Non-Coding RNA Search

Ss1.1-Pig4-TMW8028N22.3.5

Sequence:


               
               CTGAATTGCTTCCAGCATACAACAAACTACCTTAAAATTATCTTTAAAATCTATTAAATA
TATTTTCGTGGTTAATGTCACTGAAATAGTATGTTTTCATCAACTACATCGTTGTGTTTA
TCACAGTTAAACTTGGCATCTCTTGGCAGGGTCCTATTTGATTTCATTTGCCATCAAAAT
ATATTTACATGCTTGGTTCTTGACTTTATTTTCTGTTATAAACATCTGTTGTGACAACCA
CATACATGGTAATAAATTGGGTAAGAATACGATGACTAAAAGTTGTTCTCATGCCTAATA
CTGGTCTTCATGCATTTATCACACTTTTTTGAAAGACAGTAACACTCATCCCATGCAATT
GTTGTATTTAATTTAGGATTTTTCTGTGAGTTCAAATTGTTTGTAAGAACTTATAGACTG
TTATAAGTATTGATTTTCAAAGACTAAAGAGTACAAGAGATCAAGAAAAAAGCTTTTAAA
CTCATTCTGCTTAATTTTTGCTGTGCTCATGAAGATTACTGTAGTTTGTCACTAAAACAA
AATTAAAGTAAGTCTTGCTCTAGTGTTGAGTAACAAGAATGAATTTTGCATTAATGGTTT
CTTTTTATCTTTTTTTCATTTGAACAACCAGCATTACTGCCAAACACCAATCGTGGTCCA
TATTTGTAACGGTTTTTAACATGACATAGTTAGCAAGTTTGATTGAAGAGATTTTTAGGT
CCCGGGCCTATAAGATTTTAGTATGATCTTTTTTCATGTTTCTAATGCTTGAGGCATTAT
TGCTTATCTTGGAAAAAAAAAAGACAGTGTTGCTGCCATTTGTAAGTTTTCCTATAATAT
TCCCTTTGTGAACTTTAAAACTGGCCTTACGGGGTTCAAATAGGCAGTATCCCTTTAAGT
GACCTTTGCAACCCAAGTGTTACTTGCTTATTTGATGCTCTCTTGTATTTTACATCTCAT
TTAAATATTTCTCTCCACCAAAGCTTACATTTTATGTCTTAATTTAAAACCCTAAACTAT
TCCATTAATCTTGTTAGTTGACATTAAAGTGTCTAGAGGTACAGGGTCTGACCTAGTGGG
AAAAAAAAAAAAGGATGTCATGGTTTTTTGTTTTTTTTTTAATGTGTAGCATAGAATGAT
TGCTTCACTTCCCCACAATTTCAAATATTTTACAATTATCTGGAATATGTGTTATTTTCC
CATAGCAAAATGTTACTATTGCTAATATTCCATGTACATTTCTGTAAAGAGCAAACTAAT
AAAGCAAAAGTATGAAATTTCTTGATTTCTTGAGAAAACTCCAGCATTTTAAAGTTTTAG
GCAACCTTTACCAACAGCTTCATGTGCTTTATTTCTAGTTCACATGAGTAACTCAAAGAA
ATTCTACTGAGACTAATGGGATACTGTCTTGTATAGATGCCAATCAAGTTTACAGTGTGA
CCTGACAAAGCAGTCTTTTCTGTTGTGCTGTATGATTGTTGGATCATGCTATTAGGGATA
CTTTTATTGAAATGCTCAGTGTGCATCCATGCAAAAGGCCAAATGGCTTTGTGAACAAAA
GATCTTTTCTCCCCTTTATTATGTTCTCTTGACACTTTTGTGGAAATTAACTAGCCTGAT
AAAAACATTTTGTAAAAATTTGTATAATAATATTATAAAAATATTTATAATCCCAGAAAA
TGTTGTGTTAAATCTTGTGCAAAAACAGTATATTCAGAATAAAAGTTTATCATTTAAAGT
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAATTGCTTCCAGCATACAACAAACTACCTTAAAATTATCTTTAAAATCTATTAAATA
TATTTTCGTGGTTAATGTCACTGAAATAGTATGTTTTCATCAACTACATCGTTGTGTTTA
TCACAGTTAAACTTGGCATCTCTTGGCAGGGTCCTATTTGATTTCATTTGCCATCAAAAT
ATATTTACATGCTTGGTTCTTGACTTTATTTTCTGTTATAAACATCTGTTGTGACAACCA
CATACATGGTAATAAATTGGGTAAGAATACGATGACTAAAAGTTGTTCTCATGCCTAATA
CTGGTCTTCATGCATTTATCACACTTTTTTGAAAGACAGTAACACTCATCCCATGCAATT
GTTGTATTTAATTTAGGATTTTTCTGTGAGTTCAAATTGTTTGTAAGAACTTATAGACTG
TTATAAGTATTGATTTTCAAAGACTAAAGAGTACAAGAGATCAAGAAAAAAGCTTTTAAA
CTCATTCTGCTTAATTTTTGCTGTGCTCATGAAGATTACTGTAGTTTGTCACTAAAACAA
AATTAAAGTAAGTCTTGCTCTAGTGTTGAGTAACAAGAATGAATTTTGCATTAATGGTTT
CTTTTTATCTTTTTTTCATTTGAACAACCAGCATTACTGCCAAACACCAATCGTGGTCCA
TATTTGTAACGGTTTTTAACATGACATAGTTAGCAAGTTTGATTGAAGAGATTTTTAGGT
CCCGGGCCTATAAGATTTTAGTATGATCTTTTTTCATGTTTCTAATGCTTGAGGCATTAT
TGCTTATCTTGGAAAAAAAAAAGACAGTGTTGCTGCCATTTGTAAGTTTTCCTATAATAT
TCCCTTTGTGAACTTTAAAACTGGCCTTACGGGGTTCAAATAGGCAGTATCCCTTTAAGT
GACCTTTGCAACCCAAGTGTTACTTGCTTATTTGATGCTCTCTTGTATTTTACATCTCAT
TTAAATATTTCTCTCCACCAAAGCTTACATTTTATGTCTTAATTTAAAACCCTAAACTAT
TCCATTAATCTTGTTAGTTGACATTAAAGTGTCTAGAGGTACAGGGTCTGACCTAGTGGG
AAAAAAAAAAAAGGATGTCATGGTTTTTTGTTTTTTTTTTAATGTGTAGCATAGAATGAT
TGCTTCACTTCCCCACAATTTCAAATATTTTACAATTATCTGGAATATGTGTTATTTTCC
CATAGCAAAATGTTACTATTGCTAATATTCCATGTACATTTCTGTAAAGAGCAAACTAAT
AAAGCAAAAGTATGAAATTTCTTGATTTCTTGAGAAAACTCCAGCATTTTAAAGTTTTAG
GCAACCTTTACCAACAGCTTCATGTGCTTTATTTCTAGTTCACATGAGTAACTCAAAGAA
ATTCTACTGAGACTAATGGGATACTGTCTTGTATAGATGCCAATCAAGTTTACAGTGTGA
CCTGACAAAGCAGTCTTTTCTGTTGTGCTGTATGATTGTTGGATCATGCTATTAGGGATA
CTTTTATTGAAATGCTCAGTGTGCATCCATGCAAAAGGCCAAATGGCTTTGTGAACAAAA
GATCTTTTCTCCCCTTTATTATGTTCTCTTGACACTTTTGTGGAAATTAACTAGCCTGAT
AAAAACATTTTGTAAAAATTTGTATAATAATATTATAAAAATATTTATAATCCCAGAAAA
TGTTGTGTTAAATCTTGTGCAAAAACAGTATATTCAGAATAAAAGTTTATCATTTAAAGT
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               836-988, + strand, RNAz p=0.868237

