Non-Coding RNA Search

Ss1.1-Pig4-TMW8028O18.3

Sequence:


               
               CGGCAACCCACTGTTAAGTAAGACTTTTTTTCGTTTTACAAAATGGATCAAGATGCTTGT
TTTGGATGAATTCAGTAAAAATGTTGAGCCAAAGGATTAAAGGTCAAATCCATGAGATTT
ACCGGAAATCAAATCTGGATTCAGGCTGTATTGTTTTCTGCCTTAATGCTAATCGATATA
TTGAAAATCATCAAAAAGTTCCCAAGAGATCCATTTCAAATTCCGGTGAAGAAGGAAGAA
CTGAACTTTGAAAAGGCCAAAATGTTACAATAATTTTGAAAGAGGAATTGTTCAGAGTTG
ATTTGGGAGGAAAGCAATGGCCGTAAGTGTTGAAGAAGACAAGGAGGTTCTTTGTGATAC
TGATACTTTCTACAATACTGCAGTGGAGGAAACGCCAGTGGGTATGACGGACCTTATTAA
ATCCTGGGATGAAATGGTTTTGAATGTGATGCTTGCTGTTGCAGTGCAGGTGATCATGAT
GTGCACTGTGCTTCTTTTGCAGGGGGTGGGGGGGTTGCGGGAGGAATATTTGAAGCTTGT
TTCAATGCTCATAACGGATCAAAAATATAGATTTTGCTGCAAAGCAACTTTAGTCATGAG
CTCTTTTGAGGAAAGTCATTGCCTTTATCCTCTTTAGAGTTAGATTGTTGGTTGGGTCTA
AGGGATTGTGAACATCTTCCTTAGCAATTTATTTCCTAGTTATCTAAATAATAATTATAT
TGAGTATTTGTTATCATCTAATAATATACTTACAGACTGAAAGATATGTGCCTTCAGTGT
TTAAACTAGTGTATCTGCCATTATTGTGTTAGTCATCAGGCTGAGTAGAATGAACTTTAA
AATTATTTTTTAAGAAAATATTTGAATTCATTTTGTTTGGTATCATTTTTATTCAGTAAG
GCATTTATTTTGTTAGTGGTAAGTGTAAACTAGAGTCTTTTGCTAAGCACCAGCAACAAT
CATATCCTATGGTTAAATCTCAGAAAAATCGCTATATTGCATATTGAATGTTCAGCAAAT
TACAATGAAGTATATTTTTCTTTAAAAGTGTTTGGCCTTTATTCCTAAACATTTGTACTT
CTTGCCATAACTTCATATTTTCAAAGGAAAAAGATAAAACAGCACTCTAAATATTTTTTC
TAGTCACAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCAACCCACTGTTAAGTAAGACTTTTTTTCGTTTTACAAAATGGATCAAGATGCTTGT
TTTGGATGAATTCAGTAAAAATGTTGAGCCAAAGGATTAAAGGTCAAATCCATGAGATTT
ACCGGAAATCAAATCTGGATTCAGGCTGTATTGTTTTCTGCCTTAATGCTAATCGATATA
TTGAAAATCATCAAAAAGTTCCCAAGAGATCCATTTCAAATTCCGGTGAAGAAGGAAGAA
CTGAACTTTGAAAAGGCCAAAATGTTACAATAATTTTGAAAGAGGAATTGTTCAGAGTTG
ATTTGGGAGGAAAGCAATGGCCGTAAGTGTTGAAGAAGACAAGGAGGTTCTTTGTGATAC
TGATACTTTCTACAATACTGCAGTGGAGGAAACGCCAGTGGGTATGACGGACCTTATTAA
ATCCTGGGATGAAATGGTTTTGAATGTGATGCTTGCTGTTGCAGTGCAGGTGATCATGAT
GTGCACTGTGCTTCTTTTGCAGGGGGTGGGGGGGTTGCGGGAGGAATATTTGAAGCTTGT
TTCAATGCTCATAACGGATCAAAAATATAGATTTTGCTGCAAAGCAACTTTAGTCATGAG
CTCTTTTGAGGAAAGTCATTGCCTTTATCCTCTTTAGAGTTAGATTGTTGGTTGGGTCTA
AGGGATTGTGAACATCTTCCTTAGCAATTTATTTCCTAGTTATCTAAATAATAATTATAT
TGAGTATTTGTTATCATCTAATAATATACTTACAGACTGAAAGATATGTGCCTTCAGTGT
TTAAACTAGTGTATCTGCCATTATTGTGTTAGTCATCAGGCTGAGTAGAATGAACTTTAA
AATTATTTTTTAAGAAAATATTTGAATTCATTTTGTTTGGTATCATTTTTATTCAGTAAG
GCATTTATTTTGTTAGTGGTAAGTGTAAACTAGAGTCTTTTGCTAAGCACCAGCAACAAT
CATATCCTATGGTTAAATCTCAGAAAAATCGCTATATTGCATATTGAATGTTCAGCAAAT
TACAATGAAGTATATTTTTCTTTAAAAGTGTTTGGCCTTTATTCCTAAACATTTGTACTT
CTTGCCATAACTTCATATTTTCAAAGGAAAAAGATAAAACAGCACTCTAAATATTTTTTC
TAGTCACAAAAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               594-1047, gnl|bosTau2|chr27 (19887870-19887389)
               

               
               594-1047, gnl|Hg17|chr3 (187989913-187990388)
               

               
               594-1047, gnl|Mm7|chr15 (71877893-71878385)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               594-1047, gnl|bosTau2|chr27 (19887870-19887389)
               

               
               594-1047, gnl|Hg17|chr3 (187989913-187990388)
               

               
               594-1047, gnl|Mm7|chr15 (71877893-71878385)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               vin (0.332557)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               cki (0.165235)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               cki (0.165235)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ldo (0.0970026)

	594-1047, gnl\|bosTau2\|chr27 (19887870-19887389)
	594-1047, gnl\|Hg17\|chr3 (187989913-187990388)
	594-1047, gnl\|Mm7\|chr15 (71877893-71878385)

	vin (0.332557)
	cbe (0.239234)
	ece (0.229305)
	nms (0.213858)
	cki (0.165235)
	isp (0.150376)
	lin (0.145603)
	pty (0.142714)
	ldo (0.0970026)