Non-Coding RNA Search

Ss1.1-Pig4-TMW8028N08.5

Sequence:


               
               ACTTTTCTGTACTGTTAAACTTCATTGTAATAAAATGAGAGAAAAGTTTATGCCTTTTTA
TTCATAACCCAGCTGTGGACCACTGCCTGAAAGGTTTGTACAGATGCATGCCACAGTAGA
TGTCCACATAATAAAATTCATAGCTACCAATGCAGTTTTGATATATCATTGGATTCTGTC
TTTGACTTGTAGGTTGTTCCTTAGCTGCATGTTTTAAACTGGACAGTATATGTAGAATTG
TGTGTTAGTCCTTCAGTTGACAGAAAAACTTAGCTATAGCGTATGAGTCGTTAACATGGG
TATGAAATCTTTATATTGTGTTACCTTTCCACCCTGCTTGGTGTCAATACGTGGTAGATA
TTACAGATACCTAAAATGTAAACCTTAATATTCCCTACTTATTGCTGATGATGTTTAGAG
CCTAGTGCCAGACCTATTCATTGCCTTCTGATTACTTTTGAGACTGAAGTACTGTGTGGA
CCTCAGAAGCTTTCAGGTGCAAACTTCTAGAAGCTTAGGTGCATGCAGTAATAGCCTTTT
GTGCTGTTAATATATTCTAAGTGTAATGGTTAACAGATGAATTTAAATTTTTTTATTTTA
TTATGTTCCCATATTATTACATTATTTCTTTGATTATATAGCTACTTTCTGTTATTAAGC
CTAAATGGCTTTTTCCTGTTAACCTTTTCACCCTTGGAAATCTGACTGTTGAACTGTATT
CTTGTGGAGAACTTTTCTGTAGAGATGTTTGCTATTATTTAAGTATCTTGTATTGCAAGT
CTTATGTAATATAACAATAGCTCTTGTTGACCTTTTTTTGGCATCCATTTTTTGATCTCT
TCTTTTGCAAAGTAGTTTATGGTTATTTAAGTATCATATGACCTATATACAAAGTGTAAT
TATTAATATAATGAACTCTAGTTTTTCTTCAATATGAAGTTAAGACTTCTAAGAAAATGA
TGTTTTTTTATAATCTTTATGAGAAGGTGTAGGTAAGAGACAGAGAATCTGAAATTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTTCTGTACTGTTAAACTTCATTGTAATAAAATGAGAGAAAAGTTTATGCCTTTTTA
TTCATAACCCAGCTGTGGACCACTGCCTGAAAGGTTTGTACAGATGCATGCCACAGTAGA
TGTCCACATAATAAAATTCATAGCTACCAATGCAGTTTTGATATATCATTGGATTCTGTC
TTTGACTTGTAGGTTGTTCCTTAGCTGCATGTTTTAAACTGGACAGTATATGTAGAATTG
TGTGTTAGTCCTTCAGTTGACAGAAAAACTTAGCTATAGCGTATGAGTCGTTAACATGGG
TATGAAATCTTTATATTGTGTTACCTTTCCACCCTGCTTGGTGTCAATACGTGGTAGATA
TTACAGATACCTAAAATGTAAACCTTAATATTCCCTACTTATTGCTGATGATGTTTAGAG
CCTAGTGCCAGACCTATTCATTGCCTTCTGATTACTTTTGAGACTGAAGTACTGTGTGGA
CCTCAGAAGCTTTCAGGTGCAAACTTCTAGAAGCTTAGGTGCATGCAGTAATAGCCTTTT
GTGCTGTTAATATATTCTAAGTGTAATGGTTAACAGATGAATTTAAATTTTTTTATTTTA
TTATGTTCCCATATTATTACATTATTTCTTTGATTATATAGCTACTTTCTGTTATTAAGC
CTAAATGGCTTTTTCCTGTTAACCTTTTCACCCTTGGAAATCTGACTGTTGAACTGTATT
CTTGTGGAGAACTTTTCTGTAGAGATGTTTGCTATTATTTAAGTATCTTGTATTGCAAGT
CTTATGTAATATAACAATAGCTCTTGTTGACCTTTTTTTGGCATCCATTTTTTGATCTCT
TCTTTTGCAAAGTAGTTTATGGTTATTTAAGTATCATATGACCTATATACAAAGTGTAAT
TATTAATATAATGAACTCTAGTTTTTCTTCAATATGAAGTTAAGACTTCTAAGAAAATGA
TGTTTTTTTATAATCTTTATGAGAAGGTGTAGGTAAGAGACAGAGAATCTGAAATTTTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               469-564, + strand, RNAz p=0.99932

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               469-564, + strand, RNAz p=0.99932

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1020, gnl|bosTau2|chr19 (12517631-12518671)
               

               
               1-1020, gnl|Hg17|chr17 (27721428-27722448)
               

               
               1-1020, gnl|Mm7|chr11 (80477672-80478596)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1020, gnl|bosTau2|chr19 (12517631-12518671)
               

               
               1-1020, gnl|Hg17|chr17 (27721428-27722448)
               

               
               1-1020, gnl|Mm7|chr11 (80477672-80478596)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fco (0.157208)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               ret (0.128733)

	1-1020, gnl\|bosTau2\|chr19 (12517631-12518671)
	1-1020, gnl\|Hg17\|chr17 (27721428-27722448)
	1-1020, gnl\|Mm7\|chr11 (80477672-80478596)