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               836-988, + strand, RNAz p=0.868237

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1740, gnl|bosTau2|chr4 (17481443-17483166)
               

               
               4-1740, gnl|Hg17|chr7 (81222097-81220413)
               

               
               4-1740, gnl|Mm7|chr5 (15380638-15382252)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1740, gnl|bosTau2|chr4 (17481443-17483166)
               

               
               4-1740, gnl|Hg17|chr7 (81222097-81220413)
               

               
               4-1740, gnl|Mm7|chr5 (15380638-15382252)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               nms (0.855432)
               

               
               fco (0.78604)
               

               
               vin (0.665115)
               

               
               tbr (0.616713)
               

               
               ldo (0.485013)
               

               
               hea (0.408998)
               

               
               fcc (0.39557)
               

               
               ret (0.3862)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ese (0.253004)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ecc (0.115035)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.855432)
               

               
               fco (0.78604)
               

               
               vin (0.665115)
               

               
               tbr (0.616713)
               

               
               ldo (0.485013)
               

               
               hea (0.408998)
               

               
               fcc (0.39557)
               

               
               ret (0.3862)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ese (0.253004)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ecc (0.115035)

	4-1740, gnl\|bosTau2\|chr4 (17481443-17483166)
	4-1740, gnl\|Hg17\|chr7 (81222097-81220413)
	4-1740, gnl\|Mm7\|chr5 (15380638-15382252)

	nms (0.855432)
	fco (0.78604)
	vin (0.665115)
	tbr (0.616713)
	ldo (0.485013)
	hea (0.408998)
	fcc (0.39557)
	ret (0.3862)
	bfe (0.299715)
	fat (0.294855)
	ese (0.253004)
	liv (0.146284)
	lnt (0.142308)
	ssp (0.13552)
	ste (0.135208)
	ecc (0.115035)