Ss1.1-Pig4-TMW8028N18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGCTCGTCCACCCCACGGGACTGAGCACGGGGGCTCTGATGGCCATCCTTCTGTGCAT CGTGACCCTACTAGTGACAGTGGTGTTGTTTGCAGCTCTGAGGCGGCAGCGGAAAAAAGA ACCTTGGATCATTTCCAAAGAGGACATCAGAGACAACATTGTCAGTTACAACGACGAAGG TGGCGGAGAAGAGGACACGCAGGCCTTGGATATTGGCACCCTGAGGAATCCTGAAGCCAT AGAGGACAGCAAATTACGCAGGGACATCGTGCCCGAAGCCCTTTTTCTACCCCGACGGAC TCCAGCGGCGCGTGACAACACCGACGTCCGAGATTTCATTAACCAAAGGTTAAAGGAAAA TGACACAGACCCCACCGCCCCGCCCTACGACTCCTTGGCCACCTACGCCTACGAGGGCAC CGGCTCGGTGGCCGAGTCCCTGAGCTCGCTGGAGTCGGCGACCACGGATGGAGATCAAGA CTACGATTACCTGAGTGACTGGGGGCCTCGGTTCAAAAAGCTTGCAGATATGTACGGAGG GGTGGACAGTGACAAGGACTCCTAATATGTTGCCTTTTTCATTTTCCAGTACAACACTGA AACATGTGAAGTGGCTATTTCTTTCTATTTATCCACTGCTCCGTGAAGGGTTCTCTGTTC TAGCCGTTCCAACAGTCAATGGCTGCAGTCCGTGTGGATCCAGTGTTAGAGACGTTTTTC TAGTACAGTTTTACGAGCTTCCGAGAGGCAAATGTTTATTTTTTAGTGCATCTGGTTAAC CATGTCAGCTCAACAGGCGCCGTGCTGGGGGAGAGGATGGGGAGTCATCTTCTCCTGTGC TCTCTTAGGGCAAGTTTGGAATCTGCTTAATTCCACGGACCTGGTCTCTTAGGACATCGC ATTGACTCATGTTCCCGCTGACTGCTCTGTACATTTCACTTGCTAACGGGATGAGGGATT GTGCTTTAATTATAAAAATATAGTTTTAGTAAAAGAAATAAGGGAGGAACCACTGTTCCT GGTACATCAGCTCACAAGGAGATGATGAACTGTGGATGGGTGTGTTTTTCTATCACAAAG AATTTAAAATGATATTTGCCAGTCTTTGCCCTTCACATCTTTTTCTGGCACCAATGACTA TTCAAAACATCAGATCTACCAACGTTTTGAGATTCTCCTTCCTTTTTAGGAAATGATGCC AATTAAGTGGTAACATTCAAAAATAACAACCAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGCTCGTCCACCCCACGGGACTGAGCACGGGGGCTCTGATGGCCATCCTTCTGTGCAT CGTGACCCTACTAGTGACAGTGGTGTTGTTTGCAGCTCTGAGGCGGCAGCGGAAAAAAGA ACCTTGGATCATTTCCAAAGAGGACATCAGAGACAACATTGTCAGTTACAACGACGAAGG TGGCGGAGAAGAGGACACGCAGGCCTTGGATATTGGCACCCTGAGGAATCCTGAAGCCAT AGAGGACAGCAAATTACGCAGGGACATCGTGCCCGAAGCCCTTTTTCTACCCCGACGGAC TCCAGCGGCGCGTGACAACACCGACGTCCGAGATTTCATTAACCAAAGGTTAAAGGAAAA TGACACAGACCCCACCGCCCCGCCCTACGACTCCTTGGCCACCTACGCCTACGAGGGCAC CGGCTCGGTGGCCGAGTCCCTGAGCTCGCTGGAGTCGGCGACCACGGATGGAGATCAAGA CTACGATTACCTGAGTGACTGGGGGCCTCGGTTCAAAAAGCTTGCAGATATGTACGGAGG GGTGGACAGTGACAAGGACTCCTAATATGTTGCCTTTTTCATTTTCCAGTACAACACTGA AACATGTGAAGTGGCTATTTCTTTCTATTTATCCACTGCTCCGTGAAGGGTTCTCTGTTC TAGCCGTTCCAACAGTCAATGGCTGCAGTCCGTGTGGATCCAGTGTTAGAGACGTTTTTC TAGTACAGTTTTACGAGCTTCCGAGAGGCAAATGTTTATTTTTTAGTGCATCTGGTTAAC CATGTCAGCTCAACAGGCGCCGTGCTGGGGGAGAGGATGGGGAGTCATCTTCTCCTGTGC TCTCTTAGGGCAAGTTTGGAATCTGCTTAATTCCACGGACCTGGTCTCTTAGGACATCGC ATTGACTCATGTTCCCGCTGACTGCTCTGTACATTTCACTTGCTAACGGGATGAGGGATT GTGCTTTAATTATAAAAATATAGTTTTAGTAAAAGAAATAAGGGAGGAACCACTGTTCCT GGTACATCAGCTCACAAGGAGATGATGAACTGTGGATGGGTGTGTTTTTCTATCACAAAG AATTTAAAATGATATTTGCCAGTCTTTGCCCTTCACATCTTTTTCTGGCACCAATGACTA TTCAAAACATCAGATCTACCAACGTTTTGAGATTCTCCTTCCTTTTTAGGAAATGATGCC AATTAAGTGGTAACATTCAAAAATAACAACCAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 68-1236, gnl|bosTau2|chr20 (27619846-27618663) | |
