Ss1.1-Pig4-TMW8028O19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAATCTTTCTGAGGAAGCAGCAAAACAAATGAGAAGCAGAGGAAAAATGCTGAAGACA AAAGATGGTAAACTACCATTTTCTGCTATGGGTGTGAGCTCTGTTATCCACCCCAAGAAT CCTCATGCTCCTACTATCCATTTCAACTACAGATACTTTGAAATCGAAGAAGCCGATGGT AACAAGCAGTGGTGGTTTGGTGGTGGATGTGACCTTACCCCAACATACTTGAACCAAGAG GATGCAGTCCATTTTCATAGGACTCTAAAGGAGGCTTGTGACCAGCATGGTCCAGATCTC TACCCCAAATATAAAAAATGGTGTGATGATTACTTTTTTATAGCCCACCGTGGGGAGCGG AGAGGCATTGGTGGTATCTTTTTTGATGACCTTGACTCTCCATCCAAGGAGGAGGTATTC CGATTTGTGCAGAGCTGTACCCAGGCCATCATTCCTTCTTATATTCCCCTTGTGAAAAAG CACTGTAATGACTCCTTCACCCCCCAGGAGAAGTTGTGGCAGCAGCTCCGGAGAGGACGG TATGTAGAATTTAACCTGCTGTATGATCGAGGTACAAAGTTTGGCCTCTTCACTCCAGGA TCCAGAATTGAAAGCATCTTGATGTCTTTACCTTTAACTGCCCGATGGGAGTACATGCAT TCACCCTCAGAGAACTCCAAAGAAGCTGAAATTCTGGAAGTTCTGCGCCATCCGAGGGAC TGGGTGCATTGATGCAGGCAGAGCAGCCTTCCTGGGGTTTGGGGACACACAGTGTGTACC CCCACTCCACTGACCGGCATCACCACCACCACTGTGTGGCACGTAGTAGTTTCCTGTGTC TTAGAGCGCCGGTCTTCTCCACCCTGGAGTCTGCCTCTTTGACAGGTGGTGAAATGTAAT TTAAGCATCACAAGGTTCTCTTGGTTGCTGTTGGTGATGGGTTGGTGAGATGACAGCTGT CAGAATCAATTGGTTGATATAAAAAACTCATACCTTTGGAATCATTTTATATGACTAGTT TACAAACAATGACATAGAGTGTACAAGAATTGGTCAAGGGGATCTAAATACTACAGTTTG TATAGGAAACGTCTTATGTTATTTTTGTTTCATATATGTTTTAAAGGTTTAGTTTCTGCC ACATAAATCTGTTGTGGAATAAATTTTATTTTCCTTAATTCAGTGAGACTTACTAGTAAT TTTAGAATGCAACTGGAAATGAAGGTAAAAACTTCACTTTGTCATTACTGAAGTTTTCTT CAGTCATTGATCATAATTTTTATACCTTTCTCTAGAGATCGTAATATTATAAAATATTCA TCTTTATAATGATAGGTATTTAGAAACACTTGAAATGTTCTTAATCTCTGTGTTACAATG GAATGATTACCTGTAGTTGTTAACTCTAAAGTGACATCACCGTTATTTAAACAAGAGACA TTAAGTTGTAATGTTTAGGAACTACAATTTGTTGATATTGGGGTTCTCTGTACCTTTGAA TGTGAAAGCTTATAACCTTGGATTCTGATTTGTAAAGATTTCTGTTCCAGACATTTCTAT ATGGAGGTGTAGACTAAGAACAATCCTGGGGATGTGAATTTAGAAATGCTTCTCGTTAGG GAAATGAGAAATGTTTACTTCTTTAATTAAAGCAGACATGAGTATGAAAAGCACATAGGC ATTTTACAAATATATTTCTTTGGAGATGGACTAATTGAAATTGTCCTTTTTAATAGAGAT TCTATAACTCTTATTTTTGCTCTCGAGAAAATCACAACAAAGTTCTTAATAAGACTTCTT TGTTCATGTAGTAATATGAATGTATTTTATTCATACTATAATGAAGTTTGTAAGGAATAG AAAATCTTCCTACCTGTTATTAAGCATTATTTTGGAATATGTTGAATATATGATTGTATG GGATTCTAGGGCTAGAAAATGTATGAATTCTTCAGCTGTCTTACGAGATGCACTCATAAA TTTTATTATGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAATCTTTCTGAGGAAGCAGCAAAACAAATGAGAAGCAGAGGAAAAATGCTGAAGACA AAAGATGGTAAACTACCATTTTCTGCTATGGGTGTGAGCTCTGTTATCCACCCCAAGAAT CCTCATGCTCCTACTATCCATTTCAACTACAGATACTTTGAAATCGAAGAAGCCGATGGT AACAAGCAGTGGTGGTTTGGTGGTGGATGTGACCTTACCCCAACATACTTGAACCAAGAG GATGCAGTCCATTTTCATAGGACTCTAAAGGAGGCTTGTGACCAGCATGGTCCAGATCTC TACCCCAAATATAAAAAATGGTGTGATGATTACTTTTTTATAGCCCACCGTGGGGAGCGG AGAGGCATTGGTGGTATCTTTTTTGATGACCTTGACTCTCCATCCAAGGAGGAGGTATTC