Non-Coding RNA Search

Ss1.1-Pig4-TMW8028N01.3

Sequence:


               
               GTTTACCCAGGATGCAGTGGGTGTATGCAGGTCTCTTGCTCTCTAGGCCTGTGTGTGTGT
GTGGGTGTGGGTGTGTGTGGGTGTGGTGTGGGGTGGGGGTGAGGGGGCGGCTGCTGGAGC
TTCTCTTTCCTTTTAACACGTATTCATTCCCCTGACCCCACAGATGCTTCCCTCCACACT
TTTTCTTTGCCTCCATTTCATCAGTTTTTTTTTTTTTTGTTCCTGCCCCTGTGGCCTCTT
GCCTCCCGGAACTCTCCTTTGCCTTCTCAACTTTCTCGCTGCTGTTGCCTGTTTGTTTCC
CCTTTCCTTCATTCTTTCCTGCAAAGGAGCCCTCACTCTGTATCTTTGTGGTTGGTGAGG
ACTTGGCCTCTCCTGCCTCACGCCCTCTCTGACCCTCCTTAGTTAGATGCCAGTCCCAAA
TAGGTCTTTTCTCATTTTAGGCCCACCACCACCTTGGTGTGGGGGCTTCAGGGACTAGCC
GGCCGAGGATGTTAGGAAGCAGCCTTGGAGGTTGCCTTGGTGCTGCTTGAGGCTCTGTCC
AGCAGGGGGCAGTAAGTGATCGTGGTAGGACCCTGGCTGCTAGGCCTTGGGCAGGGCTGT
CCTTTCTACATTCCCATTCCCCTGAAAGGTCTTTTGGGATTGGGTGTCTCATTCCATTTC
TGCCCACTCCCTCCCCTCCTCTCCTCGGGTCGGTTTAATTTTATGTTTTCCTTTGTTCCA
GCCTCTCTTCTCCCTGGGGATTTTCCCTATTCCCCCCCGAAAAGTTTGTGGTGTTGTAGT
GGTAACTGCAGTTCTGAACTGGTTTTTCTCTTCTTTTTTCCTCCTCTGGAATGTAGACTG
TATATGTTTAATAACTCACCTTCTCTCTCCTTGCTCAAAATGTGGGATACGCGATGACTG
TGACCCTCGTTGGAAATTAAACTTGTTTTATGCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTACCCAGGATGCAGTGGGTGTATGCAGGTCTCTTGCTCTCTAGGCCTGTGTGTGTGT
GTGGGTGTGGGTGTGTGTGGGTGTGGTGTGGGGTGGGGGTGAGGGGGCGGCTGCTGGAGC
TTCTCTTTCCTTTTAACACGTATTCATTCCCCTGACCCCACAGATGCTTCCCTCCACACT
TTTTCTTTGCCTCCATTTCATCAGTTTTTTTTTTTTTTGTTCCTGCCCCTGTGGCCTCTT
GCCTCCCGGAACTCTCCTTTGCCTTCTCAACTTTCTCGCTGCTGTTGCCTGTTTGTTTCC
CCTTTCCTTCATTCTTTCCTGCAAAGGAGCCCTCACTCTGTATCTTTGTGGTTGGTGAGG
ACTTGGCCTCTCCTGCCTCACGCCCTCTCTGACCCTCCTTAGTTAGATGCCAGTCCCAAA
TAGGTCTTTTCTCATTTTAGGCCCACCACCACCTTGGTGTGGGGGCTTCAGGGACTAGCC
GGCCGAGGATGTTAGGAAGCAGCCTTGGAGGTTGCCTTGGTGCTGCTTGAGGCTCTGTCC
AGCAGGGGGCAGTAAGTGATCGTGGTAGGACCCTGGCTGCTAGGCCTTGGGCAGGGCTGT
CCTTTCTACATTCCCATTCCCCTGAAAGGTCTTTTGGGATTGGGTGTCTCATTCCATTTC
TGCCCACTCCCTCCCCTCCTCTCCTCGGGTCGGTTTAATTTTATGTTTTCCTTTGTTCCA
GCCTCTCTTCTCCCTGGGGATTTTCCCTATTCCCCCCCGAAAAGTTTGTGGTGTTGTAGT
GGTAACTGCAGTTCTGAACTGGTTTTTCTCTTCTTTTTTCCTCCTCTGGAATGTAGACTG
TATATGTTTAATAACTCACCTTCTCTCTCCTTGCTCAAAATGTGGGATACGCGATGACTG
TGACCCTCGTTGGAAATTAAACTTGTTTTATGCAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               313-426, - strand, RNAz p=0.96686
               

               
               482-596, - strand, RNAz p=0.86394

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-426, - strand, RNAz p=0.96686
               

               
               482-596, - strand, RNAz p=0.86394

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-934, gnl|bosTau2|chr5 (22532407-22533337)
               

               
               3-934, gnl|Hg17|chr12 (47617156-47616259)
               

               
               3-934, gnl|Mm7|chr15 (98724175-98723128)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-934, gnl|bosTau2|chr5 (22532407-22533337)
               

               
               3-934, gnl|Hg17|chr12 (47617156-47616259)
               

               
               3-934, gnl|Mm7|chr15 (98724175-98723128)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               fcc (0.593354)
               

               
               fce (0.543183)
               

               
               ece (0.45861)
               

               
               cly (0.361925)
               

               
               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               sug (0.254582)
               

               
               ecc (0.23007)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               fce (0.543183)
               

               
               ece (0.45861)
               

               
               cly (0.361925)
               

               
               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               sug (0.254582)
               

               
               ecc (0.23007)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

	313-426, - strand, RNAz p=0.96686
	482-596, - strand, RNAz p=0.86394

	3-934, gnl\|bosTau2\|chr5 (22532407-22533337)
	3-934, gnl\|Hg17\|chr12 (47617156-47616259)
	3-934, gnl\|Mm7\|chr15 (98724175-98723128)

	fcc (0.593354)
	fce (0.543183)
	ece (0.45861)
	cly (0.361925)
	ebs (0.354904)
	fhi (0.339155)
	nje (0.33184)
	pty (0.285429)
	cga (0.279096)
	cov (0.264306)
	sug (0.254582)
	ecc (0.23007)
	fty (0.17584)
	fbs (0.175346)
	cki (0.165235)
	fco (0.157208)
	cli (0.152812)
	pla (0.133672)
	eep (0.122564)
	pgl (0.118483)
	jca (0.11396)