| 68-1236, gnl|Hg17|chr5 (31358675-31359811) | |
| 68-1236, gnl|Mm7|chr15 (13093520-13092318) | |
| 334-562, gnl|bosTau2|chr18 (14343962-14343734) | |
| 334-562, gnl|Hg17|chr16 (67289581-67289810) | |
| 334-562, gnl|Mm7|chr8 (105153872-105154114) | |
| 362-540, gnl|bosTau2|chr13 (36332802-36332627) | |
| 362-540, gnl|canFam2|chr24 (49110510-49110721) | |
| 362-540, gnl|danRer3|chr15 (29380366-29380155) | |
| 362-540, gnl|dasNov1|scaffold_52742 (9965-9760) | |
| 362-540, gnl|echTel1|scaffold_287341 (97022-97220) | |
| 362-540, gnl|fr1|chrUn (148012371-148012582) | |
| 362-540, gnl|galGal2|chr20 (7378550-7378757) | |
| 362-540, gnl|hg17|chr20 (59945188-59945399) | |
| 362-540, gnl|Hg17|chr20 (59945205-59945380) | |
| 362-540, gnl|loxAfr1|scaffold_19933 (3885-4083) | |
| 362-540, gnl|mm7|chr2 (180396623-180396834) | |
| 362-540, gnl|Mm7|chr2 (180396640-180396815) | |
| 362-540, gnl|monDom2|scaffold_1 (179083825-179084036) | |
| 362-540, gnl|oryCun1|scaffold_175042 (44959-45168) | |
| 362-540, gnl|panTro1|chr21 (62951465-62951676) | |
| 362-540, gnl|rheMac2|chr10 (2593016-2592806) | |
| 362-540, gnl|rn3|chr3 (168885207-168885418) | |
| 362-540, gnl|tetNig1|chr15 (6793696-6793491) | |
| 362-540, gnl|xenTro1|scaffold_220 (321613-321824) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-1236, gnl|bosTau2|chr20 (27619846-27618663) | |
| 68-1236, gnl|Hg17|chr5 (31358675-31359811) | |
| 68-1236, gnl|Mm7|chr15 (13093520-13092318) | |
| 334-562, gnl|bosTau2|chr18 (14343962-14343734) | |
| 334-562, gnl|Hg17|chr16 (67289581-67289810) | |
| 334-562, gnl|Mm7|chr8 (105153872-105154114) | |
| 362-540, gnl|bosTau2|chr13 (36332802-36332627) | |
| 362-540, gnl|canFam2|chr24 (49110510-49110721) | |
| 362-540, gnl|danRer3|chr15 (29380366-29380155) | |
| 362-540, gnl|dasNov1|scaffold_52742 (9965-9760) | |
| 362-540, gnl|echTel1|scaffold_287341 (97022-97220) | |
| 362-540, gnl|fr1|chrUn (148012371-148012582) | |
| 362-540, gnl|galGal2|chr20 (7378550-7378757) | |
| 362-540, gnl|hg17|chr20 (59945188-59945399) | |
| 362-540, gnl|Hg17|chr20 (59945205-59945380) | |
| 362-540, gnl|loxAfr1|scaffold_19933 (3885-4083) | |
| 362-540, gnl|mm7|chr2 (180396623-180396834) | |
| 362-540, gnl|Mm7|chr2 (180396640-180396815) | |
| 362-540, gnl|monDom2|scaffold_1 (179083825-179084036) | |
| 362-540, gnl|oryCun1|scaffold_175042 (44959-45168) | |
| 362-540, gnl|panTro1|chr21 (62951465-62951676) | |
| 362-540, gnl|rheMac2|chr10 (2593016-2592806) | |
| 362-540, gnl|rn3|chr3 (168885207-168885418) | |
| 362-540, gnl|tetNig1|chr15 (6793696-6793491) | |
| 362-540, gnl|xenTro1|scaffold_220 (321613-321824) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| ova (0.129132) | |
| cty (0.10408) |