CGATTTGTGCAGAGCTGTACCCAGGCCATCATTCCTTCTTATATTCCCCTTGTGAAAAAG CACTGTAATGACTCCTTCACCCCCCAGGAGAAGTTGTGGCAGCAGCTCCGGAGAGGACGG TATGTAGAATTTAACCTGCTGTATGATCGAGGTACAAAGTTTGGCCTCTTCACTCCAGGA TCCAGAATTGAAAGCATCTTGATGTCTTTACCTTTAACTGCCCGATGGGAGTACATGCAT TCACCCTCAGAGAACTCCAAAGAAGCTGAAATTCTGGAAGTTCTGCGCCATCCGAGGGAC TGGGTGCATTGATGCAGGCAGAGCAGCCTTCCTGGGGTTTGGGGACACACAGTGTGTACC CCCACTCCACTGACCGGCATCACCACCACCACTGTGTGGCACGTAGTAGTTTCCTGTGTC TTAGAGCGCCGGTCTTCTCCACCCTGGAGTCTGCCTCTTTGACAGGTGGTGAAATGTAAT TTAAGCATCACAAGGTTCTCTTGGTTGCTGTTGGTGATGGGTTGGTGAGATGACAGCTGT CAGAATCAATTGGTTGATATAAAAAACTCATACCTTTGGAATCATTTTATATGACTAGTT TACAAACAATGACATAGAGTGTACAAGAATTGGTCAAGGGGATCTAAATACTACAGTTTG TATAGGAAACGTCTTATGTTATTTTTGTTTCATATATGTTTTAAAGGTTTAGTTTCTGCC ACATAAATCTGTTGTGGAATAAATTTTATTTTCCTTAATTCAGTGAGACTTACTAGTAAT TTTAGAATGCAACTGGAAATGAAGGTAAAAACTTCACTTTGTCATTACTGAAGTTTTCTT CAGTCATTGATCATAATTTTTATACCTTTCTCTAGAGATCGTAATATTATAAAATATTCA TCTTTATAATGATAGGTATTTAGAAACACTTGAAATGTTCTTAATCTCTGTGTTACAATG GAATGATTACCTGTAGTTGTTAACTCTAAAGTGACATCACCGTTATTTAAACAAGAGACA TTAAGTTGTAATGTTTAGGAACTACAATTTGTTGATATTGGGGTTCTCTGTACCTTTGAA TGTGAAAGCTTATAACCTTGGATTCTGATTTGTAAAGATTTCTGTTCCAGACATTTCTAT ATGGAGGTGTAGACTAAGAACAATCCTGGGGATGTGAATTTAGAAATGCTTCTCGTTAGG GAAATGAGAAATGTTTACTTCTTTAATTAAAGCAGACATGAGTATGAAAAGCACATAGGC ATTTTACAAATATATTTCTTTGGAGATGGACTAATTGAAATTGTCCTTTTTAATAGAGAT TCTATAACTCTTATTTTTGCTCTCGAGAAAATCACAACAAAGTTCTTAATAAGACTTCTT TGTTCATGTAGTAATATGAATGTATTTTATTCATACTATAATGAAGTTTGTAAGGAATAG AAAATCTTCCTACCTGTTATTAAGCATTATTTTGGAATATGTTGAATATATGATTGTATG GGATTCTAGGGCTAGAAAATGTATGAATTCTTCAGCTGTCTTACGAGATGCACTCATAAA TTTTATTATGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1603-1694, - strand, RNAz p=0.999942 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1603-1694, - strand, RNAz p=0.999942 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 67-182, gnl|bosTau2|chr1 (22432856-22432741) | |
| 67-182, gnl|canFam2|chr33 (8429805-8429962) | |
| 67-182, gnl|danRer3|chr8 (13871896-13872026) | |
| 67-182, gnl|dasNov1|scaffold_20774 (9225-9381) | |
| 67-182, gnl|echTel1|scaffold_279291 (146389-146536) | |
| 67-182, gnl|fr1|chrUn (153016909-153016791) | |
| 67-182, gnl|galGal2|chr1 (78253314-78253459) | |
| 67-182, gnl|hg17|chr3 (99792145-99792304) | |
| 67-182, gnl|Hg17|chr3 (99792277-99792162) | |
| 67-182, gnl|mm7|chr16 (58609623-58609469) | |
| 67-182, gnl|Mm7|chr16 (58609493-58609608) | |
| 67-182, gnl|monDom2|scaffold_25 (19343446-19343594) | |
| 67-182, gnl|oryCun1|scaffold_177040 (50998-50836) | |
| 67-182, gnl|panTro1|chr2 (100978285-100978444) | |
