               1-1524, gnl|Mm7|chr1 (133522248-133520789)
               


               
               595-1506, gnl|bosTau2|chr15 (29293597-29292694)
               

               
               595-1506, gnl|Hg17|chr1 (200553968-200554892)
               

               
               595-1506, gnl|Mm7|chr1 (133521706-133520802)

Expressed library(ies): 42 entry(ies)

More info

Expressed library(ies): 42 entry(ies)

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               aor (0.781097)
               

               
               lun (0.752445)
               

               
               lyg (0.532411)
               

               
               pro (0.512033)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               nms (0.427716)
               

               
               cty (0.41632)
               

               
               tes (0.415628)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               ebs (0.236602)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 42 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.781097)
               

               
               lun (0.752445)
               

               
               lyg (0.532411)
               

               
               pro (0.512033)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               nms (0.427716)
               

               
               cty (0.41632)
               

               
               tes (0.415628)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               ebs (0.236602)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	1-114, - strand, RNAz p=0.551295
	432-589, - strand, RNAz p=0.852127
	739-975, - strand, RNAz p=0.983714
	748-1397, - strand, RNAz p=0.985924
	1016-1134, - strand, RNAz p=0.681778

	1-1524, gnl\|bosTau2\|chr16 (289745-291268)
	1-1524, gnl\|Hg17\|chr1 (200553384-200554905)
	1-1524, gnl\|Mm7\|chr1 (133522248-133520789)

	595-1506, gnl\|bosTau2\|chr15 (29293597-29292694)
	595-1506, gnl\|Hg17\|chr1 (200553968-200554892)
	595-1506, gnl\|Mm7\|chr1 (133521706-133520802)

	aor (0.781097)
	lun (0.752445)
	lyg (0.532411)
	pro (0.512033)
	lin (0.436808)
	spl (0.429553)
	nms (0.427716)
	cty (0.41632)
	tes (0.415628)
	thg (0.380373)
	sag (0.36543)
	gul (0.355177)
	rec (0.346141)
	spc (0.340097)
	tbr (0.308356)
	fat (0.294855)
	ski (0.29347)
	cte (0.29274)
	csk (0.281492)
	nca (0.273748)
	ova (0.258264)
	ret (0.257467)
	sug (0.254582)
	ebs (0.236602)
	hea (0.204499)
	nbm (0.198649)
	fcc (0.197785)
	ldo (0.194005)
	fty (0.17584)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	isp (0.150376)
	bfe (0.149858)
	ssp (0.13552)
	pla (0.133672)
	kid (0.129735)
	ese (0.126502)
	bla (0.124347)
	pgl (0.118483)
	ecc (0.115035)
	cbl (0.114797)