| 67-182, gnl|rheMac2|chr2 (18798428-18798587) | |
| 67-182, gnl|rn3|chr11 (42813592-42813746) | |
| 67-182, gnl|tetNig1|chr1 (11776205-11776332) | |
| 67-182, gnl|xenTro1|scaffold_72 (40537-40687) | |
| 320-541, gnl|bosTau2|chr1 (22429843-22429622) | |
| 320-541, gnl|Hg17|chr3 (99787194-99786973) | |
| 320-541, gnl|Mm7|chr16 (58611399-58611620) | |
| 644-1992, gnl|bosTau2|chr1 (22424834-22423500) | |
| 644-1992, gnl|Hg17|chr3 (99782305-99780990) | |
| 644-1992, gnl|Mm7|chr16 (58614827-58616540) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-182, gnl|bosTau2|chr1 (22432856-22432741) | |
| 67-182, gnl|canFam2|chr33 (8429805-8429962) | |
| 67-182, gnl|danRer3|chr8 (13871896-13872026) | |
| 67-182, gnl|dasNov1|scaffold_20774 (9225-9381) | |
| 67-182, gnl|echTel1|scaffold_279291 (146389-146536) | |
| 67-182, gnl|fr1|chrUn (153016909-153016791) | |
| 67-182, gnl|galGal2|chr1 (78253314-78253459) | |
| 67-182, gnl|hg17|chr3 (99792145-99792304) | |
| 67-182, gnl|Hg17|chr3 (99792277-99792162) | |
| 67-182, gnl|mm7|chr16 (58609623-58609469) | |
| 67-182, gnl|Mm7|chr16 (58609493-58609608) | |
| 67-182, gnl|monDom2|scaffold_25 (19343446-19343594) | |
| 67-182, gnl|oryCun1|scaffold_177040 (50998-50836) | |
| 67-182, gnl|panTro1|chr2 (100978285-100978444) | |
| 67-182, gnl|rheMac2|chr2 (18798428-18798587) | |
| 67-182, gnl|rn3|chr11 (42813592-42813746) | |
| 67-182, gnl|tetNig1|chr1 (11776205-11776332) | |
| 67-182, gnl|xenTro1|scaffold_72 (40537-40687) | |
| 320-541, gnl|bosTau2|chr1 (22429843-22429622) | |
| 320-541, gnl|Hg17|chr3 (99787194-99786973) | |
| 320-541, gnl|Mm7|chr16 (58611399-58611620) | |
| 644-1992, gnl|bosTau2|chr1 (22424834-22423500) | |
| 644-1992, gnl|Hg17|chr3 (99782305-99780990) | |
| 644-1992, gnl|Mm7|chr16 (58614827-58616540) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| fco (0.78604) | |
| kid (0.648677) | |
| bfe (0.599431) | |
| eli (0.455443) | |
| mga (0.32041) | |
| liv (0.292569) | |
| lin (0.291206) | |
| fce (0.271592) | |
| ste (0.270416) | |
| thg (0.253582) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| col (0.195008) | |
| gul (0.177588) | |
| lun (0.150489) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (0.78604) | |
| kid (0.648677) | |
| bfe (0.599431) | |
| eli (0.455443) | |
| mga (0.32041) | |
| liv (0.292569) | |
| lin (0.291206) | |
| fce (0.271592) | |
| ste (0.270416) | |
| thg (0.253582) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| col (0.195008) | |
| gul (0.177588) | |
| lun (0.150489) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |